Wall clock time and date at job start Tue Mar 31 2020 20:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.67263 * 2 1 4 4 C 1.53070 * 109.67768 * 120.50064 * 2 1 3 5 5 C 1.50172 * 109.89135 * 168.63546 * 4 2 1 6 6 O 1.21282 * 118.24350 * 162.43968 * 5 4 2 7 7 N 1.33347 * 123.51433 * 342.41678 * 5 4 2 8 8 C 1.45764 * 124.10245 * 2.24274 * 7 5 4 9 9 H 1.08995 * 109.29764 * 101.01152 * 8 7 5 10 10 C 1.50696 * 109.30025 * 220.59511 * 8 7 5 11 11 O 1.21283 * 120.00312 * 20.00048 * 10 8 7 12 12 N 1.34779 * 120.00158 * 200.00189 * 10 8 7 13 13 C 1.45333 * 120.36131 * 0.02562 * 12 10 8 14 14 C 1.53445 * 108.41511 * 136.65945 * 13 12 10 15 15 C 1.52884 * 109.38350 * 282.27537 * 14 13 12 16 16 C 1.53951 * 109.72576 * 72.89531 * 15 14 13 17 17 C 1.52453 * 110.73331 * 44.36754 * 16 15 14 18 18 C 1.53797 * 109.40187 * 246.26837 * 17 16 15 19 19 H 1.09000 * 109.52422 * 317.92897 * 18 17 16 20 20 N 1.46499 * 109.52416 * 197.80432 * 18 17 16 21 21 C 1.36940 * 120.00320 * 84.99665 * 20 18 17 22 22 H 1.07998 * 119.99414 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99865 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00293 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99595 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47649 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47071 * 120.00422 * 25 23 21 28 28 H 1.48507 * 109.47223 * 239.99815 * 25 23 21 29 29 C 1.46959 * 120.36702 * 179.72327 * 12 10 8 30 30 C 1.52933 * 110.48105 * 340.89220 * 8 7 5 31 31 H 1.09002 * 109.47153 * 299.50038 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.50229 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.50210 * 1 2 3 34 34 H 1.09002 * 109.39495 * 288.76055 * 4 2 1 35 35 H 1.09001 * 109.39836 * 48.50132 * 4 2 1 36 36 H 0.96998 * 117.95169 * 182.22704 * 7 5 4 37 37 H 1.09001 * 109.67783 * 256.38875 * 13 12 10 38 38 H 1.08997 * 109.68078 * 16.88996 * 13 12 10 39 39 H 1.08994 * 109.48382 * 42.25123 * 14 13 12 40 40 H 1.08998 * 109.48316 * 162.30529 * 14 13 12 41 41 H 1.08997 * 109.42403 * 192.97132 * 15 14 13 42 42 H 1.08997 * 109.42652 * 312.87166 * 15 14 13 43 43 H 1.09011 * 109.22331 * 164.68431 * 16 15 14 44 44 H 1.08990 * 109.23361 * 284.08182 * 16 15 14 45 45 H 1.08999 * 109.48068 * 6.25009 * 17 16 15 46 46 H 1.09003 * 109.47912 * 126.27469 * 17 16 15 47 47 H 0.97006 * 119.99738 * 264.99982 * 20 18 17 48 48 H 0.96999 * 119.99932 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.53336 * 51.53041 * 29 12 10 50 50 H 1.09004 * 109.52882 * 171.75014 * 29 12 10 51 51 H 1.08999 * 109.61831 * 291.02824 * 30 8 7 52 52 H 1.08991 * 109.60057 * 170.52666 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0454 -0.7315 1.2419 5 6 3.5210 -0.9789 1.1135 6 8 4.1474 -1.2472 2.1168 7 7 4.1795 -0.9197 -0.0446 8 6 3.5644 -0.5637 -1.3172 9 1 3.7970 0.4750 -1.5517 10 6 4.1131 -1.4543 -2.4020 11 8 4.6378 -2.5089 -2.1133 12 7 4.0208 -1.0788 -3.6931 13 6 3.3942 0.1836 -4.0480 14 6 4.2534 0.8667 -5.1202 15 6 5.4740 1.5080 -4.4597 16 6 6.4683 0.4133 -4.0318 17 6 6.6373 -0.6240 -5.1361 18 6 6.0727 -1.9732 -4.6606 19 1 6.3681 -2.1473 -3.6259 20 7 6.5960 -3.0485 -5.5067 21 6 7.8136 -3.6091 -5.2266 22 1 8.3879 -3.2587 -4.3818 23 6 8.3097 -4.6277 -6.0287 24 7 7.6100 -5.0543 -7.0586 25 14 9.9703 -5.3928 -5.6462 26 1 10.5510 -4.7409 -4.4450 27 1 9.7983 -6.8448 -5.3864 28 1 10.8817 -5.2016 -6.8030 29 6 4.5586 -1.9381 -4.7570 30 6 2.0463 -0.7336 -1.2438 31 1 -0.3633 0.5061 0.8944 32 1 -0.3633 -1.0277 -0.0089 33 1 -0.3634 0.5216 -0.8855 34 1 1.8559 -0.1222 2.1256 35 1 1.5258 -1.6845 1.3424 36 1 5.1272 -1.1262 -0.0398 37 1 2.3945 -0.0007 -4.4414 38 1 3.3298 0.8220 -3.1669 39 1 4.5816 0.1261 -5.8494 40 1 3.6655 1.6355 -5.6218 41 1 5.9578 2.1806 -5.1679 42 1 5.1570 2.0719 -3.5824 43 1 7.4346 0.8701 -3.8175 44 1 6.0964 -0.0779 -3.1327 45 1 6.0992 -0.2981 -6.0263 46 1 7.6958 -0.7352 -5.3715 47 1 6.0800 -3.3635 -6.2653 48 1 7.9569 -5.7658 -7.6193 49 1 4.1696 -2.9496 -4.6401 50 1 4.2631 -1.5429 -5.7290 51 1 1.7996 -1.7928 -1.1722 52 1 1.5872 -0.3082 -2.1361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088315871.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:01 Heat of formation + Delta-G solvation = -59.893116 kcal Electronic energy + Delta-G solvation = -31724.067406 eV Core-core repulsion = 27723.538127 eV Total energy + Delta-G solvation = -4000.529278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.24371 -39.90042 -37.76526 -36.84774 -35.10080 -34.27965 -33.94153 -32.16282 -30.43807 -29.68889 -28.31875 -27.60198 -26.23232 -24.97456 -23.52790 -22.83255 -21.80535 -20.91525 -19.92680 -19.53226 -19.00917 -17.48626 -17.31608 -17.19794 -16.60737 -16.01633 -15.56942 -15.37625 -14.84013 -14.63327 -14.53338 -14.42032 -13.90225 -13.73871 -13.70222 -13.62103 -13.24647 -13.09359 -12.90964 -12.62531 -12.52490 -12.39823 -12.11011 -11.86377 -11.69373 -11.40156 -11.28237 -11.20751 -11.15776 -10.95411 -10.80516 -10.74038 -10.59134 -10.24518 -10.18659 -10.06381 -9.93215 -9.78225 -9.62226 -9.12348 -8.85973 -8.39872 -6.93138 -5.73834 -3.02044 2.43976 2.50249 2.85914 3.22075 3.46493 3.53076 3.54999 4.08621 4.17794 4.22295 4.31991 4.43338 4.61375 4.64894 4.74438 4.85800 4.98090 5.00129 5.10866 5.17510 5.20825 5.24402 5.25320 5.34702 5.35985 5.41408 5.50052 5.55066 5.60412 5.69014 5.70367 5.79023 5.80875 5.84214 5.87921 5.96478 5.98129 6.13088 6.28706 6.39900 6.46223 6.57918 6.64267 6.70622 6.97441 7.14077 7.14841 7.45106 7.76421 8.04140 8.19095 8.44957 9.56048 10.11313 10.46086 11.48990 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003385 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.701398 B = 8269.452794 C = 9284.453653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.524 3.476 6 O -0.556 6.556 7 N -0.699 5.699 8 C 0.124 3.876 9 H 0.098 0.902 10 C 0.497 3.503 11 O -0.510 6.510 12 N -0.595 5.595 13 C 0.103 3.897 14 C -0.152 4.152 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.142 4.142 18 C 0.163 3.837 19 H 0.061 0.939 20 N -0.720 5.720 21 C -0.230 4.230 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.112 3.888 30 C -0.124 4.124 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.407 0.593 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.382 0.618 48 H 0.254 0.746 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.651 18.030 8.594 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.311 3.689 6 O -0.434 6.434 7 N -0.351 5.351 8 C 0.014 3.986 9 H 0.115 0.885 10 C 0.282 3.718 11 O -0.384 6.384 12 N -0.330 5.330 13 C -0.020 4.020 14 C -0.189 4.189 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.182 4.182 18 C 0.053 3.947 19 H 0.079 0.921 20 N -0.360 5.360 21 C -0.361 4.361 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 C -0.010 4.010 30 C -0.162 4.162 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.244 0.756 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.215 0.785 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.099 0.901 51 H 0.101 0.899 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.116 17.282 9.356 26.061 hybrid contribution 1.185 -0.549 -0.393 1.364 sum -15.931 16.733 8.964 24.782 Atomic orbital electron populations 1.21810 0.93663 1.02510 1.02362 1.21264 0.96853 0.99747 0.93340 0.89955 1.21769 0.91823 1.03502 1.00078 1.20117 0.90335 0.76010 0.82467 1.90778 1.68358 1.49085 1.35160 1.45264 1.13897 1.69925 1.06047 1.20961 0.94947 0.98810 0.83833 0.88470 1.20561 0.80473 0.87333 0.83445 1.90838 1.42524 1.23260 1.81775 1.47758 1.58375 1.20907 1.05918 1.21735 0.96131 0.84974 0.99196 1.22351 0.96883 1.00970 0.98739 1.21728 0.95936 0.97732 0.99765 1.21705 0.98037 0.96337 0.99557 1.22542 1.02416 0.96126 0.97146 1.20559 0.89985 0.88069 0.96135 0.92073 1.42277 1.21201 1.39812 1.32741 1.19244 0.94557 1.13040 1.09253 0.91229 1.24708 0.98799 0.99469 0.97997 1.69663 1.38266 1.31586 1.18813 0.86137 0.83833 0.79078 0.77311 1.20561 1.21879 1.21955 1.21816 0.95949 0.94240 0.89029 1.21977 0.91481 1.03043 0.99733 0.92066 0.92177 0.91985 0.87976 0.87973 0.75639 0.91557 0.90212 0.88976 0.91138 0.92159 0.92684 0.93110 0.92701 0.92424 0.91669 0.78491 0.93650 0.90663 0.90070 0.89940 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.20 37.16 0.34 -0.27 16 2 C -0.09 -0.53 2.80 -90.40 -0.25 -0.78 16 3 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 4 C -0.13 -1.05 5.35 -28.10 -0.15 -1.21 16 5 C 0.52 6.52 7.71 -11.88 -0.09 6.43 16 6 O -0.56 -9.36 17.78 5.56 0.10 -9.26 16 7 N -0.70 -8.37 4.79 -55.98 -0.27 -8.63 16 8 C 0.12 1.18 2.66 -69.52 -0.18 1.00 16 9 H 0.10 0.71 6.38 -51.93 -0.33 0.37 16 10 C 0.50 6.73 5.32 -10.99 -0.06 6.67 16 11 O -0.51 -9.67 15.12 5.56 0.08 -9.58 16 12 N -0.60 -7.16 1.70 -174.72 -0.30 -7.46 16 13 C 0.10 0.81 5.04 -4.44 -0.02 0.79 16 14 C -0.15 -1.32 5.45 -26.56 -0.14 -1.46 16 15 C -0.11 -1.11 5.75 -26.29 -0.15 -1.26 16 16 C -0.12 -1.59 5.40 -26.52 -0.14 -1.73 16 17 C -0.14 -2.40 5.09 -26.60 -0.14 -2.53 16 18 C 0.16 3.21 2.38 -68.15 -0.16 3.04 16 19 H 0.06 1.38 6.13 -51.93 -0.32 1.06 16 20 N -0.72 -17.96 5.13 -53.64 -0.28 -18.23 16 21 C -0.23 -6.50 9.88 -15.06 -0.15 -6.64 16 22 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 25 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 C 0.11 1.76 4.60 -4.43 -0.02 1.74 16 30 C -0.12 -0.87 4.43 -26.58 -0.12 -0.99 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.41 5.55 8.44 -40.82 -0.34 5.21 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.46 5.11 -51.93 -0.27 0.20 16 39 H 0.09 1.00 3.35 -51.93 -0.17 0.83 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 43 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 44 H 0.05 0.78 5.37 -51.93 -0.28 0.50 16 45 H 0.06 0.90 5.47 -51.93 -0.28 0.61 16 46 H 0.06 1.30 8.09 -51.93 -0.42 0.88 16 47 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 48 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 50 H 0.08 1.12 6.06 -51.93 -0.31 0.81 16 51 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 52 H 0.09 0.46 7.20 -51.93 -0.37 0.08 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -35.58 385.99 -9.12 -44.71 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.44 Total: 9.99 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.54 Total: 2.28 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.12 Total: -61.95 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.58 -9.12 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088315871.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.188 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds