Wall clock time and date at job start Tue Mar 31 2020 20:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.53005 * 109.46877 * 119.99936 * 2 1 3 5 5 N 1.46498 * 109.47124 * 64.99898 * 4 2 1 6 6 C 1.46819 * 124.33495 * 270.01395 * 5 4 2 7 7 C 1.54484 * 105.44478 * 163.00122 * 6 5 4 8 8 H 1.09007 * 110.96817 * 267.23413 * 7 6 5 9 9 C 1.50697 * 110.96950 * 143.51154 * 7 6 5 10 10 O 1.21285 * 119.99961 * 3.08499 * 9 7 6 11 11 N 1.34777 * 120.00104 * 183.08701 * 9 7 6 12 12 C 1.47421 * 125.64652 * 359.95874 * 11 9 7 13 13 C 1.55125 * 104.94317 * 204.03571 * 12 11 9 14 14 C 1.55159 * 101.48561 * 323.22116 * 13 12 11 15 15 H 1.09000 * 110.72025 * 276.83053 * 14 13 12 16 16 N 1.46496 * 110.71892 * 153.73007 * 14 13 12 17 17 C 1.36945 * 119.99718 * 88.84511 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47018 * 125.65152 * 179.97438 * 11 9 7 26 26 H 1.08996 * 109.88646 * 298.32912 * 25 11 9 27 27 C 1.53005 * 109.87890 * 59.49129 * 25 11 9 28 28 C 1.54616 * 101.79947 * 25.36846 * 7 6 5 29 29 C 1.34421 * 124.34976 * 89.97243 * 5 4 2 30 30 O 1.21278 * 124.94385 * 0.37710 * 29 5 4 31 31 H 1.09003 * 109.46655 * 300.00432 * 1 2 3 32 32 H 1.09001 * 109.46840 * 59.99829 * 1 2 3 33 33 H 1.08997 * 109.47051 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47367 * 239.99512 * 2 1 3 35 35 H 1.09006 * 109.46828 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47036 * 299.99442 * 3 2 1 37 37 H 1.08997 * 109.46975 * 60.00173 * 3 2 1 38 38 H 1.08994 * 109.47318 * 304.99852 * 4 2 1 39 39 H 1.09001 * 109.46739 * 184.99967 * 4 2 1 40 40 H 1.09003 * 110.28286 * 44.00130 * 6 5 4 41 41 H 1.09000 * 110.23887 * 281.98054 * 6 5 4 42 42 H 1.09004 * 110.37178 * 323.00156 * 12 11 9 43 43 H 1.09004 * 110.37301 * 85.21210 * 12 11 9 44 44 H 1.08998 * 111.16239 * 205.12926 * 13 12 11 45 45 H 1.08997 * 110.93416 * 81.21559 * 13 12 11 46 46 H 0.96996 * 120.00499 * 268.84242 * 16 14 13 47 47 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 48 48 H 1.08998 * 109.46825 * 177.80624 * 27 25 11 49 49 H 1.08997 * 109.47206 * 297.80398 * 27 25 11 50 50 H 1.08999 * 109.47149 * 57.80728 * 27 25 11 51 51 H 1.09009 * 110.48505 * 93.90045 * 28 7 6 52 52 H 1.08997 * 110.49065 * 216.40930 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.3972 -2.6700 1.7306 7 6 0.2262 -4.0569 1.0719 8 1 -0.3718 -3.9862 0.1633 9 6 -0.3802 -5.0417 2.0380 10 8 -0.7135 -4.6776 3.1459 11 7 -0.5523 -6.3271 1.6709 12 6 -0.1944 -6.9019 0.3614 13 6 -1.1073 -8.1467 0.2080 14 6 -1.1512 -8.6791 1.6648 15 1 -0.2767 -9.2942 1.8770 16 7 -2.3838 -9.4337 1.9039 17 6 -2.4247 -10.7779 1.6455 18 1 -1.5484 -11.2815 1.2652 19 6 -3.5925 -11.4931 1.8726 20 7 -4.6607 -10.8791 2.3357 21 14 -3.6485 -13.3266 1.5195 22 1 -4.9990 -13.8521 1.8438 23 1 -3.3565 -13.5632 0.0829 24 1 -2.6343 -14.0221 2.3519 25 6 -1.1283 -7.3881 2.5100 26 1 -0.5113 -7.5359 3.3962 27 6 -2.5529 -7.0104 2.9212 28 6 1.6894 -4.4334 0.7433 29 6 2.3998 -3.1021 0.6350 30 8 3.4852 -2.9338 0.1209 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 1.6054 -0.2618 2.1370 39 1 3.1263 -0.6443 1.2952 40 1 -0.4370 -2.0208 1.4647 41 1 0.4659 -2.7727 2.8135 42 1 -0.3927 -6.1844 -0.4349 43 1 0.8544 -7.1986 0.3511 44 1 -0.6619 -8.8810 -0.4631 45 1 -2.1020 -7.8604 -0.1335 46 1 -3.1710 -8.9813 2.2452 47 1 -5.4769 -11.3789 2.4940 48 1 -2.9872 -7.8182 3.5101 49 1 -2.5291 -6.0983 3.5175 50 1 -3.1570 -6.8456 2.0291 51 1 2.1193 -5.0309 1.5473 52 1 1.7413 -4.9738 -0.2019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074676056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:53 Heat of formation + Delta-G solvation = -54.650207 kcal Electronic energy + Delta-G solvation = -30385.531324 eV Core-core repulsion = 26385.229395 eV Total energy + Delta-G solvation = -4000.301929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.17504 -39.79648 -37.72215 -37.00410 -35.76644 -34.28653 -32.50922 -31.40795 -30.76113 -28.97520 -28.19582 -27.37546 -26.65861 -25.27579 -24.05890 -23.19814 -22.01474 -21.08130 -19.74498 -19.41106 -18.73706 -17.67303 -17.39600 -17.07688 -16.34111 -15.86909 -15.62228 -15.19860 -14.91500 -14.72268 -14.41527 -14.13720 -13.93697 -13.85193 -13.48952 -13.32673 -13.24331 -13.13238 -12.86872 -12.64745 -12.49771 -12.22339 -12.12807 -11.96459 -11.74001 -11.67055 -11.59216 -11.53518 -11.29489 -11.19646 -11.08938 -11.00853 -10.84625 -10.51668 -10.30401 -10.16537 -10.04543 -9.77055 -9.58205 -8.99187 -8.95702 -8.51487 -7.07553 -5.85851 -3.16008 2.31842 2.55469 2.64145 3.01768 3.38920 3.43960 3.44739 3.93942 4.06708 4.38683 4.44491 4.48640 4.51415 4.61874 4.66850 4.81034 4.95829 5.03101 5.11957 5.17172 5.18680 5.25378 5.26698 5.30211 5.38510 5.41492 5.47952 5.48302 5.53029 5.55185 5.57953 5.64551 5.72349 5.74714 5.88034 5.91147 5.96832 6.05687 6.16247 6.24667 6.25380 6.49078 6.50676 6.63422 6.76572 6.81047 6.92141 7.61795 7.63209 7.90021 8.16314 8.32631 9.44260 9.98661 10.33370 11.36369 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.002206 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.111406 B =12692.370437 C =13066.913486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.130 3.870 5 N -0.616 5.616 6 C 0.113 3.887 7 C -0.120 4.120 8 H 0.115 0.885 9 C 0.539 3.461 10 O -0.538 6.538 11 N -0.603 5.603 12 C 0.095 3.905 13 C -0.154 4.154 14 C 0.173 3.827 15 H 0.065 0.935 16 N -0.717 5.717 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.291 1.291 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.128 3.872 26 H 0.072 0.928 27 C -0.159 4.159 28 C -0.144 4.144 29 C 0.521 3.479 30 O -0.531 6.531 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.391 0.609 47 H 0.257 0.743 48 H 0.080 0.920 49 H 0.060 0.940 50 H 0.055 0.945 51 H 0.109 0.891 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.120 21.203 -4.690 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 C -0.203 4.203 4 C 0.009 3.991 5 N -0.350 5.350 6 C -0.010 4.010 7 C -0.142 4.142 8 H 0.133 0.867 9 C 0.326 3.674 10 O -0.415 6.415 11 N -0.336 5.336 12 C -0.029 4.029 13 C -0.195 4.195 14 C 0.061 3.939 15 H 0.082 0.918 16 N -0.360 5.360 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.212 1.212 25 C 0.024 3.976 26 H 0.091 0.909 27 C -0.217 4.217 28 C -0.184 4.184 29 C 0.309 3.691 30 O -0.408 6.408 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.229 0.771 47 H 0.067 0.933 48 H 0.099 0.901 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.127 0.873 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.529 21.432 -4.338 24.719 hybrid contribution -0.483 -0.937 -0.272 1.089 sum 11.046 20.494 -4.610 23.734 Atomic orbital electron populations 1.21959 0.94858 1.02071 1.01926 1.21550 0.96479 0.96500 0.98919 1.21769 1.01180 0.95237 1.02081 1.21491 1.00856 0.78778 0.98018 1.48308 1.20634 1.07752 1.58301 1.22136 0.86330 0.92602 0.99912 1.22183 0.97110 0.94818 1.00058 0.86656 1.19571 0.78894 0.81426 0.87556 1.90702 1.51379 1.77604 1.21829 1.48550 1.60780 1.07972 1.16319 1.22498 0.99445 0.96484 0.84429 1.23602 0.99326 0.95168 1.01440 1.21183 0.92091 0.89744 0.90858 0.91756 1.42662 1.09140 1.06298 1.77887 1.19190 0.97028 0.84575 1.36911 0.91092 1.24761 0.96011 0.98202 1.01676 1.69647 1.02098 1.35331 1.50767 0.86247 0.76690 0.85107 0.77976 1.21688 1.21211 1.21197 1.21891 0.95047 0.87013 0.93608 0.90945 1.22004 0.95424 1.02264 1.01975 1.22358 0.93504 0.96814 1.05740 1.20768 0.84739 0.86683 0.76939 1.90728 1.20324 1.84833 1.44922 0.92511 0.92587 0.92232 0.90776 0.92451 0.92313 0.92461 0.90141 0.89917 0.89353 0.88915 0.91294 0.91371 0.90456 0.90655 0.77098 0.93297 0.90109 0.92128 0.92556 0.87288 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.58 37.16 0.32 -0.65 16 2 C -0.11 -0.81 3.13 -90.61 -0.28 -1.10 16 3 C -0.14 -0.83 9.19 37.16 0.34 -0.49 16 4 C 0.13 1.02 5.35 -4.04 -0.02 1.00 16 5 N -0.62 -5.72 2.71 -172.36 -0.47 -6.19 16 6 C 0.11 1.00 6.12 -3.09 -0.02 0.98 16 7 C -0.12 -1.10 2.78 -90.14 -0.25 -1.35 16 8 H 0.12 0.87 7.86 -51.92 -0.41 0.47 16 9 C 0.54 6.97 6.90 -10.99 -0.08 6.89 16 10 O -0.54 -8.66 14.44 5.55 0.08 -8.58 16 11 N -0.60 -8.08 3.08 -162.88 -0.50 -8.58 16 12 C 0.09 1.07 5.69 -2.41 -0.01 1.06 16 13 C -0.15 -2.30 6.79 -24.46 -0.17 -2.47 16 14 C 0.17 3.11 3.46 -66.10 -0.23 2.89 16 15 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 16 N -0.72 -16.61 4.98 -51.65 -0.26 -16.87 16 17 C -0.25 -6.41 9.97 -15.06 -0.15 -6.56 16 18 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 21 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.13 2.09 3.48 -66.95 -0.23 1.86 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 C -0.16 -2.79 7.94 37.16 0.29 -2.50 16 28 C -0.14 -1.31 5.56 -26.75 -0.15 -1.46 16 29 C 0.52 5.88 8.02 -10.86 -0.09 5.79 16 30 O -0.53 -7.88 17.59 5.56 0.10 -7.78 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.41 5.65 -51.93 -0.29 0.12 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 40 H 0.09 0.66 5.90 -51.93 -0.31 0.36 16 41 H 0.09 0.95 7.01 -51.93 -0.36 0.59 16 42 H 0.07 0.63 7.48 -51.93 -0.39 0.24 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.39 9.62 4.99 -40.82 -0.20 9.42 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.08 1.58 6.72 -51.93 -0.35 1.23 16 49 H 0.06 1.06 6.76 -51.93 -0.35 0.71 16 50 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 51 H 0.11 1.04 7.89 -51.92 -0.41 0.63 16 52 H 0.11 0.86 7.87 -51.93 -0.41 0.45 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -31.75 403.10 -9.02 -40.77 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -8.93 Total: 7.37 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.82 Total: 3.51 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.50 Total: -57.88 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.18 Total: -16.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.75 -9.02 -40.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074676056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.876 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds