Wall clock time and date at job start Tue Mar 31 2020 20:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47049 * 2 1 4 4 C 1.52997 * 109.47141 * 239.99875 * 2 1 3 5 5 C 1.50692 * 109.47523 * 174.99849 * 4 2 1 6 6 O 1.21289 * 119.99836 * 359.97438 * 5 4 2 7 7 N 1.34780 * 120.00414 * 179.97438 * 5 4 2 8 8 C 1.47426 * 125.64645 * 0.02590 * 7 5 4 9 9 C 1.54912 * 104.83261 * 203.86243 * 8 7 5 10 10 C 1.55155 * 101.57968 * 322.99067 * 9 8 7 11 11 H 1.08996 * 110.72196 * 277.13505 * 10 9 8 12 12 N 1.46498 * 110.71914 * 153.86706 * 10 9 8 13 13 C 1.36933 * 120.00221 * 86.44979 * 12 10 9 14 14 H 1.07995 * 120.00164 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99936 * 179.97438 * 13 12 10 16 16 N 1.31610 * 120.00202 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99764 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47187 * 90.00436 * 17 15 13 19 19 H 1.48503 * 109.46955 * 210.00185 * 17 15 13 20 20 H 1.48498 * 109.47097 * 330.00465 * 17 15 13 21 21 C 1.47024 * 125.64847 * 179.71552 * 7 5 4 22 22 H 1.08995 * 109.88316 * 298.62177 * 21 7 5 23 23 C 1.52998 * 109.88215 * 59.79117 * 21 7 5 24 24 N 1.46496 * 109.47320 * 119.99692 * 2 1 3 25 25 C 1.45758 * 117.95063 * 239.73667 * 24 2 1 26 26 C 1.53095 * 110.38804 * 160.74287 * 25 24 2 27 27 C 1.53344 * 108.52966 * 51.11735 * 26 25 24 28 28 C 1.53075 * 108.42477 * 292.30777 * 27 26 25 29 29 C 1.33360 * 117.94723 * 59.99997 * 24 2 1 30 30 O 1.21282 * 118.24173 * 2.24527 * 29 24 2 31 31 H 1.08994 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46724 * 300.00208 * 1 2 3 33 33 H 1.08996 * 109.47172 * 60.00306 * 1 2 3 34 34 H 1.08999 * 109.47395 * 54.99694 * 4 2 1 35 35 H 1.09007 * 109.46991 * 295.00343 * 4 2 1 36 36 H 1.09002 * 110.36518 * 322.69812 * 8 7 5 37 37 H 1.08997 * 110.36787 * 85.02191 * 8 7 5 38 38 H 1.08997 * 111.00012 * 81.06132 * 9 8 7 39 39 H 1.08989 * 111.00345 * 204.91519 * 9 8 7 40 40 H 0.97001 * 119.99810 * 266.45323 * 12 10 9 41 41 H 0.97002 * 120.00649 * 179.97438 * 16 15 13 42 42 H 1.09006 * 109.47447 * 58.54673 * 23 21 7 43 43 H 1.08999 * 109.46933 * 178.54374 * 23 21 7 44 44 H 1.09001 * 109.47522 * 298.54354 * 23 21 7 45 45 H 1.09003 * 109.29862 * 281.24282 * 25 24 2 46 46 H 1.09004 * 109.29811 * 40.61107 * 25 24 2 47 47 H 1.08998 * 109.81051 * 291.32576 * 26 25 24 48 48 H 1.09000 * 109.67844 * 170.83138 * 26 25 24 49 49 H 1.08995 * 109.67519 * 172.57674 * 27 26 25 50 50 H 1.09000 * 109.70186 * 52.05839 * 27 26 25 51 51 H 1.08995 * 109.40220 * 288.77009 * 28 27 26 52 52 H 1.08992 * 109.39888 * 169.02759 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3128 6 8 4.1450 -0.0203 -0.4446 7 7 4.2149 -1.1806 -2.3343 8 6 3.6106 -1.9286 -3.4518 9 6 4.7418 -2.8526 -3.9682 10 6 5.9863 -1.9398 -3.8094 11 1 6.0826 -1.2673 -4.6618 12 7 7.2000 -2.7428 -3.6414 13 6 7.8837 -3.1887 -4.7409 14 1 7.5284 -2.9481 -5.7319 15 6 9.0340 -3.9492 -4.5815 16 7 9.4673 -4.2421 -3.3738 17 14 9.9670 -4.5569 -6.0814 18 1 10.9858 -3.5497 -6.4723 19 1 10.6390 -5.8414 -5.7594 20 1 9.0180 -4.7627 -7.2049 21 6 5.6727 -1.1483 -2.5222 22 1 6.0099 -0.1174 -2.6295 23 6 6.3661 -1.8039 -1.3263 24 7 2.0184 -0.6905 1.1962 25 6 2.8579 0.0587 2.1226 26 6 2.8769 -0.6211 3.4942 27 6 3.2232 -2.1021 3.2993 28 6 2.0608 -2.7786 2.5684 29 6 1.6714 -1.9669 1.3665 30 8 1.0060 -2.5006 0.5044 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -0.2618 -2.1370 35 1 1.7516 -1.7716 -1.2055 36 1 2.7673 -2.5223 -3.0989 37 1 3.2913 -1.2443 -4.2378 38 1 4.8304 -3.7451 -3.3489 39 1 4.5828 -3.1182 -5.0132 40 1 7.5193 -2.9587 -2.7512 41 1 10.2709 -4.7738 -3.2624 42 1 6.0182 -2.8318 -1.2232 43 1 7.4446 -1.7996 -1.4844 44 1 6.1296 -1.2476 -0.4193 45 1 3.8727 0.1105 1.7280 46 1 2.4640 1.0696 2.2288 47 1 1.8971 -0.5333 3.9636 48 1 3.6290 -0.1498 4.1270 49 1 3.3713 -2.5752 4.2700 50 1 4.1325 -2.1917 2.7049 51 1 1.2079 -2.8603 3.2420 52 1 2.3650 -3.7753 2.2490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074648994.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:24 Heat of formation + Delta-G solvation = -52.562571 kcal Electronic energy + Delta-G solvation = -31492.727763 eV Core-core repulsion = 27492.516361 eV Total energy + Delta-G solvation = -4000.211402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.01332 -39.71835 -37.51280 -36.48946 -35.30189 -34.14929 -31.93382 -31.22343 -30.66418 -29.64105 -29.16814 -27.55134 -25.18967 -24.60503 -23.72530 -23.24821 -22.47737 -21.25370 -19.64478 -18.65735 -18.31455 -17.51041 -17.07811 -16.75396 -16.05989 -15.87165 -15.48863 -15.03812 -14.70264 -14.50460 -14.39599 -14.18929 -13.90887 -13.64023 -13.49217 -13.32534 -13.07753 -12.87543 -12.53670 -12.31669 -12.19012 -12.01692 -11.88367 -11.84316 -11.71164 -11.51667 -11.37958 -11.18338 -11.13862 -11.09892 -10.98469 -10.91228 -10.79361 -10.43835 -10.20446 -9.96975 -9.70480 -9.45728 -9.33031 -8.94430 -8.68713 -8.31606 -7.01857 -5.81563 -3.11136 2.60803 2.88579 2.96989 3.25187 3.41165 3.46634 3.48118 4.40358 4.55492 4.55714 4.59023 4.62504 4.65803 4.82204 5.08162 5.10829 5.13167 5.23168 5.25352 5.37269 5.39092 5.39831 5.48244 5.53466 5.57209 5.59807 5.62044 5.66419 5.68290 5.69403 5.74329 5.82695 5.84969 5.95100 6.04962 6.09243 6.13614 6.15186 6.25081 6.36309 6.52524 6.57722 6.59806 6.75220 6.85182 7.01319 7.49620 7.66443 7.86597 8.15652 8.36888 8.46136 9.48655 10.04136 10.39191 11.41017 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.002880 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.548920 B = 9718.860735 C =10359.149451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.161 3.839 3 H 0.091 0.909 4 C -0.162 4.162 5 C 0.530 3.470 6 O -0.547 6.547 7 N -0.609 5.609 8 C 0.097 3.903 9 C -0.153 4.153 10 C 0.173 3.827 11 H 0.062 0.938 12 N -0.718 5.718 13 C -0.244 4.244 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.130 3.870 22 H 0.069 0.931 23 C -0.155 4.155 24 N -0.583 5.583 25 C 0.113 3.887 26 C -0.135 4.135 27 C -0.125 4.125 28 C -0.134 4.134 29 C 0.516 3.484 30 O -0.558 6.558 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.391 0.609 41 H 0.256 0.744 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.095 0.905 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.384 9.038 11.829 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.057 3.943 3 H 0.109 0.891 4 C -0.202 4.202 5 C 0.319 3.681 6 O -0.426 6.426 7 N -0.343 5.343 8 C -0.026 4.026 9 C -0.194 4.194 10 C 0.061 3.939 11 H 0.079 0.921 12 N -0.361 5.361 13 C -0.375 4.375 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.739 3.261 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C 0.026 3.974 22 H 0.087 0.913 23 C -0.213 4.213 24 N -0.314 5.314 25 C -0.010 4.010 26 C -0.173 4.173 27 C -0.163 4.163 28 C -0.174 4.174 29 C 0.305 3.695 30 O -0.438 6.438 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.229 0.771 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.092 0.908 51 H 0.113 0.887 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.318 9.064 11.780 23.590 hybrid contribution 0.692 -0.486 -0.623 1.051 sum -17.627 8.577 11.157 22.555 Atomic orbital electron populations 1.22205 0.94473 1.04334 1.01670 1.20772 0.93903 0.96095 0.83513 0.89130 1.22224 0.92471 1.06194 0.99295 1.20227 0.89488 0.78084 0.80303 1.90572 1.70464 1.43483 1.38043 1.48621 1.08009 1.53787 1.23896 1.22370 0.97222 0.94388 0.88611 1.23535 0.95634 0.98967 1.01278 1.21181 0.87484 0.91722 0.93485 0.92055 1.42670 1.25487 1.60666 1.07293 1.19242 1.04601 1.26413 0.87214 0.91087 1.24749 0.98497 1.00937 0.96530 1.69654 1.25149 1.43202 1.19933 0.86177 0.79888 0.78022 0.81994 1.21684 1.21772 1.20719 1.21775 0.78960 0.99592 0.97058 0.91326 1.21964 1.01500 1.00408 0.97433 1.47208 1.49922 1.11157 1.23160 1.21560 0.96759 0.94413 0.88267 1.21918 1.02527 0.96125 0.96700 1.21654 0.98339 0.95224 1.01047 1.21647 1.00090 0.99986 0.95680 1.20082 0.79506 0.81594 0.88285 1.90591 1.40468 1.69542 1.43184 0.89932 0.92707 0.91777 0.88750 0.86171 0.91314 0.91793 0.90760 0.90673 0.77121 0.93395 0.92725 0.90441 0.92287 0.89340 0.91345 0.91444 0.89949 0.90787 0.90766 0.88707 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.08 37.16 0.34 -1.28 16 2 C 0.16 1.79 2.20 -67.93 -0.15 1.64 16 3 H 0.09 0.97 7.60 -51.93 -0.39 0.58 16 4 C -0.16 -2.00 4.01 -27.89 -0.11 -2.11 16 5 C 0.53 8.10 7.50 -10.99 -0.08 8.01 16 6 O -0.55 -9.24 12.10 5.55 0.07 -9.17 16 7 N -0.61 -9.63 3.08 -163.02 -0.50 -10.13 16 8 C 0.10 1.36 6.69 -2.53 -0.02 1.35 16 9 C -0.15 -2.61 6.77 -24.58 -0.17 -2.77 16 10 C 0.17 3.39 3.46 -66.10 -0.23 3.16 16 11 H 0.06 1.20 8.12 -51.93 -0.42 0.77 16 12 N -0.72 -17.55 5.02 -51.65 -0.26 -17.80 16 13 C -0.24 -6.59 9.98 -15.06 -0.15 -6.74 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 16 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 17 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.13 2.34 3.48 -66.95 -0.23 2.11 16 22 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 23 C -0.15 -2.95 7.95 37.16 0.30 -2.66 16 24 N -0.58 -6.65 2.24 -167.26 -0.37 -7.02 16 25 C 0.11 1.10 5.76 -4.39 -0.03 1.08 16 26 C -0.13 -1.02 6.03 -26.50 -0.16 -1.18 16 27 C -0.12 -1.05 6.03 -26.51 -0.16 -1.21 16 28 C -0.13 -1.30 6.03 -28.10 -0.17 -1.47 16 29 C 0.52 6.47 6.88 -11.87 -0.08 6.39 16 30 O -0.56 -8.41 12.45 5.56 0.07 -8.34 16 31 H 0.08 0.96 6.00 -51.93 -0.31 0.65 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.12 1.70 5.44 -51.92 -0.28 1.42 16 36 H 0.07 0.88 7.49 -51.93 -0.39 0.49 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.07 1.22 8.14 -51.94 -0.42 0.80 16 40 H 0.39 10.11 4.93 -40.82 -0.20 9.90 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.05 1.09 8.06 -51.93 -0.42 0.67 16 43 H 0.08 1.60 6.72 -51.93 -0.35 1.26 16 44 H 0.06 1.10 6.75 -51.93 -0.35 0.75 16 45 H 0.09 1.09 6.30 -51.93 -0.33 0.76 16 46 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 47 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 51 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -31.73 393.53 -9.47 -41.20 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -8.90 Total: 11.39 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.20 Total: 3.90 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.41 Total: -61.93 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.14 Total: -17.52 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.73 -9.47 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074648994.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.359 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds