Wall clock time and date at job start Tue Mar 31 2020 19:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.58921 * 2 1 4 4 C 1.53189 * 109.58954 * 239.71553 * 2 1 3 5 5 C 1.53034 * 109.31729 * 185.43696 * 4 2 1 6 6 H 1.08996 * 109.46177 * 301.35975 * 5 4 2 7 7 N 1.46501 * 109.46429 * 181.38636 * 5 4 2 8 8 C 1.36936 * 120.00755 * 154.99892 * 7 5 4 9 9 H 1.08001 * 119.99226 * 0.02562 * 8 7 5 10 10 C 1.38803 * 120.00308 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00408 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99867 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47256 * 359.97438 * 12 10 8 14 14 H 1.48509 * 109.47218 * 120.00175 * 12 10 8 15 15 H 1.48504 * 109.47400 * 239.99854 * 12 10 8 16 16 C 1.53041 * 109.54220 * 61.36528 * 5 4 2 17 17 C 1.53194 * 109.30779 * 298.63877 * 16 5 4 18 18 N 1.46925 * 108.77949 * 54.63409 * 17 16 5 19 19 C 1.34770 * 120.63569 * 126.36592 * 18 17 16 20 20 O 1.21281 * 120.00328 * 185.09030 * 19 18 17 21 21 C 1.50703 * 119.99807 * 5.09479 * 19 18 17 22 22 N 1.46498 * 109.47033 * 179.97438 * 21 19 18 23 23 C 1.47195 * 119.78572 * 89.99903 * 22 21 19 24 24 C 1.52985 * 108.66488 * 251.95277 * 23 22 21 25 25 C 1.51781 * 110.87632 * 273.53509 * 24 23 22 26 26 C 1.51797 * 113.80917 * 66.99902 * 25 24 23 27 27 C 1.53063 * 110.74664 * 293.18274 * 26 25 24 28 28 C 1.33371 * 119.78380 * 269.71879 * 22 21 19 29 29 O 1.21288 * 119.89160 * 359.72253 * 28 22 21 30 30 H 1.08997 * 109.47328 * 183.87223 * 1 2 3 31 31 H 1.09001 * 109.47155 * 303.87602 * 1 2 3 32 32 H 1.09000 * 109.46968 * 63.87059 * 1 2 3 33 33 H 1.09001 * 109.49844 * 305.39083 * 4 2 1 34 34 H 1.08997 * 109.49744 * 65.47949 * 4 2 1 35 35 H 0.97001 * 119.99502 * 335.00009 * 7 5 4 36 36 H 0.96999 * 120.00228 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.49239 * 58.58426 * 16 5 4 38 38 H 1.08992 * 109.50381 * 178.65290 * 16 5 4 39 39 H 1.09002 * 109.58622 * 174.41839 * 17 16 5 40 40 H 1.08995 * 109.58757 * 294.83802 * 17 16 5 41 41 H 1.09002 * 109.46753 * 299.99616 * 21 19 18 42 42 H 1.09001 * 109.47221 * 59.99375 * 21 19 18 43 43 H 1.08994 * 109.59969 * 11.70594 * 23 22 21 44 44 H 1.09003 * 109.60089 * 132.19365 * 23 22 21 45 45 H 1.08994 * 109.19799 * 33.89843 * 24 23 22 46 46 H 1.08997 * 109.19815 * 153.22984 * 24 23 22 47 47 H 1.08997 * 108.61669 * 188.11726 * 25 24 23 48 48 H 1.08997 * 108.61954 * 306.02166 * 25 24 23 49 49 H 1.08997 * 109.22295 * 53.50936 * 26 25 24 50 50 H 1.08997 * 109.21895 * 172.90001 * 26 25 24 51 51 H 1.09004 * 109.63497 * 204.62342 * 27 26 25 52 52 H 1.08997 * 109.63647 * 325.02075 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5677 -0.8434 -1.1729 6 1 4.0045 0.1527 -1.1019 7 7 4.0654 -1.5097 -2.3790 8 6 5.3490 -1.2900 -2.8025 9 1 5.9945 -0.6258 -2.2471 10 6 5.8202 -1.9208 -3.9456 11 7 5.0333 -2.7299 -4.6227 12 14 7.5710 -1.6205 -4.5236 13 1 8.2434 -0.6757 -3.5960 14 1 8.3129 -2.9068 -4.5446 15 1 7.5483 -1.0398 -5.8903 16 6 3.9604 -1.6609 0.0599 17 6 3.4685 -0.9436 1.3210 18 7 2.0253 -0.6991 1.1936 19 6 1.1721 -1.1086 2.1531 20 8 -0.0239 -0.9839 1.9946 21 6 1.7041 -1.7213 3.4230 22 7 0.5853 -2.0797 4.2982 23 6 -0.0230 -3.4163 4.1973 24 6 -1.4023 -3.2790 3.5498 25 6 -2.4617 -2.9750 4.5933 26 6 -2.3099 -1.6107 5.2414 27 6 -1.0353 -1.5509 6.0867 28 6 0.1281 -1.1948 5.1852 29 8 0.6432 -0.0997 5.2670 30 1 -0.3634 -1.0253 0.0694 31 1 -0.3633 0.5728 0.8532 32 1 -0.3633 0.4526 -0.9226 33 1 1.6049 -1.7246 -1.2921 34 1 1.7638 -0.1655 -2.1371 35 1 3.4857 -2.1065 -2.8776 36 1 5.3628 -3.1710 -5.4213 37 1 3.5036 -2.6489 0.0018 38 1 5.0448 -1.7631 0.0985 39 1 3.6575 -1.5684 2.1940 40 1 3.9920 0.0063 1.4288 41 1 2.2783 -2.6159 3.1819 42 1 2.3471 -1.0029 3.9315 43 1 0.6071 -4.0593 3.5829 44 1 -0.1276 -3.8466 5.1933 45 1 -1.3763 -2.4705 2.8193 46 1 -1.6553 -4.2108 3.0442 47 1 -3.4420 -3.0280 4.1196 48 1 -2.4112 -3.7356 5.3724 49 1 -2.2615 -0.8478 4.4645 50 1 -3.1724 -1.4187 5.8797 51 1 -1.1442 -0.7908 6.8604 52 1 -0.8567 -2.5214 6.5495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044850828.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:56 Heat of formation + Delta-G solvation = -49.998992 kcal Electronic energy + Delta-G solvation = -31183.273806 eV Core-core repulsion = 27183.173569 eV Total energy + Delta-G solvation = -4000.100237 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.98533 -39.87357 -37.36521 -36.83743 -34.92912 -34.50506 -32.75450 -31.94115 -31.27579 -29.54849 -28.72080 -26.99542 -26.06110 -24.32575 -24.09035 -22.93919 -21.88733 -20.84261 -20.22308 -19.38378 -18.68433 -17.51831 -17.17912 -16.90775 -16.76417 -15.69868 -15.38784 -15.11331 -14.82778 -14.46239 -14.32719 -14.02302 -13.83688 -13.72757 -13.68666 -13.34940 -13.34126 -13.20282 -12.86390 -12.65054 -12.46598 -12.18804 -12.07017 -12.02403 -11.61040 -11.57541 -11.37174 -11.08459 -10.96942 -10.94490 -10.89566 -10.83077 -10.76682 -10.46952 -10.23212 -9.86748 -9.85247 -9.73652 -9.37769 -8.94800 -8.61335 -8.37421 -7.01120 -5.80852 -3.10131 2.40489 2.68300 2.72120 3.21763 3.39903 3.45773 3.47935 4.22005 4.45962 4.50506 4.52723 4.55080 4.56363 4.87353 4.98210 5.03323 5.05487 5.12556 5.14520 5.16935 5.27172 5.29367 5.35687 5.40891 5.47983 5.49540 5.56018 5.61221 5.66688 5.71195 5.82246 5.83059 5.89835 5.93727 6.01874 6.11070 6.14353 6.23244 6.27609 6.36500 6.44979 6.49385 6.53989 6.74808 6.89641 7.02638 7.17787 7.55583 7.66011 8.01909 8.30665 8.37397 9.48761 10.06139 10.40795 11.41740 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023714 B = 0.002485 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.471573 B =11263.175221 C =11400.249372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.148 3.852 3 H 0.069 0.931 4 C -0.133 4.133 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.150 4.150 17 C 0.107 3.893 18 N -0.601 5.601 19 C 0.501 3.499 20 O -0.529 6.529 21 C 0.090 3.910 22 N -0.590 5.590 23 C 0.115 3.885 24 C -0.154 4.154 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.134 4.134 28 C 0.522 3.478 29 O -0.549 6.549 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.094 0.906 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 -1.712 21.488 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.044 3.956 3 H 0.087 0.913 4 C -0.172 4.172 5 C 0.068 3.932 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.191 4.191 17 C -0.017 4.017 18 N -0.336 5.336 19 C 0.288 3.712 20 O -0.406 6.406 21 C -0.037 4.037 22 N -0.321 5.321 23 C -0.008 4.008 24 C -0.192 4.192 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.174 4.174 28 C 0.310 3.690 29 O -0.427 6.427 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.113 0.887 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.258 -1.013 21.399 25.194 hybrid contribution 1.022 -0.282 -0.695 1.267 sum -12.236 -1.294 20.704 24.084 Atomic orbital electron populations 1.22154 0.92881 1.03468 1.00273 1.21298 0.95368 0.95012 0.83873 0.91319 1.22284 0.97485 1.00894 0.96581 1.20158 0.90950 0.94977 0.87070 0.93462 1.42440 1.13022 1.54325 1.26625 1.19274 0.89141 1.22143 1.06429 0.91114 1.24750 0.98179 0.99862 0.98172 1.69672 1.35323 1.33619 1.19437 0.86142 0.84476 0.77286 0.78418 1.20541 1.21892 1.21875 1.22671 1.01731 0.99958 0.94768 1.21875 0.79627 1.00683 0.99472 1.48200 1.07565 1.57481 1.20305 1.20942 0.86936 0.78590 0.84759 1.90671 1.15409 1.55472 1.79084 1.21494 0.89728 1.02347 0.90104 1.47460 1.34110 1.14992 1.35587 1.21860 0.94797 0.82698 1.01431 1.21962 0.93702 1.04021 0.99523 1.21126 0.99424 0.96563 0.98302 1.21214 0.95970 0.98545 0.99356 1.21968 0.93518 1.03934 0.98029 1.20526 0.83973 0.83939 0.80530 1.90715 1.59261 1.22144 1.70569 0.91223 0.91553 0.94084 0.91868 0.90735 0.78284 0.93541 0.92218 0.90569 0.90715 0.91310 0.87663 0.87057 0.89753 0.90531 0.88288 0.91062 0.91808 0.92324 0.91061 0.90940 0.88698 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 7.60 37.15 0.28 -1.62 16 2 C 0.15 2.16 3.49 -67.60 -0.24 1.92 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.13 -2.20 4.84 -26.62 -0.13 -2.33 16 5 C 0.18 3.35 2.73 -67.89 -0.19 3.16 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -17.49 5.12 -53.39 -0.27 -17.77 16 8 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 12 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 17 C 0.11 1.33 6.33 -3.71 -0.02 1.30 16 18 N -0.60 -8.21 2.97 -165.22 -0.49 -8.71 16 19 C 0.50 6.83 7.67 -10.99 -0.08 6.75 16 20 O -0.53 -8.20 9.63 5.56 0.05 -8.15 16 21 C 0.09 0.97 4.27 -5.19 -0.02 0.95 16 22 N -0.59 -6.12 1.96 -174.60 -0.34 -6.46 16 23 C 0.11 0.86 5.91 -3.67 -0.02 0.84 16 24 C -0.15 -1.27 5.74 -27.36 -0.16 -1.43 16 25 C -0.12 -0.81 5.28 -27.96 -0.15 -0.95 16 26 C -0.11 -0.90 5.67 -27.31 -0.15 -1.05 16 27 C -0.13 -1.11 5.56 -27.49 -0.15 -1.27 16 28 C 0.52 6.29 6.81 -11.25 -0.08 6.21 16 29 O -0.55 -8.92 16.59 5.55 0.09 -8.82 16 30 H 0.07 1.09 6.74 -51.93 -0.35 0.74 16 31 H 0.07 1.04 6.77 -51.93 -0.35 0.69 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 0.73 5.96 -51.93 -0.31 0.42 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.11 0.87 7.19 -51.93 -0.37 0.49 16 42 H 0.11 1.25 7.33 -51.93 -0.38 0.87 16 43 H 0.08 0.55 7.77 -51.93 -0.40 0.15 16 44 H 0.08 0.42 6.71 -51.93 -0.35 0.07 16 45 H 0.10 1.17 5.70 -51.93 -0.30 0.87 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 49 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.09 0.76 8.13 -51.93 -0.42 0.34 16 52 H 0.09 0.52 6.78 -51.93 -0.35 0.17 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -33.15 391.46 -9.78 -42.93 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -8.92 Total: 8.22 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.50 Total: 2.91 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.38 Total: -59.94 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.15 Total: -16.97 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.15 -9.78 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850828.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.065 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds