Wall clock time and date at job start Tue Mar 31 2020 20:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.06610 * 2 1 4 4 C 1.53991 * 109.91815 * 238.79563 * 2 1 3 5 5 H 1.09001 * 110.39301 * 120.46587 * 4 2 1 6 6 C 1.50696 * 110.31208 * 358.33523 * 4 2 1 7 7 O 1.21276 * 120.00500 * 275.59119 * 6 4 2 8 8 N 1.34777 * 119.99612 * 95.58462 * 6 4 2 9 9 C 1.46506 * 119.99903 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.46968 * 180.02562 * 9 8 6 11 11 H 1.09001 * 110.26688 * 60.62029 * 10 9 8 12 12 C 1.55005 * 110.30060 * 182.79733 * 10 9 8 13 13 C 1.55452 * 101.02696 * 155.00889 * 12 10 9 14 14 C 1.53764 * 102.01839 * 326.41337 * 13 12 10 15 15 C 1.53264 * 114.73101 * 151.73830 * 14 13 12 16 16 N 1.47705 * 85.92025 * 92.61114 * 15 14 13 17 17 C 1.36937 * 134.44162 * 204.18759 * 16 15 14 18 18 H 1.08006 * 119.99959 * 179.97438 * 17 16 15 19 19 C 1.38808 * 119.99938 * 359.95776 * 17 16 15 20 20 N 1.31620 * 119.99864 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47360 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47066 * 119.99852 * 21 19 17 24 24 H 1.48504 * 109.47185 * 239.99619 * 21 19 17 25 25 C 1.47714 * 91.12319 * 24.15643 * 16 15 14 26 26 O 1.42524 * 108.38069 * 20.94879 * 14 13 12 27 27 C 1.54597 * 105.13777 * 239.42220 * 4 2 1 28 28 C 1.54942 * 102.92483 * 338.04133 * 27 4 2 29 29 N 1.47900 * 109.91770 * 121.20121 * 2 1 3 30 30 C 1.46896 * 111.00483 * 265.20066 * 29 2 1 31 31 H 1.08993 * 109.47226 * 183.81704 * 1 2 3 32 32 H 1.08997 * 109.47073 * 303.82442 * 1 2 3 33 33 H 1.09006 * 109.46846 * 63.81997 * 1 2 3 34 34 H 0.97004 * 120.00049 * 359.72795 * 8 6 4 35 35 H 1.08995 * 109.47256 * 300.00198 * 9 8 6 36 36 H 1.08994 * 109.46702 * 60.00634 * 9 8 6 37 37 H 1.08994 * 111.10868 * 272.95612 * 12 10 9 38 38 H 1.09009 * 111.10708 * 37.07245 * 12 10 9 39 39 H 1.08996 * 110.92218 * 208.22762 * 13 12 10 40 40 H 1.09001 * 110.91834 * 84.59545 * 13 12 10 41 41 H 1.09003 * 113.80678 * 206.86334 * 15 14 13 42 42 H 1.09006 * 113.80124 * 338.36139 * 15 14 13 43 43 H 0.97004 * 119.99783 * 180.02562 * 20 19 17 44 44 H 1.08991 * 113.80067 * 221.59964 * 25 16 15 45 45 H 1.08994 * 113.90801 * 90.10484 * 25 16 15 46 46 H 1.09002 * 110.72616 * 96.40296 * 27 4 2 47 47 H 1.09010 * 110.72634 * 219.50816 * 27 4 2 48 48 H 1.08997 * 110.66981 * 155.84734 * 28 27 4 49 49 H 1.08996 * 110.66505 * 278.97899 * 28 27 4 50 50 H 1.09000 * 109.46708 * 302.47864 * 30 29 2 51 51 H 1.08999 * 109.46997 * 62.47160 * 30 29 2 52 52 H 1.09000 * 109.47282 * 182.47371 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 2.6710 -0.0904 -1.8491 6 6 0.9047 -1.2894 -2.0494 7 8 0.4044 -2.3551 -1.7583 8 7 0.4321 -0.5872 -3.0982 9 6 -0.6862 -1.1111 -3.8864 10 6 -1.0234 -0.1281 -5.0094 11 1 -0.1648 0.0012 -5.6684 12 6 -2.2501 -0.6300 -5.8131 13 6 -2.7978 0.7075 -6.3857 14 6 -2.4656 1.6985 -5.2580 15 6 -2.2398 3.1426 -5.7193 16 7 -3.6779 3.3425 -5.4481 17 6 -4.6275 4.2164 -5.9059 18 1 -5.6416 4.1527 -5.5396 19 6 -4.2868 5.1845 -6.8406 20 7 -3.0508 5.2627 -7.2863 21 14 -5.5823 6.3763 -7.4656 22 1 -6.8832 6.0800 -6.8137 23 1 -5.1722 7.7667 -7.1438 24 1 -5.7215 6.2292 -8.9368 25 6 -3.6821 2.2217 -4.4859 26 8 -1.4261 1.1388 -4.4596 27 6 2.9059 -1.9117 -0.6761 28 6 3.2681 -1.4185 0.7473 29 7 2.0338 -0.7204 1.1894 30 6 2.3211 0.2123 2.2873 31 1 -0.3633 -1.0253 0.0684 32 1 -0.3633 0.5720 0.8537 33 1 -0.3633 0.4534 -0.9223 34 1 0.8296 0.2672 -3.3286 35 1 -0.4080 -2.0729 -4.3173 36 1 -1.5560 -1.2395 -3.2422 37 1 -1.9459 -1.3045 -6.6134 38 1 -2.9808 -1.1050 -5.1583 39 1 -3.8739 0.6495 -6.5485 40 1 -2.2803 0.9775 -7.3063 41 1 -1.5847 3.7165 -5.0639 42 1 -1.9743 3.2314 -6.7727 43 1 -2.8126 5.9394 -7.9392 44 1 -4.5601 1.5804 -4.5615 45 1 -3.4584 2.5184 -3.4613 46 1 2.3214 -2.8305 -0.6289 47 1 3.8038 -2.0578 -1.2768 48 1 3.4888 -2.2615 1.4020 49 1 4.1097 -0.7267 0.7122 50 1 3.0444 0.9558 1.9525 51 1 1.4007 0.7115 2.5901 52 1 2.7313 -0.3383 3.1339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053603969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:24 Heat of formation + Delta-G solvation = -17.468829 kcal Electronic energy + Delta-G solvation = -30340.453614 eV Core-core repulsion = 26341.763990 eV Total energy + Delta-G solvation = -3998.689623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.69984 -39.83731 -38.29872 -36.55111 -34.47220 -32.68787 -32.08709 -31.86383 -31.56370 -29.26744 -27.27295 -26.43021 -25.13535 -24.94369 -23.92296 -22.13821 -21.66221 -21.20704 -21.18145 -19.50633 -18.75785 -17.18714 -16.90382 -16.57428 -16.51939 -15.79742 -15.43638 -15.13339 -14.98411 -14.80011 -14.56924 -14.11425 -13.79994 -13.71978 -13.42949 -13.17372 -12.91193 -12.80338 -12.58934 -12.36428 -12.33062 -12.12023 -11.88478 -11.77346 -11.60091 -11.42150 -11.37679 -11.20404 -11.09929 -10.98638 -10.98038 -10.83698 -10.69372 -10.51744 -10.34631 -10.01595 -9.77409 -9.59441 -9.06492 -8.83588 -8.74087 -8.73556 -6.92373 -5.80828 -3.13069 2.57599 3.08989 3.36425 3.41921 3.44493 3.65523 3.98952 4.26491 4.29663 4.45300 4.62341 4.74763 4.83322 4.88999 4.98205 4.99608 5.08575 5.10271 5.14285 5.16919 5.20612 5.29036 5.32140 5.40635 5.46763 5.51372 5.54911 5.57269 5.60819 5.69233 5.70879 5.76453 5.83499 5.91524 5.96114 6.07930 6.24309 6.34304 6.35162 6.42184 6.48925 6.58260 6.59285 6.71547 6.74542 7.01270 7.20628 7.48020 7.49546 7.69197 7.93678 8.20010 9.00962 9.66672 10.55390 11.36649 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.002351 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.467478 B =11908.689785 C =12820.233452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 H 0.061 0.939 4 C -0.119 4.119 5 H 0.093 0.907 6 C 0.529 3.471 7 O -0.539 6.539 8 N -0.722 5.722 9 C 0.125 3.875 10 C 0.067 3.933 11 H 0.074 0.926 12 C -0.148 4.148 13 C -0.112 4.112 14 C 0.057 3.943 15 C 0.165 3.835 16 N -0.605 5.605 17 C -0.219 4.219 18 H 0.082 0.918 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.118 3.882 26 O -0.365 6.365 27 C -0.111 4.111 28 C 0.036 3.964 29 N -0.515 5.515 30 C 0.016 3.984 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.040 0.960 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.045 0.955 50 H 0.028 0.972 51 H 0.070 0.930 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.514 -14.152 11.156 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 H 0.079 0.921 4 C -0.142 4.142 5 H 0.111 0.889 6 C 0.315 3.685 7 O -0.416 6.416 8 N -0.374 5.374 9 C 0.001 3.999 10 C 0.008 3.992 11 H 0.091 0.909 12 C -0.186 4.186 13 C -0.150 4.150 14 C 0.017 3.983 15 C 0.040 3.960 16 N -0.333 5.333 17 C -0.347 4.347 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.008 4.008 26 O -0.283 6.283 27 C -0.150 4.150 28 C -0.092 4.092 29 N -0.240 5.240 30 C -0.133 4.133 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.240 0.760 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.063 0.937 50 H 0.046 0.954 51 H 0.089 0.911 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.710 -14.925 11.554 22.755 hybrid contribution 0.094 1.937 -0.838 2.112 sum 12.805 -12.988 10.716 21.154 Atomic orbital electron populations 1.21966 0.93181 1.03580 1.02088 1.22245 0.97092 0.95432 0.88028 0.92097 1.22257 0.96095 0.99058 0.96743 0.88853 1.20143 0.84054 0.84480 0.79779 1.90681 1.59849 1.22464 1.68582 1.46003 1.35757 1.24437 1.31176 1.21556 0.89621 0.96091 0.92654 1.23169 0.97453 0.85002 0.93547 0.90861 1.23266 0.97038 0.98537 0.99798 1.22609 1.02655 0.91843 0.97883 1.24293 0.88098 0.94951 0.91003 1.22501 0.86279 0.87162 1.00107 1.45662 1.06054 1.35933 1.45651 1.19021 0.89441 1.07784 1.18407 0.90070 1.24793 0.96664 0.99239 0.99777 1.69831 1.16619 1.36436 1.33873 0.86033 0.80421 0.80828 0.78408 1.20426 1.21713 1.21681 1.22804 0.94420 0.89687 0.93901 1.88341 1.54891 1.32664 1.52408 1.22509 0.99091 0.98535 0.94818 1.23236 0.91265 0.98503 0.96187 1.64710 1.26458 1.26379 1.06406 1.22528 1.00906 0.95110 0.94748 0.90792 0.92455 0.91525 0.75994 0.90623 0.90869 0.90184 0.90342 0.89753 0.90383 0.95033 0.90648 0.93658 0.93690 0.94284 0.88678 0.90687 0.89671 0.93651 0.95372 0.91141 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.37 37.16 0.31 -1.45 16 2 C 0.08 0.81 3.09 -66.65 -0.21 0.60 16 3 H 0.06 0.56 7.70 -51.93 -0.40 0.16 16 4 C -0.12 -1.14 3.37 -90.42 -0.31 -1.44 16 5 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 6 C 0.53 6.36 4.73 -10.99 -0.05 6.30 16 7 O -0.54 -8.29 14.92 5.56 0.08 -8.20 16 8 N -0.72 -8.04 5.07 -60.29 -0.31 -8.35 16 9 C 0.12 1.46 5.40 -4.04 -0.02 1.44 16 10 C 0.07 0.84 3.52 -25.67 -0.09 0.75 16 11 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 12 C -0.15 -1.81 6.58 -24.37 -0.16 -1.97 16 13 C -0.11 -1.81 6.32 -25.03 -0.16 -1.96 16 14 C 0.06 1.07 1.68 -90.05 -0.15 0.92 16 15 C 0.17 3.90 7.01 -3.25 -0.02 3.88 16 16 N -0.60 -15.47 3.67 -181.28 -0.67 -16.13 16 17 C -0.22 -6.10 10.70 -15.06 -0.16 -6.26 16 18 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -26.95 11.39 55.49 0.63 -26.32 16 21 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.12 2.48 8.37 -3.24 -0.03 2.46 16 26 O -0.36 -6.01 10.67 -35.23 -0.38 -6.39 16 27 C -0.11 -0.99 6.56 -24.87 -0.16 -1.15 16 28 C 0.04 0.29 6.56 -1.89 -0.01 0.28 16 29 N -0.52 -5.04 5.18 -230.79 -1.20 -6.24 16 30 C 0.02 0.12 9.41 60.06 0.57 0.69 16 31 H 0.07 1.02 7.00 -51.93 -0.36 0.66 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.82 7.11 -51.93 -0.37 0.45 16 34 H 0.41 4.05 8.41 -40.82 -0.34 3.71 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.92 8.05 -51.92 -0.42 0.51 16 39 H 0.08 1.42 7.83 -51.93 -0.41 1.01 16 40 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.93 7.05 -51.93 -0.37 1.56 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.04 0.89 7.98 -51.93 -0.41 0.47 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 1.06 6.92 -51.93 -0.36 0.70 16 47 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.32 8.00 -51.93 -0.42 -0.10 16 50 H 0.03 0.20 7.99 -51.93 -0.42 -0.22 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 404.85 15.07 6.10 6.10 Total: -1.00 -32.46 404.85 -10.81 -43.27 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -9.31 Total: 2.59 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.75 Total: 2.75 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -1.54 Total: -57.03 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.29 Total: -14.59 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.46 -10.81 -43.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053603969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.804 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds