Wall clock time and date at job start Tue Mar 31 2020 20:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46833 * 2 1 4 4 C 1.52996 * 109.46968 * 119.99561 * 2 1 3 5 5 C 1.50696 * 109.47143 * 184.99938 * 4 2 1 6 6 O 1.21277 * 120.00069 * 0.02562 * 5 4 2 7 7 N 1.34785 * 120.00189 * 179.97438 * 5 4 2 8 8 C 1.47422 * 125.64657 * 0.02610 * 7 5 4 9 9 C 1.54907 * 104.83127 * 204.09143 * 8 7 5 10 10 C 1.55152 * 101.58309 * 322.98998 * 9 8 7 11 11 H 1.08996 * 110.72401 * 277.14203 * 10 9 8 12 12 N 1.46502 * 110.71867 * 153.86265 * 10 9 8 13 13 C 1.36938 * 119.99841 * 86.45829 * 12 10 9 14 14 H 1.08010 * 120.00052 * 359.97438 * 13 12 10 15 15 C 1.38809 * 120.00445 * 179.97438 * 13 12 10 16 16 N 1.31612 * 120.00357 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99639 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47273 * 89.99881 * 17 15 13 19 19 H 1.48501 * 109.47166 * 209.99870 * 17 15 13 20 20 H 1.48506 * 109.47029 * 329.99397 * 17 15 13 21 21 C 1.47020 * 125.64669 * 179.72124 * 7 5 4 22 22 H 1.09003 * 109.88251 * 298.39236 * 21 7 5 23 23 C 1.53001 * 109.88766 * 59.56257 * 21 7 5 24 24 N 1.46497 * 109.47474 * 239.99751 * 2 1 3 25 25 C 1.45748 * 117.94775 * 119.99643 * 24 2 1 26 26 C 1.52924 * 110.48822 * 160.92682 * 25 24 2 27 27 C 1.53345 * 108.67385 * 50.75489 * 26 25 24 28 28 C 1.53069 * 108.45474 * 292.45047 * 27 26 25 29 29 C 1.33356 * 117.94373 * 300.02119 * 24 2 1 30 30 O 1.21280 * 118.25062 * 2.24954 * 29 24 2 31 31 H 1.08997 * 109.47027 * 60.00581 * 1 2 3 32 32 H 1.09002 * 109.46833 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47573 * 300.00390 * 1 2 3 34 34 H 1.09001 * 109.47207 * 305.00331 * 4 2 1 35 35 H 1.09000 * 109.47413 * 65.00238 * 4 2 1 36 36 H 1.09005 * 110.36759 * 322.93410 * 8 7 5 37 37 H 1.09003 * 110.36727 * 85.24929 * 8 7 5 38 38 H 1.08995 * 111.00540 * 81.06908 * 9 8 7 39 39 H 1.09005 * 111.00211 * 204.91448 * 9 8 7 40 40 H 0.96990 * 120.00409 * 266.45252 * 12 10 9 41 41 H 0.97002 * 119.99896 * 180.02562 * 16 15 13 42 42 H 1.08993 * 109.46846 * 58.53970 * 23 21 7 43 43 H 1.08993 * 109.47275 * 178.54691 * 23 21 7 44 44 H 1.09005 * 109.46235 * 298.54628 * 23 21 7 45 45 H 1.08998 * 109.30032 * 40.61794 * 25 24 2 46 46 H 1.08999 * 109.30571 * 281.23999 * 25 24 2 47 47 H 1.09001 * 109.60061 * 291.00283 * 26 25 24 48 48 H 1.08996 * 109.60501 * 170.51087 * 26 25 24 49 49 H 1.09002 * 109.67371 * 52.20511 * 27 26 25 50 50 H 1.09004 * 109.67368 * 172.70258 * 27 26 25 51 51 H 1.08995 * 109.40188 * 169.04476 * 28 27 26 52 52 H 1.08994 * 109.40577 * 288.79250 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5418 -0.6148 1.3128 6 8 4.1449 -0.0204 0.4446 7 7 4.2148 -1.1795 2.3350 8 6 3.6106 -1.9273 3.4526 9 6 4.6394 -1.8174 4.6054 10 6 5.9826 -1.9008 3.8333 11 1 6.2482 -2.9387 3.6325 12 7 7.0499 -1.2254 4.5756 13 6 7.7569 -1.9066 5.5302 14 1 7.5274 -2.9417 5.7362 15 6 8.7686 -1.2669 6.2331 16 7 9.4484 -1.9217 7.1502 17 14 9.1650 0.5236 5.8773 18 1 8.3435 1.3962 6.7542 19 1 10.6051 0.7733 6.1398 20 1 8.8617 0.8246 4.4551 21 6 5.6736 -1.1571 2.5167 22 1 6.1591 -1.6613 1.6811 23 6 6.1641 0.2891 2.6116 24 7 2.0184 -0.6906 -1.1961 25 6 2.8530 0.0603 -2.1255 26 6 3.6414 -0.8916 -3.0260 27 6 2.6686 -1.9063 -3.6388 28 6 2.1402 -2.8076 -2.5201 29 6 1.6711 -1.9668 -1.3664 30 8 0.9370 -2.4763 -0.5464 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.6053 -0.2616 2.1370 35 1 1.7517 -1.7714 1.2057 36 1 2.6635 -1.4735 3.7446 37 1 3.4623 -2.9708 3.1746 38 1 4.5452 -0.8630 5.1235 39 1 4.5365 -2.6498 5.3016 40 1 7.2558 -0.2958 4.3908 41 1 10.1551 -1.4745 7.6417 42 1 5.6688 0.7867 3.4453 43 1 7.2421 0.2973 2.7720 44 1 5.9305 0.8133 1.6849 45 1 3.5487 0.6828 -1.5628 46 1 2.2208 0.6989 -2.7423 47 1 4.3925 -1.4159 -2.4352 48 1 4.1274 -0.3252 -3.8204 49 1 1.8380 -1.3803 -4.1096 50 1 3.1887 -2.5106 -4.3821 51 1 1.3084 -3.4027 -2.8970 52 1 2.9361 -3.4721 -2.1840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074648993.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:19 Heat of formation + Delta-G solvation = -48.378046 kcal Electronic energy + Delta-G solvation = -31399.379605 eV Core-core repulsion = 27399.349658 eV Total energy + Delta-G solvation = -4000.029948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10035 -39.86287 -37.67052 -36.57009 -35.38705 -34.32351 -32.03103 -31.37168 -30.83070 -29.74831 -29.57425 -27.71044 -25.48019 -24.68763 -23.69461 -23.07325 -22.57189 -21.32451 -19.66116 -18.77377 -18.47644 -17.96722 -17.19314 -16.80840 -16.16912 -16.00983 -15.69085 -15.11541 -14.93958 -14.50267 -14.35078 -14.16883 -14.10514 -13.81725 -13.60654 -13.41823 -13.12729 -12.88758 -12.70309 -12.45780 -12.28883 -12.17544 -11.98557 -11.90558 -11.80359 -11.70032 -11.50809 -11.38901 -11.24169 -11.20301 -11.15138 -11.00394 -10.90656 -10.56346 -10.33886 -10.07308 -9.66213 -9.50214 -9.45598 -8.99487 -8.78447 -8.45015 -7.35126 -5.83487 -3.20194 2.51825 2.78435 2.87620 3.12090 3.32383 3.35342 3.41300 4.31826 4.49513 4.52106 4.52906 4.53160 4.57367 4.73353 4.95152 5.03204 5.04956 5.14451 5.15827 5.18405 5.29744 5.34650 5.40847 5.43074 5.45234 5.51616 5.53624 5.55975 5.57746 5.60718 5.64102 5.67395 5.77691 5.83530 5.86138 5.92976 5.97390 6.02837 6.09526 6.18471 6.37453 6.45683 6.50453 6.56210 6.59858 6.84149 7.41672 7.73206 7.92123 8.06975 8.33435 8.35435 9.12961 9.85144 10.04151 11.34516 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002828 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.042347 B = 9898.585271 C =10202.936440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.161 3.839 3 H 0.091 0.909 4 C -0.159 4.159 5 C 0.530 3.470 6 O -0.546 6.546 7 N -0.610 5.610 8 C 0.098 3.902 9 C -0.152 4.152 10 C 0.179 3.821 11 H 0.070 0.930 12 N -0.741 5.741 13 C -0.248 4.248 14 H 0.092 0.908 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.879 3.121 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.128 3.872 22 H 0.072 0.928 23 C -0.162 4.162 24 N -0.583 5.583 25 C 0.114 3.886 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.135 4.135 29 C 0.516 3.484 30 O -0.557 6.557 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.367 0.633 41 H 0.260 0.740 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.096 0.904 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.215 3.145 -20.438 27.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.109 0.891 4 C -0.200 4.200 5 C 0.319 3.681 6 O -0.424 6.424 7 N -0.344 5.344 8 C -0.025 4.025 9 C -0.193 4.193 10 C 0.068 3.932 11 H 0.088 0.912 12 N -0.386 5.386 13 C -0.377 4.377 14 H 0.110 0.890 15 C -0.188 4.188 16 N -0.578 5.578 17 Si 0.709 3.291 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.202 1.202 21 C 0.024 3.976 22 H 0.090 0.910 23 C -0.220 4.220 24 N -0.314 5.314 25 C -0.009 4.009 26 C -0.172 4.172 27 C -0.161 4.161 28 C -0.175 4.175 29 C 0.305 3.695 30 O -0.437 6.437 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.204 0.796 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.092 0.908 51 H 0.115 0.885 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.158 3.070 -20.397 27.480 hybrid contribution 0.479 1.260 0.012 1.348 sum -17.679 4.330 -20.385 27.328 Atomic orbital electron populations 1.22243 0.94316 1.04624 1.01655 1.20790 0.94133 0.96078 0.83316 0.89090 1.22188 0.92347 1.05911 0.99534 1.20254 0.89542 0.78035 0.80232 1.90573 1.70406 1.43143 1.38322 1.48610 1.07863 1.53997 1.23912 1.22391 0.97251 0.95942 0.86960 1.23494 0.96058 1.03094 0.96622 1.21140 0.88047 0.95748 0.88310 0.91198 1.42959 1.39465 1.11752 1.44424 1.19062 1.11258 0.96891 1.10523 0.89050 1.24646 0.98243 0.97535 0.98348 1.69689 1.25243 1.36055 1.26817 0.86659 0.77819 0.86701 0.77923 1.20965 1.21538 1.20224 1.21778 0.79599 0.97252 0.98927 0.91033 1.22062 1.01794 0.96018 1.02105 1.47228 1.49892 1.11110 1.23199 1.21484 0.93634 0.94368 0.91371 1.21842 0.98286 0.97830 0.99224 1.21663 0.99412 0.97632 0.97385 1.21673 1.03115 0.98387 0.94313 1.20109 0.80280 0.81815 0.87334 1.90600 1.37405 1.70870 1.44855 0.92729 0.89558 0.91844 0.88497 0.86554 0.91227 0.91525 0.90782 0.90121 0.79621 0.92943 0.92662 0.91071 0.91645 0.88616 0.92596 0.90732 0.90074 0.91354 0.90778 0.88510 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.08 37.16 0.34 -1.25 16 2 C 0.16 1.69 2.20 -67.93 -0.15 1.54 16 3 H 0.09 0.94 7.60 -51.93 -0.39 0.54 16 4 C -0.16 -1.84 4.01 -27.89 -0.11 -1.95 16 5 C 0.53 7.54 7.49 -10.98 -0.08 7.45 16 6 O -0.55 -8.58 12.12 5.56 0.07 -8.52 16 7 N -0.61 -8.96 3.08 -163.01 -0.50 -9.46 16 8 C 0.10 1.27 6.69 -2.53 -0.02 1.26 16 9 C -0.15 -2.41 6.77 -24.59 -0.17 -2.57 16 10 C 0.18 3.31 3.45 -66.09 -0.23 3.08 16 11 H 0.07 1.33 8.12 -51.93 -0.42 0.90 16 12 N -0.74 -16.91 4.82 -51.64 -0.25 -17.16 16 13 C -0.25 -6.75 10.46 -15.06 -0.16 -6.91 16 14 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 15 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 16 N -0.93 -28.71 13.97 55.49 0.78 -27.93 16 17 Si 0.88 21.74 27.74 -169.99 -4.71 17.02 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.42 6.50 56.52 0.37 -6.05 16 21 C 0.13 2.15 3.49 -66.94 -0.23 1.92 16 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 23 C -0.16 -2.79 7.93 37.16 0.29 -2.49 16 24 N -0.58 -6.16 2.24 -167.34 -0.37 -6.54 16 25 C 0.11 1.03 5.73 -4.49 -0.03 1.00 16 26 C -0.13 -1.04 6.02 -26.59 -0.16 -1.20 16 27 C -0.12 -0.82 6.03 -26.52 -0.16 -0.98 16 28 C -0.14 -1.16 6.04 -28.06 -0.17 -1.33 16 29 C 0.52 5.92 6.87 -11.83 -0.08 5.84 16 30 O -0.56 -7.80 12.46 5.56 0.07 -7.73 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.98 5.84 -51.93 -0.30 0.68 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.95 7.85 -51.93 -0.41 0.55 16 35 H 0.12 1.50 5.90 -51.93 -0.31 1.20 16 36 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.37 8.31 2.80 -40.82 -0.11 8.20 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.05 0.96 8.05 -51.93 -0.42 0.54 16 43 H 0.07 1.32 6.71 -51.93 -0.35 0.97 16 44 H 0.06 1.11 6.74 -51.93 -0.35 0.76 16 45 H 0.10 1.03 6.26 -51.93 -0.32 0.71 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 50 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -32.21 390.43 -9.11 -41.33 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -8.86 Total: 9.55 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.21 Total: 3.56 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.35 Total: -61.09 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.14 Total: -16.25 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.21 -9.11 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074648993.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.052 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds