Wall clock time and date at job start Tue Mar 31 2020 19:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 120.00175 * 2 1 4 4 N 1.34781 * 120.00010 * 179.73064 * 2 1 3 5 5 C 1.46925 * 120.63187 * 174.80021 * 4 2 1 6 6 C 1.53625 * 108.54454 * 126.36454 * 5 4 2 7 7 C 1.53044 * 109.24046 * 54.85410 * 6 5 4 8 8 C 1.50692 * 109.44777 * 178.49570 * 7 6 5 9 9 O 1.21279 * 119.99936 * 111.96441 * 8 7 6 10 10 N 1.34782 * 120.00314 * 291.97246 * 8 7 6 11 11 C 1.46928 * 120.62731 * 356.43424 * 10 8 7 12 12 C 1.52758 * 109.00874 * 233.58901 * 11 10 8 13 13 C 1.53041 * 109.38519 * 305.59240 * 12 11 10 14 14 H 1.08995 * 109.46153 * 181.26105 * 13 12 11 15 15 N 1.46501 * 109.45763 * 301.21730 * 13 12 11 16 16 C 1.36937 * 120.00125 * 275.07011 * 15 13 12 17 17 H 1.07997 * 120.00235 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99912 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00137 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99966 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47159 * 90.00146 * 20 18 16 22 22 H 1.48494 * 109.47181 * 210.00007 * 20 18 16 23 23 H 1.48499 * 109.47229 * 330.00341 * 20 18 16 24 24 C 1.53036 * 109.53826 * 61.23788 * 13 12 11 25 25 C 1.46925 * 120.63297 * 176.72576 * 10 8 7 26 26 H 1.08998 * 109.58319 * 246.15009 * 25 10 8 27 27 C 1.53004 * 109.58533 * 6.57072 * 25 10 8 28 28 C 1.53039 * 109.53931 * 298.51105 * 7 6 5 29 29 C 1.46922 * 120.62819 * 355.07307 * 4 2 1 30 30 H 1.09002 * 109.46982 * 273.62552 * 1 2 3 31 31 H 1.08996 * 109.47069 * 33.61691 * 1 2 3 32 32 H 1.09001 * 109.47502 * 153.62393 * 1 2 3 33 33 H 1.08998 * 109.58276 * 246.19982 * 5 4 2 34 34 H 1.08998 * 109.58549 * 6.62175 * 5 4 2 35 35 H 1.09000 * 109.63429 * 294.86280 * 6 5 4 36 36 H 1.09002 * 109.42649 * 174.72572 * 6 5 4 37 37 H 1.09002 * 109.45441 * 58.53332 * 7 6 5 38 38 H 1.09006 * 109.58582 * 353.42525 * 11 10 8 39 39 H 1.09000 * 109.58416 * 113.85249 * 11 10 8 40 40 H 1.08996 * 109.56808 * 185.55295 * 12 11 10 41 41 H 1.09001 * 109.38913 * 65.52122 * 12 11 10 42 42 H 0.97003 * 119.99678 * 95.06869 * 15 13 12 43 43 H 0.96995 * 120.00618 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.49720 * 178.68541 * 24 13 12 45 45 H 1.08998 * 109.49642 * 58.59318 * 24 13 12 46 46 H 1.08999 * 109.47059 * 56.46114 * 27 25 10 47 47 H 1.09004 * 109.46562 * 176.45783 * 27 25 10 48 48 H 1.08999 * 109.47245 * 296.45677 * 27 25 10 49 49 H 1.08997 * 109.49496 * 301.41555 * 28 7 6 50 50 H 1.08997 * 109.49818 * 181.31361 * 28 7 6 51 51 H 1.09006 * 109.58712 * 353.37689 * 29 4 2 52 52 H 1.08998 * 109.58393 * 113.80167 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0055 5 6 3.6455 -1.1866 -0.1090 6 6 4.2167 -1.9968 1.0646 7 6 3.5696 -3.3836 1.0823 8 6 4.1535 -4.1954 2.2096 9 8 3.4648 -4.4934 3.1623 10 7 5.4413 -4.5901 2.1593 11 6 6.2662 -4.3039 0.9776 12 6 6.8845 -5.6072 0.4750 13 6 7.6398 -6.2859 1.6200 14 1 8.1003 -7.2047 1.2570 15 7 8.6800 -5.3838 2.1207 16 6 9.9045 -5.3443 1.5091 17 1 10.1037 -5.9784 0.6578 18 6 10.8903 -4.4900 1.9839 19 7 12.0674 -4.4523 1.3964 20 14 10.5460 -3.3938 3.4567 21 1 10.9148 -4.1103 4.7040 22 1 11.3479 -2.1489 3.3455 23 1 9.1016 -3.0507 3.4916 24 6 6.6641 -6.6170 2.7515 25 6 6.0450 -5.3202 3.2823 26 1 6.8197 -4.7070 3.7425 27 6 4.9675 -5.6521 4.3167 28 6 2.0594 -3.2412 1.2856 29 6 1.4643 -2.4447 0.1201 30 1 -0.3633 0.0650 1.0256 31 1 -0.3633 0.8558 -0.5689 32 1 -0.3634 -0.9207 -0.4565 33 1 3.9322 -1.6522 -1.0519 34 1 4.0285 -0.1667 -0.0715 35 1 4.0031 -1.4836 2.0023 36 1 5.2950 -2.0999 0.9432 37 1 3.7627 -3.8864 0.1347 38 1 5.6445 -3.8700 0.1943 39 1 7.0594 -3.6062 1.2460 40 1 7.5756 -5.3929 -0.3402 41 1 6.0948 -6.2683 0.1179 42 1 8.5012 -4.8146 2.8855 43 1 12.7561 -3.8551 1.7279 44 1 7.1984 -7.1212 3.5567 45 1 5.8761 -7.2683 2.3734 46 1 4.1671 -6.2171 3.8391 47 1 5.4046 -6.2477 5.1182 48 1 4.5635 -4.7278 4.7298 49 1 1.8662 -2.7163 2.2211 50 1 1.6023 -4.2300 1.3214 51 1 0.4076 -2.2553 0.3088 52 1 1.5767 -3.0109 -0.8045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044850255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:42 Heat of formation + Delta-G solvation = -43.235484 kcal Electronic energy + Delta-G solvation = -31456.963381 eV Core-core repulsion = 27457.156431 eV Total energy + Delta-G solvation = -3999.806949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.00130 -40.05176 -38.01040 -37.08332 -34.43458 -33.89765 -32.14405 -32.02700 -31.69875 -29.84911 -29.56764 -27.33995 -26.02650 -24.28817 -23.65988 -23.17065 -22.35595 -21.37655 -19.98965 -19.18991 -18.46844 -17.80264 -17.38049 -16.66084 -16.20156 -15.94315 -15.79565 -15.33000 -14.79649 -14.51569 -14.29792 -14.23657 -13.98808 -13.79277 -13.66926 -13.48350 -13.33726 -13.23677 -12.84631 -12.55558 -12.46221 -12.33645 -12.28794 -12.12678 -11.88981 -11.71508 -11.55133 -11.37592 -11.10164 -11.05336 -10.97202 -10.89024 -10.76302 -10.51631 -10.29506 -10.06636 -10.05150 -9.63404 -9.06994 -9.02102 -8.80786 -8.31681 -7.34642 -5.83596 -3.19552 2.33170 2.65458 2.71300 3.08177 3.30620 3.34352 3.41085 4.20214 4.30121 4.39854 4.52313 4.59146 4.70939 4.81713 4.83008 4.92904 4.98746 5.05127 5.09175 5.14176 5.16328 5.26080 5.28014 5.38252 5.44565 5.47072 5.49763 5.50726 5.52628 5.59901 5.68401 5.71845 5.82137 5.85409 5.94466 6.00365 6.00724 6.12924 6.19739 6.27014 6.34381 6.43438 6.55842 6.60134 6.66159 6.90896 7.08105 7.59978 7.87444 7.92363 8.29361 8.35478 9.13375 9.86054 10.05523 11.34702 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013993 B = 0.003297 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.507397 B = 8489.508800 C = 9472.759169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.614 5.614 5 C 0.112 3.888 6 C -0.130 4.130 7 C -0.108 4.108 8 C 0.518 3.482 9 O -0.543 6.543 10 N -0.598 5.598 11 C 0.110 3.890 12 C -0.150 4.150 13 C 0.179 3.821 14 H 0.060 0.940 15 N -0.746 5.746 16 C -0.244 4.244 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.880 3.120 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.279 1.279 24 C -0.137 4.137 25 C 0.143 3.857 26 H 0.070 0.930 27 C -0.132 4.132 28 C -0.112 4.112 29 C 0.105 3.895 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.360 0.640 43 H 0.260 0.740 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.040 0.960 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.356 1.374 -3.258 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.301 3.699 3 O -0.426 6.426 4 N -0.349 5.349 5 C -0.010 4.010 6 C -0.168 4.168 7 C -0.130 4.130 8 C 0.306 3.694 9 O -0.421 6.421 10 N -0.330 5.330 11 C -0.012 4.012 12 C -0.191 4.191 13 C 0.070 3.930 14 H 0.078 0.922 15 N -0.390 5.390 16 C -0.373 4.373 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.580 5.580 20 Si 0.710 3.290 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.176 4.176 25 C 0.040 3.960 26 H 0.088 0.912 27 C -0.189 4.189 28 C -0.151 4.151 29 C -0.018 4.018 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.101 0.899 51 H 0.109 0.891 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.162 1.738 -2.900 24.398 hybrid contribution 0.153 0.716 0.945 1.195 sum -24.009 2.454 -1.955 24.214 Atomic orbital electron populations 1.21968 0.91889 1.04739 1.04933 1.20827 0.90648 0.83043 0.75334 1.90724 1.70706 1.31104 1.50066 1.48220 1.07476 1.06259 1.72929 1.21705 0.79119 1.02395 0.97786 1.22080 1.01099 0.93832 0.99785 1.21350 0.96444 0.96396 0.98779 1.20457 0.81513 0.79704 0.87766 1.90723 1.60251 1.56907 1.34256 1.48198 1.10641 1.55633 1.18572 1.21756 0.94305 0.98927 0.86255 1.22418 0.99441 0.96367 1.00826 1.20154 0.88095 0.93469 0.91310 0.92210 1.42875 1.11780 1.47638 1.36715 1.19057 0.87432 1.19592 1.11258 0.89142 1.24650 0.95799 0.99647 0.98788 1.69685 1.04118 1.41531 1.42659 0.86644 0.77245 0.81034 0.84053 1.21053 1.21692 1.20525 1.22287 0.98857 0.96482 0.99925 1.21262 0.95345 0.92942 0.86441 0.91207 1.22196 0.97203 1.02435 0.97090 1.21720 0.93446 1.01186 0.98746 1.21879 0.96827 0.84105 0.98972 0.88792 0.88900 0.89921 0.90965 0.88506 0.90872 0.89391 0.88556 0.90595 0.90218 0.90223 0.92964 0.80625 0.93007 0.90659 0.91604 0.91439 0.94150 0.91200 0.90510 0.89899 0.89055 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 9.44 36.00 0.34 -0.70 16 2 C 0.51 5.29 7.80 -10.98 -0.09 5.21 16 3 O -0.55 -8.15 16.52 5.55 0.09 -8.06 16 4 N -0.61 -5.48 2.97 -172.50 -0.51 -5.99 16 5 C 0.11 1.07 6.47 -3.49 -0.02 1.05 16 6 C -0.13 -1.32 5.02 -26.38 -0.13 -1.45 16 7 C -0.11 -1.06 1.63 -91.73 -0.15 -1.21 16 8 C 0.52 6.87 6.90 -10.99 -0.08 6.80 16 9 O -0.54 -8.38 11.41 5.56 0.06 -8.31 16 10 N -0.60 -8.39 2.98 -165.48 -0.49 -8.88 16 11 C 0.11 1.51 4.73 -3.93 -0.02 1.49 16 12 C -0.15 -2.22 5.76 -26.83 -0.15 -2.37 16 13 C 0.18 3.10 3.10 -67.89 -0.21 2.89 16 14 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 15 N -0.75 -16.10 4.12 -53.39 -0.22 -16.32 16 16 C -0.24 -6.41 10.41 -15.06 -0.16 -6.57 16 17 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 19 N -0.93 -28.37 13.97 55.49 0.78 -27.60 16 20 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 24 C -0.14 -2.04 5.07 -26.62 -0.13 -2.17 16 25 C 0.14 2.17 3.20 -67.60 -0.22 1.96 16 26 H 0.07 1.20 6.64 -51.93 -0.34 0.85 16 27 C -0.13 -1.91 7.60 37.16 0.28 -1.63 16 28 C -0.11 -0.94 4.67 -26.61 -0.12 -1.06 16 29 C 0.10 0.65 6.15 -3.71 -0.02 0.63 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.30 6.25 -51.93 -0.32 -0.03 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 1.10 7.00 -51.93 -0.36 0.73 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.93 6.04 -51.93 -0.31 0.62 16 37 H 0.10 0.82 7.09 -51.93 -0.37 0.45 16 38 H 0.08 0.83 4.99 -51.93 -0.26 0.57 16 39 H 0.08 1.30 7.74 -51.93 -0.40 0.90 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.36 7.83 3.92 -40.82 -0.16 7.67 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 1.01 6.85 -51.93 -0.36 0.65 16 47 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 1.10 6.65 -51.93 -0.35 0.75 16 49 H 0.08 0.77 8.05 -51.93 -0.42 0.36 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.09 0.38 5.63 -51.93 -0.29 0.09 16 52 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -33.29 384.71 -8.80 -42.09 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.61 Total: 7.53 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.98 Total: 2.97 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.45 Total: -58.80 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.16 Total: -16.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.29 -8.80 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.145 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds