Wall clock time and date at job start Tue Mar 31 2020 19:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58776 * 2 1 4 4 C 1.53164 * 109.70723 * 239.63612 * 2 1 3 5 5 C 1.53043 * 109.32643 * 185.50236 * 4 2 1 6 6 H 1.09004 * 109.45483 * 181.38403 * 5 4 2 7 7 N 1.46495 * 109.45907 * 301.35999 * 5 4 2 8 8 C 1.36944 * 119.99570 * 205.02896 * 7 5 4 9 9 H 1.08001 * 120.00216 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99504 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99554 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00417 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47085 * 89.99836 * 12 10 8 14 14 H 1.48498 * 109.46771 * 329.99753 * 12 10 8 15 15 H 1.48500 * 109.47101 * 210.00298 * 12 10 8 16 16 C 1.53040 * 109.52618 * 61.37330 * 5 4 2 17 17 C 1.53187 * 109.31443 * 298.64183 * 16 5 4 18 18 N 1.46922 * 108.77798 * 54.63517 * 17 16 5 19 19 C 1.34777 * 120.63542 * 126.41634 * 18 17 16 20 20 O 1.21279 * 120.00147 * 174.22590 * 19 18 17 21 21 C 1.50700 * 119.99646 * 354.22677 * 19 18 17 22 22 N 1.46501 * 109.47189 * 180.02562 * 21 19 18 23 23 C 1.47193 * 119.78317 * 89.99778 * 22 21 19 24 24 C 1.52992 * 108.66651 * 251.95249 * 23 22 21 25 25 C 1.51779 * 110.87807 * 273.53850 * 24 23 22 26 26 C 1.51790 * 113.80379 * 66.99853 * 25 24 23 27 27 C 1.53061 * 110.75096 * 293.17647 * 26 25 24 28 28 C 1.33368 * 119.78350 * 269.72551 * 22 21 19 29 29 O 1.21278 * 119.89215 * 359.71769 * 28 22 21 30 30 H 1.08994 * 109.47020 * 305.47049 * 1 2 3 31 31 H 1.09004 * 109.46845 * 65.46703 * 1 2 3 32 32 H 1.09003 * 109.47345 * 185.46789 * 1 2 3 33 33 H 1.08997 * 109.47633 * 65.55288 * 4 2 1 34 34 H 1.08997 * 109.49970 * 305.46495 * 4 2 1 35 35 H 0.96995 * 119.99949 * 25.02927 * 7 5 4 36 36 H 0.97004 * 120.00164 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.49691 * 58.59199 * 16 5 4 38 38 H 1.09002 * 109.49853 * 178.65314 * 16 5 4 39 39 H 1.09000 * 109.59299 * 174.42247 * 17 16 5 40 40 H 1.09008 * 109.58498 * 294.70675 * 17 16 5 41 41 H 1.09003 * 109.46905 * 299.99772 * 21 19 18 42 42 H 1.08994 * 109.47149 * 59.99851 * 21 19 18 43 43 H 1.08999 * 109.60381 * 11.71000 * 23 22 21 44 44 H 1.08998 * 109.60807 * 132.03407 * 23 22 21 45 45 H 1.08996 * 109.19362 * 33.90592 * 24 23 22 46 46 H 1.09001 * 109.19531 * 153.22804 * 24 23 22 47 47 H 1.08995 * 108.61205 * 188.11312 * 25 24 23 48 48 H 1.08994 * 108.61693 * 305.87649 * 25 24 23 49 49 H 1.08994 * 109.22848 * 53.51352 * 26 25 24 50 50 H 1.09007 * 109.21928 * 172.85286 * 26 25 24 51 51 H 1.08997 * 109.63762 * 204.62781 * 27 26 25 52 52 H 1.08998 * 109.63114 * 325.23368 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2441 5 6 3.5706 -0.8444 -1.1673 6 1 3.9427 -1.3410 -2.0634 7 7 4.1573 0.4946 -1.0719 8 6 5.4415 0.7111 -1.4953 9 1 6.0219 -0.1053 -1.8992 10 6 5.9976 1.9797 -1.4045 11 7 7.2321 2.1877 -1.8110 12 14 4.9940 3.3916 -0.7054 13 1 5.2011 3.4665 0.7632 14 1 3.5546 3.1650 -0.9915 15 1 5.4286 4.6658 -1.3322 16 6 3.9602 -1.6608 0.0671 17 6 3.4653 -0.9426 1.3265 18 7 2.0225 -0.6981 1.1954 19 6 1.1670 -1.1060 2.1537 20 8 -0.0065 -0.8075 2.0860 21 6 1.6688 -1.9330 3.3092 22 7 0.5535 -2.2467 4.2059 23 6 -0.2359 -3.4702 3.9907 24 6 -1.6121 -3.0765 3.4507 25 6 -2.5703 -2.7666 4.5863 26 6 -2.2032 -1.5231 5.3755 27 6 -0.8945 -1.7332 6.1408 28 6 0.2634 -1.4244 5.2151 29 8 0.9266 -0.4241 5.3894 30 1 -0.3633 0.5963 0.8369 31 1 -0.3633 0.4267 -0.9349 32 1 -0.3634 -1.0230 0.0979 33 1 1.7687 -0.1672 -2.1359 34 1 1.6080 -1.7257 -1.2901 35 1 3.6362 1.2277 -0.7089 36 1 7.6206 3.0743 -1.7479 37 1 3.5036 -2.6489 0.0087 38 1 5.0446 -1.7631 0.1083 39 1 3.6523 -1.5666 2.2004 40 1 3.9904 0.0064 1.4360 41 1 2.1026 -2.8591 2.9319 42 1 2.4275 -1.3723 3.8549 43 1 0.2710 -4.1101 3.2684 44 1 -0.3495 -4.0030 4.9347 45 1 -1.5099 -2.1953 2.8173 46 1 -2.0134 -3.8988 2.8584 47 1 -3.5695 -2.6333 4.1717 48 1 -2.5900 -3.6176 5.2670 49 1 -2.0872 -0.6839 4.6897 50 1 -3.0011 -1.2990 6.0837 51 1 -0.8623 -1.0655 7.0017 52 1 -0.8274 -2.7688 6.4741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044850826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:47 Heat of formation + Delta-G solvation = -43.245837 kcal Electronic energy + Delta-G solvation = -31815.269781 eV Core-core repulsion = 27815.462383 eV Total energy + Delta-G solvation = -3999.807398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.97210 -39.90536 -37.54846 -36.83323 -34.90670 -34.32394 -32.74434 -31.95853 -31.27125 -29.77714 -28.91232 -27.13706 -26.05884 -24.31290 -24.07635 -23.12573 -22.01876 -20.85724 -20.25601 -19.01943 -18.33892 -17.76851 -17.50388 -16.88169 -16.73529 -15.80053 -15.36304 -15.08198 -14.64527 -14.44401 -14.29548 -14.22640 -13.86727 -13.77119 -13.66445 -13.45754 -13.39589 -13.20632 -12.82186 -12.61449 -12.44893 -12.36936 -12.16753 -11.99219 -11.71015 -11.57247 -11.33257 -11.09273 -11.07528 -10.97269 -10.91018 -10.87237 -10.77965 -10.50746 -10.26161 -10.05970 -9.81911 -9.61085 -9.36299 -8.98645 -8.58190 -8.28244 -7.31773 -5.80925 -3.16779 2.44182 2.71653 2.75108 3.26969 3.35506 3.38834 3.44712 4.23604 4.45468 4.50326 4.55508 4.55840 4.58356 4.90125 4.98428 5.04781 5.07859 5.11689 5.12158 5.15400 5.22304 5.31072 5.33031 5.40288 5.46962 5.50279 5.54973 5.58652 5.65576 5.70671 5.71982 5.81758 5.85623 5.93835 5.95335 6.01336 6.12155 6.13402 6.23825 6.31586 6.37407 6.49045 6.59091 6.60853 6.68140 6.94269 7.20317 7.62459 7.94972 8.05948 8.34579 8.38259 9.16239 9.89127 10.08417 11.37328 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.003165 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.242732 B = 8843.894861 C = 9148.517370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.145 3.855 3 H 0.069 0.931 4 C -0.135 4.135 5 C 0.180 3.820 6 H 0.060 0.940 7 N -0.747 5.747 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.933 5.933 12 Si 0.878 3.122 13 H -0.283 1.283 14 H -0.278 1.278 15 H -0.290 1.290 16 C -0.148 4.148 17 C 0.111 3.889 18 N -0.600 5.600 19 C 0.501 3.499 20 O -0.532 6.532 21 C 0.090 3.910 22 N -0.590 5.590 23 C 0.116 3.884 24 C -0.154 4.154 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.134 4.134 28 C 0.520 3.480 29 O -0.546 6.546 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.095 0.905 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.689 -15.541 12.876 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.042 3.958 3 H 0.087 0.913 4 C -0.174 4.174 5 C 0.070 3.930 6 H 0.078 0.922 7 N -0.391 5.391 8 C -0.373 4.373 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.708 3.292 13 H -0.210 1.210 14 H -0.204 1.204 15 H -0.216 1.216 16 C -0.189 4.189 17 C -0.011 4.011 18 N -0.334 5.334 19 C 0.287 3.713 20 O -0.410 6.410 21 C -0.036 4.036 22 N -0.322 5.322 23 C -0.007 4.007 24 C -0.192 4.192 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.174 4.174 28 C 0.309 3.691 29 O -0.423 6.423 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.113 0.887 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.720 -14.869 12.831 27.132 hybrid contribution -0.362 1.068 0.357 1.183 sum -19.082 -13.800 13.188 26.991 Atomic orbital electron populations 1.22164 0.93020 1.03048 1.00731 1.21225 0.95053 0.95598 0.83949 0.91277 1.22271 0.97385 1.00529 0.97227 1.20151 0.90166 0.87140 0.95556 0.92226 1.42885 1.14230 1.05193 1.76748 1.19057 0.87972 0.95907 1.34407 0.89124 1.24643 0.96022 0.97082 1.01103 1.69692 1.13500 1.21995 1.52843 0.86658 0.79857 0.83415 0.79222 1.20994 1.20429 1.21650 1.22490 1.01951 0.97897 0.96591 1.21756 0.79154 1.01769 0.98412 1.48205 1.07733 1.57263 1.20162 1.20939 0.86457 0.80538 0.83339 1.90646 1.17171 1.56755 1.76388 1.21478 0.90276 1.00864 0.90985 1.47453 1.32369 1.24025 1.28392 1.21831 0.92000 0.85457 1.01401 1.21963 0.94253 1.04054 0.98902 1.21115 0.99467 0.97456 0.97330 1.21209 0.95471 0.99215 0.99202 1.21969 0.93427 1.03811 0.98188 1.20539 0.84995 0.82501 0.81110 1.90735 1.51775 1.26663 1.73145 0.90675 0.94091 0.92038 0.90697 0.91674 0.80580 0.93027 0.92924 0.90209 0.90993 0.90095 0.87683 0.87039 0.89897 0.90584 0.88267 0.91192 0.91875 0.92339 0.91057 0.90947 0.88664 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 7.62 37.16 0.28 -1.68 16 2 C 0.14 2.29 3.19 -67.61 -0.22 2.07 16 3 H 0.07 1.25 6.64 -51.93 -0.34 0.91 16 4 C -0.14 -2.05 5.08 -26.62 -0.14 -2.19 16 5 C 0.18 3.16 3.10 -67.89 -0.21 2.95 16 6 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 7 N -0.75 -16.56 4.11 -53.38 -0.22 -16.78 16 8 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 11 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 12 Si 0.88 22.06 27.74 -169.99 -4.71 17.35 16 13 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 C -0.15 -2.23 5.78 -26.61 -0.15 -2.38 16 17 C 0.11 1.63 6.09 -3.72 -0.02 1.61 16 18 N -0.60 -8.93 2.97 -165.23 -0.49 -9.42 16 19 C 0.50 7.19 7.57 -10.99 -0.08 7.11 16 20 O -0.53 -8.49 9.78 5.56 0.05 -8.44 16 21 C 0.09 1.04 4.23 -5.19 -0.02 1.02 16 22 N -0.59 -6.36 1.96 -174.60 -0.34 -6.71 16 23 C 0.12 0.85 5.90 -3.67 -0.02 0.83 16 24 C -0.15 -1.23 5.74 -27.35 -0.16 -1.39 16 25 C -0.12 -0.80 5.27 -27.96 -0.15 -0.95 16 26 C -0.11 -0.93 5.67 -27.31 -0.15 -1.09 16 27 C -0.13 -1.17 5.57 -27.49 -0.15 -1.33 16 28 C 0.52 6.64 6.81 -11.25 -0.08 6.57 16 29 O -0.55 -9.51 16.59 5.56 0.09 -9.42 16 30 H 0.07 1.24 6.54 -51.93 -0.34 0.91 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.91 6.95 -51.93 -0.36 0.54 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.36 8.12 3.92 -40.82 -0.16 7.96 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.07 0.83 5.93 -51.93 -0.31 0.53 16 40 H 0.08 1.42 7.74 -51.92 -0.40 1.02 16 41 H 0.11 0.88 7.63 -51.93 -0.40 0.49 16 42 H 0.11 1.41 6.93 -51.93 -0.36 1.05 16 43 H 0.08 0.50 7.77 -51.93 -0.40 0.10 16 44 H 0.08 0.41 6.73 -51.93 -0.35 0.06 16 45 H 0.10 1.15 5.70 -51.93 -0.30 0.85 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.31 7.88 -51.93 -0.41 -0.10 16 49 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.83 8.13 -51.93 -0.42 0.40 16 52 H 0.09 0.55 6.77 -51.93 -0.35 0.19 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -33.76 384.11 -9.29 -43.05 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.71 Total: 7.99 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.52 Total: 4.58 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.28 Total: -60.90 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.15 Total: -17.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.76 -9.29 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.199 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds