Wall clock time and date at job start Tue Mar 31 2020 20:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.91217 * 2 1 4 4 C 1.53993 * 109.91808 * 238.69378 * 2 1 3 5 5 H 1.08997 * 110.31443 * 120.50872 * 4 2 1 6 6 C 1.50699 * 110.30747 * 358.33994 * 4 2 1 7 7 O 1.21286 * 119.99617 * 273.08909 * 6 4 2 8 8 N 1.34767 * 120.00427 * 93.09408 * 6 4 2 9 9 C 1.46497 * 120.00489 * 179.97438 * 8 6 4 10 10 C 1.52999 * 109.47308 * 180.02562 * 9 8 6 11 11 H 1.09000 * 110.52735 * 305.70197 * 10 9 8 12 12 C 1.55058 * 110.59107 * 182.89397 * 10 9 8 13 13 C 1.55171 * 102.04277 * 204.97503 * 12 10 9 14 14 C 1.53435 * 103.91002 * 20.66329 * 13 12 10 15 15 C 1.53224 * 115.01384 * 132.39150 * 14 13 12 16 16 N 1.47712 * 85.89534 * 93.04255 * 15 14 13 17 17 C 1.36940 * 134.42888 * 204.11165 * 16 15 14 18 18 H 1.08000 * 120.00126 * 179.97438 * 17 16 15 19 19 C 1.38808 * 120.00106 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00078 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00037 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46987 * 60.00223 * 21 19 17 23 23 H 1.48504 * 109.46823 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47147 * 300.00033 * 21 19 17 25 25 C 1.47714 * 91.14064 * 24.11689 * 16 15 14 26 26 O 1.42971 * 108.17246 * 1.79893 * 14 13 12 27 27 C 1.54598 * 105.14210 * 239.42396 * 4 2 1 28 28 C 1.54940 * 102.91790 * 338.03917 * 27 4 2 29 29 N 1.47904 * 109.92077 * 121.10555 * 2 1 3 30 30 C 1.46904 * 110.99865 * 265.19791 * 29 2 1 31 31 H 1.09006 * 109.47219 * 303.46177 * 1 2 3 32 32 H 1.09001 * 109.47475 * 63.46195 * 1 2 3 33 33 H 1.09001 * 109.47459 * 183.46122 * 1 2 3 34 34 H 0.97008 * 119.99946 * 0.02562 * 8 6 4 35 35 H 1.09001 * 109.47117 * 300.00145 * 9 8 6 36 36 H 1.08998 * 109.47482 * 60.00036 * 9 8 6 37 37 H 1.09004 * 110.87119 * 323.01920 * 12 10 9 38 38 H 1.09006 * 110.86966 * 86.70235 * 12 10 9 39 39 H 1.09000 * 110.40660 * 262.10591 * 13 12 10 40 40 H 1.08997 * 110.74943 * 139.39048 * 13 12 10 41 41 H 1.09000 * 113.80044 * 207.28608 * 15 14 13 42 42 H 1.08998 * 113.80445 * 338.79472 * 15 14 13 43 43 H 0.96996 * 119.99776 * 179.97438 * 20 19 17 44 44 H 1.09004 * 113.80830 * 221.64475 * 25 16 15 45 45 H 1.08997 * 113.80927 * 90.12297 * 25 16 15 46 46 H 1.09006 * 110.72384 * 219.68596 * 27 4 2 47 47 H 1.08995 * 110.87971 * 96.46802 * 27 4 2 48 48 H 1.08995 * 110.67035 * 278.97743 * 28 27 4 49 49 H 1.09006 * 110.66259 * 155.85022 * 28 27 4 50 50 H 1.08998 * 109.47208 * 59.99722 * 30 29 2 51 51 H 1.08996 * 109.47025 * 179.97438 * 30 29 2 52 52 H 1.08993 * 109.47095 * 299.99700 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0545 -0.7523 -1.2370 5 1 2.6713 -0.0929 -1.8475 6 6 0.9045 -1.2929 -2.0471 7 8 0.4338 -2.3788 -1.7822 8 7 0.3991 -0.5698 -3.0659 9 6 -0.7185 -1.0955 -3.8537 10 6 -1.0963 -0.0861 -4.9397 11 1 -1.2966 0.8910 -4.5002 12 6 -2.3248 -0.5846 -5.7438 13 6 -2.1444 0.1497 -7.0988 14 6 -0.6553 0.5188 -7.1230 15 6 0.0746 0.1818 -8.4273 16 7 -0.2474 1.5630 -8.8402 17 6 -0.3875 2.1948 -10.0470 18 1 -0.6349 3.2455 -10.0810 19 6 -0.2126 1.4845 -11.2267 20 7 0.0885 0.2039 -11.1854 21 14 -0.4044 2.3462 -12.8731 22 1 0.5817 3.4522 -12.9707 23 1 -0.1678 1.3745 -13.9708 24 1 -1.7788 2.8969 -12.9864 25 6 -0.3578 1.9901 -7.4305 26 8 -0.0500 0.0079 -5.9328 27 6 2.9058 -1.9129 -0.6728 28 6 3.2681 -1.4172 0.7497 29 7 2.0338 -0.7184 1.1906 30 6 2.3212 0.2163 2.2869 31 1 -0.3634 0.5667 0.8574 32 1 -0.3634 0.4591 -0.9194 33 1 -0.3634 -1.0258 0.0620 34 1 0.7759 0.2986 -3.2780 35 1 -0.4242 -2.0362 -4.3191 36 1 -1.5749 -1.2653 -3.2012 37 1 -2.2868 -1.6653 -5.8809 38 1 -3.2540 -0.2860 -5.2582 39 1 -2.7618 1.0475 -7.1297 40 1 -2.3887 -0.5102 -7.9312 41 1 1.1414 -0.0017 -8.2996 42 1 -0.4219 -0.5830 -9.0244 43 1 0.2104 -0.2925 -12.0097 44 1 -1.1972 2.6583 -7.2375 45 1 0.5795 2.3477 -7.0044 46 1 3.8052 -2.0580 -1.2714 47 1 2.3240 -2.8333 -0.6240 48 1 4.1097 -0.7255 0.7134 49 1 3.4888 -2.2591 1.4059 50 1 1.4095 0.7480 2.5594 51 1 2.6897 -0.3382 3.1499 52 1 3.0770 0.9325 1.9650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053603968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:19 Heat of formation + Delta-G solvation = -16.840209 kcal Electronic energy + Delta-G solvation = -30085.574175 eV Core-core repulsion = 26086.911811 eV Total energy + Delta-G solvation = -3998.662364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.73774 -39.84440 -38.34381 -36.52736 -34.51816 -32.73622 -32.07913 -31.84396 -31.63526 -29.28535 -27.30072 -26.47193 -25.22817 -24.99367 -23.93227 -22.14436 -21.60726 -21.28342 -21.20664 -19.54534 -18.78223 -17.23800 -16.80351 -16.74281 -16.33597 -15.91841 -15.47104 -15.16950 -14.97859 -14.77841 -14.55995 -14.22605 -13.84653 -13.74864 -13.53397 -13.33272 -13.02065 -12.87481 -12.56872 -12.44123 -12.34072 -12.03871 -11.94481 -11.77186 -11.63622 -11.49619 -11.39925 -11.21233 -11.15403 -11.01528 -10.95856 -10.88501 -10.62483 -10.54820 -10.22816 -10.05882 -9.80265 -9.60970 -9.09491 -8.90887 -8.81472 -8.79290 -6.93392 -5.80512 -3.13340 2.55379 3.06628 3.37375 3.41265 3.43038 3.58422 4.00659 4.22797 4.23403 4.45072 4.57178 4.76113 4.83997 4.89670 4.91109 4.95894 5.02833 5.06757 5.09351 5.13909 5.14985 5.24076 5.33510 5.40606 5.44921 5.46223 5.47311 5.53045 5.56504 5.62757 5.65220 5.70951 5.74110 5.94639 5.96730 6.04451 6.07640 6.29629 6.34666 6.39285 6.48469 6.51838 6.57569 6.67038 6.69150 6.99532 7.21023 7.44116 7.49021 7.61057 7.93159 8.17108 9.00514 9.66470 10.54623 11.36866 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.002080 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.060286 B =13461.106329 C =13726.027496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.060 0.940 4 C -0.120 4.120 5 H 0.095 0.905 6 C 0.530 3.470 7 O -0.537 6.537 8 N -0.724 5.724 9 C 0.128 3.872 10 C 0.062 3.938 11 H 0.071 0.929 12 C -0.146 4.146 13 C -0.112 4.112 14 C 0.052 3.948 15 C 0.177 3.823 16 N -0.604 5.604 17 C -0.223 4.223 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.108 3.892 26 O -0.360 6.360 27 C -0.112 4.112 28 C 0.036 3.964 29 N -0.515 5.515 30 C 0.016 3.984 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.255 0.745 44 H 0.044 0.956 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.046 0.954 49 H 0.086 0.914 50 H 0.068 0.932 51 H 0.070 0.930 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -0.792 24.667 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.078 0.922 4 C -0.142 4.142 5 H 0.113 0.887 6 C 0.316 3.684 7 O -0.414 6.414 8 N -0.375 5.375 9 C 0.005 3.995 10 C 0.004 3.996 11 H 0.089 0.911 12 C -0.185 4.185 13 C -0.150 4.150 14 C 0.012 3.988 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.019 4.019 26 O -0.278 6.278 27 C -0.150 4.150 28 C -0.092 4.092 29 N -0.240 5.240 30 C -0.133 4.133 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.238 0.762 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.114 0.886 48 H 0.064 0.936 49 H 0.104 0.896 50 H 0.087 0.913 51 H 0.089 0.911 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.124 -1.990 24.727 24.832 hybrid contribution 0.715 1.756 -1.410 2.363 sum 1.838 -0.234 23.316 23.390 Atomic orbital electron populations 1.21957 0.93527 1.03630 1.01582 1.22240 0.96847 0.95503 0.88326 0.92162 1.22260 0.96161 0.99199 0.96587 0.88658 1.20124 0.83770 0.84760 0.79731 1.90690 1.61027 1.21114 1.68583 1.46022 1.36040 1.22680 1.32796 1.21434 0.89286 0.97347 0.91446 1.23303 0.88595 0.97611 0.90092 0.91107 1.23171 0.97554 1.01504 0.96223 1.22450 0.95027 1.00724 0.96813 1.24283 0.93085 0.95478 0.85956 1.22309 0.96494 0.89550 0.86492 1.45660 1.81526 1.06904 0.99189 1.18914 1.41331 0.93506 0.81244 0.90187 1.24803 1.01843 0.96083 0.97654 1.69803 1.53490 1.06825 1.26575 0.86178 0.77940 0.78259 0.83242 1.21154 1.21508 1.21040 1.22992 0.98105 0.93971 0.86812 1.88822 1.31850 1.85534 1.21572 1.22513 0.99280 0.98539 0.94677 1.23252 0.91107 0.98511 0.96314 1.64705 1.26718 1.26198 1.06351 1.22527 1.00649 0.95219 0.94896 0.92470 0.91994 0.90722 0.76175 0.90541 0.90405 0.90346 0.90453 0.90819 0.89840 0.94907 0.90352 0.93463 0.93835 0.94369 0.90523 0.88558 0.93580 0.89595 0.91281 0.91125 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.36 37.15 0.31 -1.08 16 2 C 0.08 0.69 3.09 -66.65 -0.21 0.49 16 3 H 0.06 0.45 7.73 -51.93 -0.40 0.05 16 4 C -0.12 -1.11 3.38 -90.41 -0.31 -1.42 16 5 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 6 C 0.53 6.28 4.75 -10.99 -0.05 6.23 16 7 O -0.54 -8.25 15.01 5.55 0.08 -8.16 16 8 N -0.72 -7.89 5.01 -60.30 -0.30 -8.19 16 9 C 0.13 1.51 5.41 -4.04 -0.02 1.49 16 10 C 0.06 0.79 3.37 -25.64 -0.09 0.70 16 11 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.15 -1.83 6.62 -24.49 -0.16 -1.99 16 13 C -0.11 -1.83 6.47 -25.36 -0.16 -2.00 16 14 C 0.05 0.99 1.56 -90.28 -0.14 0.85 16 15 C 0.18 4.25 7.00 -3.27 -0.02 4.23 16 16 N -0.60 -15.48 3.68 -181.61 -0.67 -16.14 16 17 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.12 11.39 55.49 0.63 -26.49 16 21 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.11 2.22 8.43 -3.26 -0.03 2.19 16 26 O -0.36 -6.06 10.99 -35.23 -0.39 -6.44 16 27 C -0.11 -1.02 6.55 -24.87 -0.16 -1.18 16 28 C 0.04 0.28 6.56 -1.90 -0.01 0.27 16 29 N -0.52 -4.57 5.18 -230.79 -1.20 -5.77 16 30 C 0.02 0.11 9.40 60.07 0.56 0.67 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.55 7.03 -51.93 -0.37 0.18 16 33 H 0.07 0.88 7.08 -51.93 -0.37 0.52 16 34 H 0.40 3.82 8.47 -40.82 -0.35 3.48 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.17 7.74 -51.93 -0.40 0.77 16 40 H 0.08 1.49 7.75 -51.93 -0.40 1.08 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 2.04 6.89 -51.93 -0.36 1.68 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.04 0.83 7.85 -51.93 -0.41 0.43 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.10 1.10 6.89 -51.93 -0.36 0.74 16 48 H 0.05 0.31 7.96 -51.93 -0.41 -0.10 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.03 0.17 8.00 -51.93 -0.42 -0.24 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -32.71 404.59 -10.79 -43.49 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -9.27 Total: 1.90 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -0.75 Total: 2.79 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -1.53 Total: -56.59 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.30 Total: -14.61 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.71 -10.79 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053603968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.655 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds