Wall clock time and date at job start Tue Mar 31 2020 20:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47492 * 2 1 4 4 C 1.52992 * 109.47165 * 119.99885 * 2 1 3 5 5 N 1.46499 * 109.47058 * 65.00124 * 4 2 1 6 6 C 1.46764 * 124.34895 * 90.00131 * 5 4 2 7 7 C 1.54483 * 105.47006 * 196.99544 * 6 5 4 8 8 H 1.08997 * 110.97118 * 92.74330 * 7 6 5 9 9 C 1.50706 * 110.96683 * 216.46347 * 7 6 5 10 10 O 1.21286 * 120.00190 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99992 * 180.02562 * 9 7 6 12 12 C 1.47432 * 125.64737 * 0.04223 * 11 9 7 13 13 C 1.54914 * 104.83170 * 204.09316 * 12 11 9 14 14 C 1.55160 * 101.58029 * 322.99062 * 13 12 11 15 15 H 1.09004 * 110.87246 * 277.06711 * 14 13 12 16 16 N 1.46498 * 110.72044 * 153.86492 * 14 13 12 17 17 C 1.36943 * 119.99752 * 91.20000 * 16 14 13 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 C 1.47020 * 125.64987 * 180.02562 * 11 9 7 26 26 H 1.09004 * 109.88247 * 298.39087 * 25 11 9 27 27 C 1.53000 * 110.01515 * 59.48440 * 25 11 9 28 28 C 1.54628 * 101.76636 * 334.58244 * 7 6 5 29 29 C 1.34417 * 124.35022 * 269.97582 * 5 4 2 30 30 O 1.21282 * 124.94087 * 359.61418 * 29 5 4 31 31 H 1.09001 * 109.46909 * 59.99942 * 1 2 3 32 32 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46938 * 300.00073 * 1 2 3 34 34 H 1.09003 * 109.47427 * 240.00427 * 2 1 3 35 35 H 1.08989 * 109.47835 * 180.02562 * 3 2 1 36 36 H 1.09010 * 109.46749 * 300.00432 * 3 2 1 37 37 H 1.08998 * 109.46896 * 59.99260 * 3 2 1 38 38 H 1.08998 * 109.47594 * 304.99970 * 4 2 1 39 39 H 1.09003 * 109.47425 * 184.99973 * 4 2 1 40 40 H 1.09005 * 110.24935 * 77.99870 * 6 5 4 41 41 H 1.08998 * 110.32477 * 316.03107 * 6 5 4 42 42 H 1.08995 * 110.36653 * 322.93163 * 12 11 9 43 43 H 1.08997 * 110.36303 * 85.25705 * 12 11 9 44 44 H 1.08996 * 111.00179 * 204.91848 * 13 12 11 45 45 H 1.08994 * 111.00201 * 81.06313 * 13 12 11 46 46 H 0.97001 * 120.00384 * 271.48355 * 16 14 13 47 47 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.47068 * 177.88694 * 27 25 11 49 49 H 1.08996 * 109.46973 * 297.88863 * 27 25 11 50 50 H 1.09007 * 109.46897 * 57.88710 * 27 25 11 51 51 H 1.09003 * 110.48293 * 143.48154 * 28 7 6 52 52 H 1.09005 * 110.48411 * 266.11944 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1905 6 6 2.4688 -3.1911 0.5843 7 6 1.5060 -4.3789 0.3639 8 1 1.0729 -4.3497 -0.6359 9 6 2.2046 -5.6918 0.6078 10 8 3.3732 -5.7059 0.9320 11 7 1.5308 -6.8503 0.4656 12 6 0.1143 -6.9784 0.0773 13 6 -0.3293 -8.3509 0.6423 14 6 0.9468 -9.2057 0.4216 15 1 0.9866 -9.5878 -0.5985 16 7 1.0076 -10.3052 1.3878 17 6 0.4616 -11.5217 1.0759 18 1 -0.0099 -11.6718 0.1159 19 6 0.5141 -12.5619 1.9935 20 7 1.0883 -12.3787 3.1637 21 14 -0.2300 -14.2215 1.5678 22 1 -0.8098 -14.1682 0.2018 23 1 0.8259 -15.2646 1.6165 24 1 -1.2971 -14.5513 2.5465 25 6 2.0866 -8.1957 0.6717 26 1 2.8996 -8.3728 -0.0324 27 6 2.6008 -8.3358 2.1059 28 6 0.4293 -4.1164 1.4422 29 6 0.5037 -2.6251 1.6854 30 8 -0.3490 -1.9692 2.2454 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 1.6054 -0.2617 2.1369 39 1 3.1263 -0.6443 1.2951 40 1 3.2748 -3.4792 1.2593 41 1 2.8774 -2.8551 -0.3686 42 1 -0.4750 -6.1767 0.5223 43 1 0.0159 -6.9652 -1.0081 44 1 -1.1708 -8.7523 0.0777 45 1 -0.5716 -8.2772 1.7024 46 1 1.4310 -10.1704 2.2500 47 1 1.1254 -13.1057 3.8048 48 1 2.9763 -9.3474 2.2600 49 1 3.4052 -7.6200 2.2750 50 1 1.7872 -8.1399 2.8044 51 1 -0.5575 -4.3937 1.0714 52 1 0.6625 -4.6640 2.3554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074676055.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:48 Heat of formation + Delta-G solvation = -54.809691 kcal Electronic energy + Delta-G solvation = -30451.066352 eV Core-core repulsion = 26450.757508 eV Total energy + Delta-G solvation = -4000.308845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.17281 -39.80422 -37.72981 -36.80196 -35.86592 -34.28963 -32.49259 -31.39894 -30.75611 -28.98999 -27.95801 -27.45013 -26.64850 -25.26613 -24.08467 -23.20045 -22.07617 -20.86633 -19.84132 -19.40355 -18.69841 -17.77136 -17.37881 -17.06373 -16.15616 -15.91180 -15.53057 -15.13371 -14.96218 -14.67613 -14.52432 -14.09736 -14.01914 -13.81147 -13.50731 -13.32496 -13.21672 -12.89849 -12.75840 -12.56281 -12.49160 -12.30188 -12.16168 -11.88299 -11.85045 -11.76468 -11.48867 -11.36641 -11.26759 -11.24864 -11.05204 -11.00868 -10.86052 -10.52124 -10.29090 -10.12204 -10.00739 -9.77773 -9.57205 -9.00182 -8.93670 -8.50930 -7.07551 -5.86137 -3.16212 2.34905 2.56001 2.65309 3.02584 3.38140 3.43975 3.46286 3.96155 4.08676 4.40457 4.45690 4.51339 4.52392 4.61446 4.71907 4.81012 4.94927 5.05741 5.15234 5.19446 5.20884 5.22645 5.30910 5.35893 5.42783 5.45472 5.48177 5.54084 5.56901 5.58110 5.60529 5.64915 5.74257 5.76392 5.90106 5.97626 6.05471 6.05733 6.16811 6.24971 6.27070 6.49398 6.50629 6.63901 6.77451 6.83655 6.92254 7.62509 7.63868 7.93528 8.16808 8.32232 9.44042 9.98471 10.33109 11.36206 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.002215 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.821889 B =12638.979225 C =12914.478468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.130 3.870 5 N -0.618 5.618 6 C 0.117 3.883 7 C -0.119 4.119 8 H 0.114 0.886 9 C 0.538 3.462 10 O -0.538 6.538 11 N -0.603 5.603 12 C 0.092 3.908 13 C -0.155 4.155 14 C 0.174 3.826 15 H 0.066 0.934 16 N -0.716 5.716 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.127 3.873 26 H 0.072 0.928 27 C -0.159 4.159 28 C -0.146 4.146 29 C 0.522 3.478 30 O -0.527 6.527 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.391 0.609 47 H 0.256 0.744 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.055 0.945 51 H 0.111 0.889 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 23.908 -8.481 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.203 4.203 4 C 0.008 3.992 5 N -0.352 5.352 6 C -0.006 4.006 7 C -0.141 4.141 8 H 0.132 0.868 9 C 0.325 3.675 10 O -0.415 6.415 11 N -0.336 5.336 12 C -0.031 4.031 13 C -0.196 4.196 14 C 0.061 3.939 15 H 0.084 0.916 16 N -0.359 5.359 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.023 3.977 26 H 0.090 0.910 27 C -0.217 4.217 28 C -0.186 4.186 29 C 0.309 3.691 30 O -0.403 6.403 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.229 0.771 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.129 0.871 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.214 24.195 -8.045 25.526 hybrid contribution -0.374 -0.988 -0.028 1.057 sum 0.839 23.207 -8.073 24.586 Atomic orbital electron populations 1.21796 0.94415 1.02101 1.01547 1.21543 0.96971 0.96371 0.98487 1.21775 1.00920 0.95383 1.02209 1.21503 1.00094 0.78929 0.98671 1.48294 1.20249 1.07943 1.58673 1.21983 0.93568 0.85128 0.99889 1.22179 0.96960 0.93391 1.01570 0.86758 1.19591 0.86432 0.83871 0.77596 1.90700 1.16162 1.86805 1.47851 1.48553 1.12376 1.05771 1.66935 1.22524 0.81309 0.99788 0.99519 1.23572 1.00942 0.93283 1.01807 1.21189 0.90209 0.87595 0.94857 0.91584 1.42670 1.68981 1.07697 1.16564 1.19287 1.30065 0.88217 1.00063 0.90976 1.24768 1.01205 0.98407 0.96325 1.69669 1.48756 1.32249 1.07084 0.86105 0.78375 0.84136 0.77440 1.20505 1.21827 1.21837 1.21912 0.97074 0.80685 0.97980 0.90977 1.22003 1.01262 1.03142 0.95263 1.22398 1.00779 0.94718 1.00705 1.20721 0.81130 0.89738 0.77467 1.90735 1.41540 1.65316 1.42699 0.93112 0.92736 0.92354 0.90988 0.92510 0.92330 0.92419 0.89872 0.90195 0.88832 0.89883 0.91055 0.91458 0.90486 0.90616 0.77114 0.93389 0.90058 0.92188 0.92607 0.87070 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.34 37.16 0.31 -0.90 16 2 C -0.11 -0.80 3.13 -90.62 -0.28 -1.09 16 3 C -0.14 -0.81 9.19 37.16 0.34 -0.47 16 4 C 0.13 1.03 5.39 -4.05 -0.02 1.00 16 5 N -0.62 -5.81 2.78 -172.42 -0.48 -6.29 16 6 C 0.12 1.03 6.71 -3.12 -0.02 1.01 16 7 C -0.12 -1.10 2.89 -90.14 -0.26 -1.36 16 8 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 9 C 0.54 6.98 6.89 -10.98 -0.08 6.91 16 10 O -0.54 -8.68 14.42 5.55 0.08 -8.60 16 11 N -0.60 -8.11 3.08 -163.01 -0.50 -8.61 16 12 C 0.09 1.04 6.64 -2.52 -0.02 1.02 16 13 C -0.15 -2.32 6.77 -24.58 -0.17 -2.48 16 14 C 0.17 3.12 3.49 -66.09 -0.23 2.89 16 15 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 16 N -0.72 -16.62 4.93 -51.65 -0.25 -16.88 16 17 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 21 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.13 2.08 3.47 -66.95 -0.23 1.85 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 C -0.16 -2.82 7.94 37.16 0.29 -2.53 16 28 C -0.15 -1.42 5.37 -26.74 -0.14 -1.56 16 29 C 0.52 5.98 6.60 -10.86 -0.07 5.91 16 30 O -0.53 -7.74 16.47 5.56 0.09 -7.65 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.56 6.14 -51.93 -0.32 0.24 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.75 7.92 -51.93 -0.41 0.33 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.97 6.96 -51.93 -0.36 0.61 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.67 5.42 -51.93 -0.28 0.38 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.39 9.66 5.06 -40.82 -0.21 9.46 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.08 1.61 6.77 -51.93 -0.35 1.26 16 49 H 0.06 1.06 6.77 -51.93 -0.35 0.71 16 50 H 0.05 1.01 8.03 -51.93 -0.42 0.60 16 51 H 0.11 0.93 6.78 -51.93 -0.35 0.57 16 52 H 0.11 1.18 7.89 -51.93 -0.41 0.77 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -31.66 401.71 -9.06 -40.71 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.92 Total: 7.76 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.82 Total: 3.28 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.51 Total: -58.11 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.17 Total: -16.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.66 -9.06 -40.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074676055.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.095 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds