Wall clock time and date at job start Tue Mar 31 2020 19:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21276 * 120.00104 * 2 1 4 4 N 1.34782 * 119.99795 * 180.02562 * 2 1 3 5 5 C 1.46921 * 120.62574 * 175.12024 * 4 2 1 6 6 C 1.53192 * 108.77653 * 233.58152 * 5 4 2 7 7 C 1.53042 * 109.31460 * 305.37561 * 6 5 4 8 8 C 1.50706 * 109.46106 * 181.38272 * 7 6 5 9 9 O 1.21283 * 119.99659 * 350.29402 * 8 7 6 10 10 N 1.34772 * 119.99783 * 170.29469 * 8 7 6 11 11 C 1.46919 * 120.63402 * 5.12457 * 10 8 7 12 12 C 1.53189 * 108.77502 * 126.41371 * 11 10 8 13 13 C 1.53041 * 109.31360 * 54.63553 * 12 11 10 14 14 H 1.09008 * 109.44853 * 58.65030 * 13 12 11 15 15 N 1.46505 * 109.46057 * 178.61310 * 13 12 11 16 16 C 1.36934 * 119.99801 * 275.06683 * 15 13 12 17 17 H 1.07995 * 120.00306 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99350 * 179.72240 * 16 15 13 19 19 N 1.31614 * 120.00523 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99695 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47322 * 90.00206 * 20 18 16 22 22 H 1.48497 * 109.47406 * 210.00442 * 20 18 16 23 23 H 1.48500 * 109.47297 * 330.00335 * 20 18 16 24 24 C 1.53035 * 109.53832 * 298.63710 * 13 12 11 25 25 C 1.46934 * 120.62677 * 185.14806 * 10 8 7 26 26 H 1.09000 * 109.70293 * 113.72836 * 25 10 8 27 27 C 1.52995 * 109.58628 * 353.37501 * 25 10 8 28 28 C 1.53034 * 109.53127 * 61.36499 * 7 6 5 29 29 C 1.46924 * 120.63143 * 355.09838 * 4 2 1 30 30 H 1.08997 * 109.46779 * 184.96730 * 1 2 3 31 31 H 1.08997 * 109.46690 * 304.96613 * 1 2 3 32 32 H 1.09005 * 109.46762 * 64.96906 * 1 2 3 33 33 H 1.09006 * 109.58236 * 113.80261 * 5 4 2 34 34 H 1.08991 * 109.59650 * 353.37639 * 5 4 2 35 35 H 1.09002 * 109.50057 * 185.41859 * 6 5 4 36 36 H 1.09002 * 109.49309 * 65.31894 * 6 5 4 37 37 H 1.09004 * 109.45676 * 301.35356 * 7 6 5 38 38 H 1.09000 * 109.59072 * 246.19953 * 11 10 8 39 39 H 1.09004 * 109.58672 * 6.48357 * 11 10 8 40 40 H 1.09001 * 109.50137 * 294.68147 * 12 11 10 41 41 H 1.09009 * 109.49989 * 174.58797 * 12 11 10 42 42 H 0.97001 * 119.99563 * 95.06611 * 15 13 12 43 43 H 0.96994 * 120.00400 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.50002 * 181.31929 * 24 13 12 45 45 H 1.09009 * 109.49490 * 301.41043 * 24 13 12 46 46 H 1.09003 * 109.47264 * 303.15543 * 27 25 10 47 47 H 1.08998 * 109.47412 * 63.15173 * 27 25 10 48 48 H 1.09000 * 109.47178 * 183.15737 * 27 25 10 49 49 H 1.09006 * 109.49772 * 58.58208 * 28 7 6 50 50 H 1.08994 * 109.50157 * 178.67850 * 28 7 6 51 51 H 1.08994 * 109.58936 * 246.20304 * 29 4 2 52 52 H 1.09007 * 109.58604 * 6.48435 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6461 -1.1856 -0.1081 6 6 4.0438 -2.1011 -1.2702 7 6 3.4109 -3.4798 -1.0679 8 6 3.8276 -4.3933 -2.1917 9 8 4.4093 -3.9424 -3.1557 10 7 3.5539 -5.7113 -2.1255 11 6 2.7532 -6.2550 -1.0201 12 6 1.5857 -7.0563 -1.6046 13 6 2.1298 -8.1149 -2.5666 14 1 2.8176 -8.7710 -2.0330 15 7 1.0183 -8.9050 -3.1022 16 6 0.5392 -9.9776 -2.3985 17 1 0.9804 -10.2409 -1.4486 18 6 -0.5176 -10.7226 -2.9034 19 7 -1.0589 -10.3985 -4.0585 20 14 -1.1718 -12.1854 -1.9433 21 1 -2.2515 -11.7345 -1.0288 22 1 -1.7126 -13.1956 -2.8877 23 1 -0.0711 -12.7889 -1.1498 24 6 2.8690 -7.4289 -3.7176 25 6 4.0510 -6.6319 -3.1572 26 1 4.7784 -7.3158 -2.7198 27 6 4.7106 -5.8328 -4.2828 28 6 1.8864 -3.3465 -1.0579 29 6 1.4643 -2.4454 0.1069 30 1 -0.3633 -1.0238 0.0890 31 1 -0.3632 0.5889 0.8422 32 1 -0.3633 0.4348 -0.9312 33 1 4.0758 -1.5647 0.8192 34 1 4.0114 -0.1762 -0.2966 35 1 5.1289 -2.1998 -1.3007 36 1 3.6903 -1.6727 -2.2081 37 1 3.7452 -3.8969 -0.1179 38 1 3.3735 -6.9080 -0.4062 39 1 2.3689 -5.4371 -0.4105 40 1 0.9169 -6.3848 -2.1430 41 1 1.0393 -7.5445 -0.7975 42 1 0.6219 -8.6682 -3.9552 43 1 -1.7976 -10.9189 -4.4111 44 1 3.2360 -8.1824 -4.4147 45 1 2.1881 -6.7539 -4.2362 46 1 3.9958 -5.1156 -4.6865 47 1 5.5773 -5.3004 -3.8909 48 1 5.0286 -6.5128 -5.0731 49 1 1.5535 -2.9062 -1.9978 50 1 1.4358 -4.3315 -0.9373 51 1 1.7160 -2.9272 1.0517 52 1 0.3899 -2.2668 0.0627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044850254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:38 Heat of formation + Delta-G solvation = -41.686470 kcal Electronic energy + Delta-G solvation = -30947.023028 eV Core-core repulsion = 26947.283249 eV Total energy + Delta-G solvation = -3999.739779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.05216 -40.04511 -37.84148 -37.09999 -34.59106 -33.91009 -32.50011 -31.98009 -31.47762 -29.73222 -29.31797 -27.17001 -26.06462 -24.31815 -23.69429 -22.94750 -22.38747 -21.12438 -20.20017 -19.44624 -18.76958 -17.48480 -17.16189 -16.83908 -16.19365 -15.93337 -15.82084 -15.27052 -14.92416 -14.73566 -14.23469 -14.18998 -13.92864 -13.82629 -13.71156 -13.66255 -13.28454 -13.00629 -12.87687 -12.50129 -12.36661 -12.25896 -12.17209 -12.07099 -11.87822 -11.66996 -11.54806 -11.35574 -11.04409 -10.98189 -10.94156 -10.86244 -10.75485 -10.46215 -10.29253 -10.05134 -9.89346 -9.75791 -9.09622 -8.97174 -8.84993 -8.43237 -7.04310 -5.83428 -3.12957 2.33047 2.61477 2.68656 3.01866 3.37517 3.43053 3.45010 4.17511 4.29402 4.31548 4.49737 4.51561 4.67553 4.78633 4.87047 4.92453 4.97927 5.06859 5.09834 5.12336 5.18331 5.25489 5.29714 5.34617 5.39179 5.45017 5.50219 5.54163 5.55514 5.57854 5.68774 5.74903 5.82497 5.89651 5.98284 6.01980 6.10274 6.18289 6.21982 6.30890 6.40538 6.44384 6.49119 6.71085 6.85156 6.98513 7.06587 7.52109 7.62262 7.86610 8.24927 8.34618 9.45960 10.03266 10.37835 11.39007 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.002795 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.501432 B =10014.793692 C =11413.560848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.514 3.486 3 O -0.551 6.551 4 N -0.613 5.613 5 C 0.111 3.889 6 C -0.112 4.112 7 C -0.108 4.108 8 C 0.518 3.482 9 O -0.537 6.537 10 N -0.601 5.601 11 C 0.097 3.903 12 C -0.151 4.151 13 C 0.180 3.820 14 H 0.047 0.953 15 N -0.724 5.724 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.135 4.135 25 C 0.146 3.854 26 H 0.069 0.931 27 C -0.133 4.133 28 C -0.138 4.138 29 C 0.103 3.897 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.041 0.959 49 H 0.076 0.924 50 H 0.096 0.904 51 H 0.075 0.925 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.415 16.164 9.494 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.303 3.697 3 O -0.429 6.429 4 N -0.348 5.348 5 C -0.011 4.011 6 C -0.150 4.150 7 C -0.129 4.129 8 C 0.306 3.694 9 O -0.415 6.415 10 N -0.334 5.334 11 C -0.026 4.026 12 C -0.192 4.192 13 C 0.069 3.931 14 H 0.065 0.935 15 N -0.364 5.364 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.174 4.174 25 C 0.043 3.957 26 H 0.087 0.913 27 C -0.190 4.190 28 C -0.176 4.176 29 C -0.020 4.020 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.060 0.940 49 H 0.095 0.905 50 H 0.114 0.886 51 H 0.093 0.907 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.999 16.780 9.080 20.689 hybrid contribution -0.751 -1.089 0.294 1.355 sum 7.248 15.691 9.374 19.663 Atomic orbital electron populations 1.22060 0.91831 1.04775 1.05409 1.20824 0.90680 0.83000 0.75166 1.90707 1.70707 1.31120 1.50346 1.48223 1.07431 1.06213 1.72888 1.21639 0.79537 1.01748 0.98220 1.21723 1.01249 0.92978 0.99068 1.21352 0.96944 0.95977 0.98634 1.20471 0.78999 0.82244 0.87705 1.90746 1.42312 1.75595 1.32867 1.48206 1.52470 1.06684 1.26042 1.22094 0.93469 0.98435 0.88587 1.22681 0.96479 0.98867 1.01173 1.20148 0.90056 0.90802 0.92080 0.93525 1.42432 1.37337 1.32467 1.24155 1.19215 1.11920 1.04207 1.01847 0.91192 1.24750 0.99087 0.99738 0.97278 1.69655 1.27174 1.41840 1.19294 0.86217 0.78809 0.82459 0.78843 1.21725 1.21780 1.20761 1.22293 0.96722 0.99105 0.99241 1.21312 0.95437 0.90623 0.88318 0.91267 1.22188 1.01717 0.98581 0.96515 1.22188 0.94042 1.01512 0.99889 1.21953 0.97841 0.83548 0.98652 0.89666 0.88777 0.88593 0.91417 0.88743 0.90063 0.90518 0.88726 0.91608 0.89641 0.92159 0.90602 0.78262 0.93456 0.90724 0.91841 0.91313 0.91370 0.94015 0.90523 0.88594 0.90687 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 10.12 36.01 0.36 -0.78 16 2 C 0.51 5.21 7.80 -10.98 -0.09 5.13 16 3 O -0.55 -7.89 16.53 5.56 0.09 -7.80 16 4 N -0.61 -5.25 2.97 -172.77 -0.51 -5.76 16 5 C 0.11 0.96 6.42 -3.71 -0.02 0.94 16 6 C -0.11 -1.04 4.68 -26.61 -0.12 -1.16 16 7 C -0.11 -0.97 1.65 -91.73 -0.15 -1.12 16 8 C 0.52 6.42 6.91 -10.98 -0.08 6.35 16 9 O -0.54 -8.17 11.41 5.56 0.06 -8.11 16 10 N -0.60 -7.45 2.97 -165.23 -0.49 -7.94 16 11 C 0.10 1.07 5.59 -3.72 -0.02 1.05 16 12 C -0.15 -2.24 5.60 -26.61 -0.15 -2.39 16 13 C 0.18 3.22 2.73 -67.89 -0.19 3.04 16 14 H 0.05 0.86 8.08 -51.92 -0.42 0.44 16 15 N -0.72 -17.03 5.12 -53.38 -0.27 -17.30 16 16 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 20 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.13 -2.14 4.84 -26.62 -0.13 -2.27 16 25 C 0.15 2.00 3.49 -67.60 -0.24 1.76 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 C -0.13 -1.85 7.59 37.16 0.28 -1.57 16 28 C -0.14 -1.09 4.92 -26.61 -0.13 -1.22 16 29 C 0.10 0.64 6.36 -3.71 -0.02 0.61 16 30 H 0.08 0.36 5.10 -51.93 -0.26 0.10 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.96 7.04 -51.93 -0.37 0.59 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 37 H 0.09 0.70 7.67 -51.93 -0.40 0.30 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.72 4.03 -51.93 -0.21 0.51 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 42 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 46 H 0.07 1.07 6.82 -51.93 -0.35 0.72 16 47 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.10 0.75 5.30 -51.93 -0.28 0.48 16 51 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 52 H 0.10 0.45 5.04 -51.93 -0.26 0.19 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -32.96 390.64 -9.14 -42.10 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.67 Total: 7.52 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.93 Total: 1.46 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.55 Total: -57.57 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.16 Total: -15.91 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.96 -9.14 -42.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.415 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds