Wall clock time and date at job start Tue Mar 31 2020 19:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 120.00143 * 2 1 4 4 N 1.34783 * 120.00151 * 179.97438 * 2 1 3 5 5 C 1.46931 * 120.62788 * 354.37212 * 4 2 1 6 6 C 1.53190 * 108.77153 * 233.58360 * 5 4 2 7 7 C 1.53043 * 109.31335 * 305.36286 * 6 5 4 8 8 C 1.50700 * 109.46102 * 181.38689 * 7 6 5 9 9 O 1.21282 * 119.99626 * 352.60678 * 8 7 6 10 10 N 1.34769 * 120.00097 * 172.60291 * 8 7 6 11 11 C 1.46924 * 120.63156 * 6.04432 * 10 8 7 12 12 C 1.53201 * 108.76282 * 233.63508 * 11 10 8 13 13 C 1.53037 * 109.31156 * 305.34374 * 12 11 10 14 14 H 1.09000 * 109.45861 * 301.37084 * 13 12 11 15 15 N 1.46504 * 109.45726 * 181.40168 * 13 12 11 16 16 C 1.36934 * 120.00186 * 84.97002 * 15 13 12 17 17 H 1.08001 * 120.00122 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99922 * 179.97438 * 16 15 13 19 19 N 1.31625 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47060 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47194 * 240.00329 * 20 18 16 23 23 H 1.48498 * 109.47424 * 119.99906 * 20 18 16 24 24 C 1.53037 * 109.52798 * 61.38591 * 13 12 11 25 25 C 1.46932 * 120.62888 * 186.06144 * 10 8 7 26 26 H 1.09002 * 109.69999 * 246.22795 * 25 10 8 27 27 C 1.52997 * 109.58936 * 6.58504 * 25 10 8 28 28 C 1.53037 * 109.53562 * 61.37004 * 7 6 5 29 29 C 1.46928 * 120.63097 * 174.34395 * 4 2 1 30 30 H 1.09000 * 109.46624 * 184.54248 * 1 2 3 31 31 H 1.08998 * 109.47088 * 304.53853 * 1 2 3 32 32 H 1.08994 * 109.47054 * 64.54514 * 1 2 3 33 33 H 1.09000 * 109.58403 * 113.79973 * 5 4 2 34 34 H 1.08992 * 109.70215 * 353.44363 * 5 4 2 35 35 H 1.09000 * 109.49529 * 185.41466 * 6 5 4 36 36 H 1.08996 * 109.52590 * 65.33765 * 6 5 4 37 37 H 1.09001 * 109.46326 * 301.36150 * 7 6 5 38 38 H 1.08998 * 109.58317 * 353.41106 * 11 10 8 39 39 H 1.08999 * 109.58807 * 113.84390 * 11 10 8 40 40 H 1.08995 * 109.48413 * 185.39703 * 12 11 10 41 41 H 1.09001 * 109.50540 * 65.30222 * 12 11 10 42 42 H 0.96997 * 119.99460 * 264.97064 * 15 13 12 43 43 H 0.96992 * 119.99872 * 359.97438 * 19 18 16 44 44 H 1.08998 * 109.49693 * 58.57708 * 24 13 12 45 45 H 1.09004 * 109.49613 * 178.67958 * 24 13 12 46 46 H 1.08995 * 109.47266 * 173.80018 * 27 25 10 47 47 H 1.09000 * 109.46895 * 293.80355 * 27 25 10 48 48 H 1.08996 * 109.47016 * 53.79993 * 27 25 10 49 49 H 1.08999 * 109.50039 * 58.58310 * 28 7 6 50 50 H 1.08996 * 109.49820 * 178.68337 * 28 7 6 51 51 H 1.08994 * 109.58879 * 246.20300 * 29 4 2 52 52 H 1.09004 * 109.58220 * 6.63127 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4656 -2.4446 0.1251 6 6 2.0733 -3.2388 1.2856 7 6 3.5812 -3.3816 1.0664 8 6 4.1772 -4.1916 2.1888 9 8 3.4950 -4.4989 3.1434 10 7 5.4680 -4.5745 2.1318 11 6 6.3423 -4.1009 1.0501 12 6 6.9874 -5.3135 0.3713 13 6 7.6977 -6.1653 1.4258 14 1 8.4508 -5.5621 1.9327 15 7 8.3441 -7.3079 0.7755 16 6 9.5941 -7.1703 0.2336 17 1 10.1036 -6.2194 0.2858 18 6 10.2067 -8.2531 -0.3820 19 7 9.5860 -9.4120 -0.4453 20 14 11.9122 -8.0655 -1.1208 21 1 12.3883 -6.6733 -0.9197 22 1 11.8576 -8.3643 -2.5743 23 1 12.8462 -9.0094 -0.4560 24 6 6.6767 -6.6707 2.4477 25 6 6.0278 -5.4738 3.1500 26 1 6.7781 -4.9433 3.7363 27 6 4.9094 -5.9645 4.0716 28 6 4.2280 -1.9949 1.0392 29 6 3.6448 -1.1865 -0.1241 30 1 -0.3632 -1.0245 0.0814 31 1 -0.3633 0.5826 0.8465 32 1 -0.3633 0.4417 -0.9279 33 1 1.5682 -3.0125 -0.7996 34 1 0.4105 -2.2570 0.3235 35 1 1.6166 -4.2276 1.3282 36 1 1.8899 -2.7127 2.2224 37 1 3.7641 -3.8861 0.1176 38 1 5.7530 -3.5448 0.3211 39 1 7.1188 -3.4572 1.4632 40 1 7.7111 -4.9732 -0.3693 41 1 6.2171 -5.9088 -0.1188 42 1 7.8866 -8.1620 0.7290 43 1 8.7006 -9.5095 -0.0614 44 1 5.9093 -7.2531 1.9378 45 1 7.1793 -7.2965 3.1851 46 1 5.3054 -6.7148 4.7559 47 1 4.5144 -5.1243 4.6427 48 1 4.1117 -6.4039 3.4728 49 1 4.0244 -1.4800 1.9781 50 1 5.3049 -2.0983 0.9065 51 1 3.9250 -1.6518 -1.0690 52 1 4.0279 -0.1666 -0.0887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044850256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:47 Heat of formation + Delta-G solvation = -43.567456 kcal Electronic energy + Delta-G solvation = -30830.578953 eV Core-core repulsion = 26830.757608 eV Total energy + Delta-G solvation = -3999.821345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.09042 -40.09421 -37.92585 -37.12559 -34.82612 -34.06286 -32.18863 -32.14291 -31.81566 -29.75706 -29.09666 -27.14337 -26.11262 -24.14217 -23.81877 -23.04413 -22.35547 -21.25007 -20.25529 -19.38680 -18.98104 -17.54714 -17.33054 -16.83059 -16.29036 -16.05589 -15.86092 -15.42889 -14.88394 -14.54678 -14.50626 -14.23938 -14.00704 -13.75421 -13.63307 -13.59306 -13.52084 -13.26684 -13.02115 -12.72223 -12.51042 -12.41367 -12.11392 -12.04947 -11.90298 -11.78489 -11.54784 -11.39772 -11.10423 -10.98956 -10.87328 -10.85058 -10.58546 -10.45765 -10.15366 -10.08285 -10.07782 -9.27366 -9.13749 -8.96418 -8.90157 -8.49366 -7.10017 -6.15425 -3.16088 2.27842 2.57191 2.63497 2.96917 3.47905 3.54257 3.63374 4.13305 4.21647 4.27745 4.49960 4.60717 4.63739 4.69108 4.80561 4.88089 4.93996 5.00281 5.04378 5.06895 5.11944 5.21253 5.21759 5.32785 5.37255 5.39375 5.44009 5.47772 5.49551 5.57593 5.64083 5.70710 5.75841 5.81608 5.90851 5.93226 6.01890 6.09320 6.12793 6.24129 6.32038 6.35420 6.41515 6.63255 6.78307 6.91546 7.02009 7.47140 7.75763 7.81545 8.19550 8.70294 9.16716 10.03189 10.18162 11.32928 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.002567 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.433309 B =10906.052856 C =11970.463827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.613 5.613 5 C 0.101 3.899 6 C -0.113 4.113 7 C -0.110 4.110 8 C 0.520 3.480 9 O -0.539 6.539 10 N -0.601 5.601 11 C 0.100 3.900 12 C -0.150 4.150 13 C 0.184 3.816 14 H 0.048 0.952 15 N -0.736 5.736 16 C -0.331 4.331 17 H 0.065 0.935 18 C -0.045 4.045 19 N -0.944 5.944 20 Si 1.084 2.916 21 H -0.295 1.295 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.135 4.135 25 C 0.147 3.853 26 H 0.070 0.930 27 C -0.135 4.135 28 C -0.134 4.134 29 C 0.112 3.888 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.366 0.634 43 H 0.256 0.744 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.072 0.928 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.288 15.401 2.417 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.303 3.697 3 O -0.428 6.428 4 N -0.348 5.348 5 C -0.021 4.021 6 C -0.151 4.151 7 C -0.131 4.131 8 C 0.308 3.692 9 O -0.417 6.417 10 N -0.334 5.334 11 C -0.023 4.023 12 C -0.192 4.192 13 C 0.074 3.926 14 H 0.066 0.934 15 N -0.377 5.377 16 C -0.462 4.462 17 H 0.083 0.917 18 C -0.243 4.243 19 N -0.589 5.589 20 Si 0.915 3.085 21 H -0.221 1.221 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.174 4.174 25 C 0.044 3.956 26 H 0.088 0.912 27 C -0.192 4.192 28 C -0.172 4.172 29 C -0.011 4.011 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.199 0.801 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.109 0.891 51 H 0.090 0.910 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.944 15.192 2.120 22.855 hybrid contribution -1.186 0.350 0.614 1.381 sum -18.130 15.541 2.734 24.035 Atomic orbital electron populations 1.22043 0.91883 1.04680 1.05340 1.20819 0.90670 0.83022 0.75232 1.90716 1.70666 1.31112 1.50262 1.48218 1.07483 1.06321 1.72752 1.21970 0.97030 0.84038 0.99097 1.21723 0.93331 1.01340 0.98749 1.21359 0.96543 0.96342 0.98853 1.20455 0.81475 0.79767 0.87523 1.90722 1.61097 1.56309 1.33606 1.48213 1.09907 1.47604 1.27697 1.22088 0.93591 0.97525 0.89097 1.22662 1.00110 0.96061 1.00329 1.20093 0.92031 0.89716 0.90755 0.93373 1.42450 1.18006 1.08439 1.68821 1.20081 0.93638 0.98629 1.33890 0.91679 1.25769 1.05653 0.92622 1.00233 1.70818 1.15347 1.24432 1.48345 0.83163 0.74610 0.74404 0.76279 1.22106 1.22020 1.22000 1.22309 0.98889 0.96963 0.99279 1.21280 0.95803 0.90069 0.88462 0.91217 1.22171 0.96943 1.01266 0.98801 1.22155 1.01078 0.93988 1.00012 1.21613 0.79310 1.02307 0.97850 0.89791 0.88780 0.88655 0.90878 0.88650 0.89797 0.90473 0.88446 0.89660 0.91338 0.90583 0.92360 0.80053 0.93302 0.91991 0.90760 0.93828 0.90680 0.91937 0.90812 0.89119 0.90986 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 10.11 36.01 0.36 -0.62 16 2 C 0.51 4.93 7.80 -10.98 -0.09 4.84 16 3 O -0.55 -7.65 16.52 5.56 0.09 -7.56 16 4 N -0.61 -5.03 2.97 -172.76 -0.51 -5.54 16 5 C 0.10 0.60 6.30 -3.71 -0.02 0.58 16 6 C -0.11 -0.90 4.66 -26.61 -0.12 -1.03 16 7 C -0.11 -1.00 1.65 -91.73 -0.15 -1.16 16 8 C 0.52 6.50 6.83 -10.99 -0.08 6.43 16 9 O -0.54 -8.02 11.58 5.56 0.06 -7.96 16 10 N -0.60 -7.71 2.97 -165.22 -0.49 -8.20 16 11 C 0.10 1.19 5.14 -3.71 -0.02 1.17 16 12 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 13 C 0.18 3.43 2.73 -67.89 -0.19 3.24 16 14 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 15 N -0.74 -17.63 5.12 -53.39 -0.27 -17.91 16 16 C -0.33 -8.97 9.93 -15.06 -0.15 -9.12 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 18 C -0.05 -1.28 5.50 -17.43 -0.10 -1.38 16 19 N -0.94 -28.71 13.70 55.49 0.76 -27.95 16 20 Si 1.08 25.49 29.92 -169.99 -5.09 20.40 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.14 -2.18 4.84 -26.61 -0.13 -2.31 16 25 C 0.15 2.05 3.49 -67.60 -0.24 1.81 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 C -0.13 -1.86 7.61 37.16 0.28 -1.58 16 28 C -0.13 -1.14 4.90 -26.61 -0.13 -1.27 16 29 C 0.11 0.93 6.44 -3.71 -0.02 0.91 16 30 H 0.08 0.27 5.15 -51.93 -0.27 0.01 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.37 5.15 -51.93 -0.27 0.10 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 37 H 0.10 0.83 7.59 -51.93 -0.39 0.43 16 38 H 0.09 0.81 4.41 -51.93 -0.23 0.58 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.37 9.21 6.63 -40.82 -0.27 8.94 16 43 H 0.26 7.66 6.77 -40.82 -0.28 7.38 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 1.09 6.56 -51.93 -0.34 0.75 16 48 H 0.06 0.94 6.94 -51.93 -0.36 0.58 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.72 5.24 -51.93 -0.27 0.45 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 52 H 0.10 0.94 7.00 -51.93 -0.36 0.58 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -34.25 388.95 -9.10 -43.35 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -8.58 Total: 7.50 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.93 Total: -2.00 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.52 Total: -59.60 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.16 Total: -15.51 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.25 -9.10 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.214 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds