Wall clock time and date at job start Tue Mar 31 2020 20:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.67277 * 2 1 4 4 C 1.53072 * 109.67122 * 120.49643 * 2 1 3 5 5 C 1.50177 * 109.89130 * 168.67056 * 4 2 1 6 6 O 1.21286 * 118.24506 * 162.43739 * 5 4 2 7 7 N 1.33356 * 123.50939 * 342.41913 * 5 4 2 8 8 C 1.45749 * 124.10579 * 2.21798 * 7 5 4 9 9 H 1.09003 * 109.29994 * 101.03212 * 8 7 5 10 10 C 1.50695 * 109.30312 * 220.61408 * 8 7 5 11 11 O 1.21283 * 119.99839 * 20.42035 * 10 8 7 12 12 N 1.35439 * 120.00252 * 200.41779 * 10 8 7 13 13 C 1.45412 * 119.95471 * 359.97438 * 12 10 8 14 14 C 1.52257 * 114.46189 * 76.01889 * 13 12 10 15 15 C 1.52517 * 112.54135 * 21.14971 * 14 13 12 16 16 C 1.52611 * 111.02053 * 80.56925 * 15 14 13 17 17 C 1.51624 * 111.87924 * 303.12767 * 16 15 14 18 18 C 1.52579 * 112.22608 * 294.43446 * 17 16 15 19 19 H 1.10838 * 107.66469 * 225.72112 * 18 17 16 20 20 N 1.45909 * 112.38709 * 343.65058 * 18 17 16 21 21 C 1.36938 * 120.00627 * 279.38829 * 20 18 17 22 22 H 1.08006 * 119.99429 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00496 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00194 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46895 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47415 * 119.99770 * 25 23 21 28 28 H 1.48502 * 109.47228 * 239.99729 * 25 23 21 29 29 C 1.46812 * 119.38621 * 183.67990 * 12 10 8 30 30 C 1.52928 * 110.32357 * 340.82767 * 8 7 5 31 31 H 1.08999 * 109.47791 * 299.50422 * 1 2 3 32 32 H 1.09010 * 109.47178 * 59.50550 * 1 2 3 33 33 H 1.09000 * 109.47089 * 179.50030 * 1 2 3 34 34 H 1.09001 * 109.40223 * 48.53831 * 4 2 1 35 35 H 1.08997 * 109.33094 * 288.75748 * 4 2 1 36 36 H 0.96995 * 117.94585 * 182.24724 * 7 5 4 37 37 H 1.10304 * 107.92763 * 315.27445 * 13 12 10 38 38 H 1.09419 * 109.50364 * 199.94522 * 13 12 10 39 39 H 1.09842 * 109.26729 * 142.55045 * 14 13 12 40 40 H 1.09816 * 109.34162 * 259.63591 * 14 13 12 41 41 H 1.10529 * 108.04470 * 198.57328 * 15 14 13 42 42 H 1.08111 * 111.88801 * 315.76364 * 15 14 13 43 43 H 1.09063 * 109.97364 * 179.90578 * 16 15 14 44 44 H 1.10005 * 108.45528 * 62.97206 * 16 15 14 45 45 H 1.10222 * 108.44060 * 174.56944 * 17 16 15 46 46 H 1.08985 * 110.23097 * 57.90641 * 17 16 15 47 47 H 0.97002 * 119.99605 * 99.38026 * 20 18 17 48 48 H 0.97005 * 119.99967 * 180.02562 * 24 23 21 49 49 H 1.09628 * 109.19406 * 13.90486 * 29 12 10 50 50 H 1.09553 * 109.33931 * 132.03820 * 29 12 10 51 51 H 1.09000 * 109.60218 * 170.61186 * 30 8 7 52 52 H 1.08994 * 109.59996 * 291.09553 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0452 -0.7315 1.2420 5 6 3.5211 -0.9782 1.1142 6 8 4.1472 -1.2463 2.1177 7 7 4.1799 -0.9184 -0.0438 8 6 3.5650 -0.5631 -1.3165 9 1 3.7972 0.4757 -1.5512 10 6 4.1145 -1.4535 -2.4010 11 8 4.6329 -2.5113 -2.1125 12 7 4.0295 -1.0725 -3.6979 13 6 3.4073 0.1957 -4.0428 14 6 4.2719 1.4181 -3.7662 15 6 5.7557 1.0767 -3.6775 16 6 6.3720 0.9482 -5.0677 17 6 5.6545 -0.0883 -5.9102 18 6 5.8142 -1.4985 -5.3500 19 1 6.0654 -2.1698 -6.1955 20 7 6.9032 -1.5925 -4.3835 21 6 8.1966 -1.7074 -4.8181 22 1 8.4107 -1.7288 -5.8766 23 6 9.2325 -1.7973 -3.8986 24 7 8.9716 -1.7717 -2.6088 25 14 10.9969 -1.9547 -4.4916 26 1 11.0213 -1.9604 -5.9764 27 1 11.7929 -0.8070 -3.9874 28 1 11.5790 -3.2225 -3.9825 29 6 4.4953 -1.9856 -4.7490 30 6 2.0476 -0.7369 -1.2402 31 1 -0.3635 0.5061 0.8944 32 1 -0.3634 0.5215 -0.8856 33 1 -0.3633 -1.0276 -0.0090 34 1 1.5261 -1.6847 1.3422 35 1 1.8553 -0.1212 2.1249 36 1 5.1276 -1.1248 -0.0387 37 1 2.4771 0.2879 -3.4572 38 1 3.1078 0.1814 -5.0952 39 1 4.1197 2.1577 -4.5639 40 1 3.9520 1.8844 -2.8249 41 1 6.2674 1.9064 -3.1565 42 1 5.9299 0.1861 -3.0899 43 1 7.4321 0.7058 -4.9843 44 1 6.2999 1.9232 -5.5720 45 1 6.0789 -0.0654 -6.9272 46 1 4.5988 0.1662 -6.0025 47 1 6.7108 -1.5735 -3.4329 48 1 9.6955 -1.8342 -1.9661 49 1 4.6340 -2.9857 -4.3221 50 1 3.7346 -2.0526 -5.5346 51 1 1.5857 -0.3139 -2.1323 52 1 1.8042 -1.7969 -1.1671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088315872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:06 Heat of formation + Delta-G solvation = -64.012880 kcal Electronic energy + Delta-G solvation = -32598.626189 eV Core-core repulsion = 28597.918264 eV Total energy + Delta-G solvation = -4000.707925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.99684 -39.56571 -37.49695 -36.69337 -34.85035 -34.12078 -33.49930 -32.15013 -30.10201 -29.20902 -28.14905 -27.65415 -26.61169 -25.00867 -23.53258 -22.40971 -21.65135 -20.62181 -19.68381 -19.31803 -18.35550 -17.31832 -17.30089 -16.80283 -16.42202 -15.67321 -15.41669 -15.04114 -14.83593 -14.58682 -14.47309 -14.30162 -13.77445 -13.66892 -13.54251 -13.38112 -13.26825 -12.92747 -12.55018 -12.45108 -12.36288 -12.00116 -11.78490 -11.60584 -11.54178 -11.40386 -11.23022 -11.09525 -11.06272 -10.81644 -10.77405 -10.62535 -10.14777 -10.01162 -9.91508 -9.88394 -9.64610 -9.53845 -9.42515 -8.91992 -8.79959 -8.31115 -6.85608 -5.69320 -2.97751 2.66518 2.70597 3.08780 3.45489 3.46972 3.51282 3.54121 4.25187 4.33619 4.36771 4.51885 4.61494 4.65853 4.80409 4.97245 5.13545 5.16124 5.19049 5.24543 5.31534 5.38458 5.40529 5.41940 5.49936 5.54369 5.57037 5.63034 5.66566 5.76754 5.79827 5.82494 5.87921 5.96274 6.03095 6.08041 6.13245 6.31092 6.41798 6.56759 6.58572 6.68125 6.85688 6.90465 7.00588 7.12834 7.32505 7.40620 7.59382 7.76521 8.28218 8.40591 8.49428 9.60370 10.21577 10.55335 11.52318 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.004203 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.691411 B = 6660.446092 C = 7839.050872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.083 0.917 4 C -0.131 4.131 5 C 0.522 3.478 6 O -0.557 6.557 7 N -0.696 5.696 8 C 0.123 3.877 9 H 0.101 0.899 10 C 0.502 3.498 11 O -0.506 6.506 12 N -0.592 5.592 13 C 0.108 3.892 14 C -0.136 4.136 15 C -0.107 4.107 16 C -0.092 4.092 17 C -0.132 4.132 18 C 0.164 3.836 19 H 0.043 0.957 20 N -0.710 5.710 21 C -0.237 4.237 22 H 0.068 0.932 23 C -0.010 4.010 24 N -0.924 5.924 25 Si 0.900 3.100 26 H -0.282 1.282 27 H -0.293 1.293 28 H -0.293 1.293 29 C 0.107 3.893 30 C -0.125 4.125 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.411 0.589 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.026 0.974 45 H 0.038 0.962 46 H 0.047 0.953 47 H 0.388 0.612 48 H 0.253 0.747 49 H 0.090 0.910 50 H 0.066 0.934 51 H 0.092 0.908 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.112 8.148 -1.283 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.101 0.899 4 C -0.171 4.171 5 C 0.308 3.692 6 O -0.435 6.435 7 N -0.349 5.349 8 C 0.013 3.987 9 H 0.118 0.882 10 C 0.288 3.712 11 O -0.380 6.380 12 N -0.326 5.326 13 C -0.015 4.015 14 C -0.174 4.174 15 C -0.145 4.145 16 C -0.129 4.129 17 C -0.173 4.173 18 C 0.052 3.948 19 H 0.060 0.940 20 N -0.351 5.351 21 C -0.368 4.368 22 H 0.086 0.914 23 C -0.206 4.206 24 N -0.572 5.572 25 Si 0.732 3.268 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.220 1.220 29 C -0.016 4.016 30 C -0.163 4.163 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.249 0.751 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.223 0.777 48 H 0.063 0.937 49 H 0.109 0.891 50 H 0.084 0.916 51 H 0.110 0.890 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.560 7.448 -0.701 21.879 hybrid contribution 1.439 0.059 -0.310 1.473 sum -19.121 7.506 -1.012 20.567 Atomic orbital electron populations 1.21805 0.93807 1.02356 1.02276 1.21254 0.96658 0.99875 0.93472 0.89898 1.21763 0.92086 1.03286 0.99979 1.20077 0.90204 0.76279 0.82611 1.90774 1.68368 1.49256 1.35128 1.45290 1.14225 1.69502 1.05891 1.20990 0.94373 0.99427 0.83863 0.88165 1.20747 0.79746 0.87117 0.83613 1.90817 1.42035 1.23520 1.81578 1.47567 1.61024 1.18448 1.05574 1.21432 0.94490 0.83741 1.01883 1.21987 0.97222 0.96753 1.01473 1.21277 0.92280 1.02278 0.98645 1.20972 1.02322 0.95751 0.93872 1.22115 0.98620 0.98096 0.98427 1.20509 0.87769 0.93647 0.92834 0.93958 1.42174 1.01169 1.87151 1.04650 1.19196 0.83392 1.42279 0.91933 0.91403 1.24700 0.97591 1.03077 0.95260 1.69684 1.30834 1.57061 0.99636 0.86223 0.85800 0.77214 0.77561 1.20713 1.22062 1.22010 1.22193 0.95929 0.94220 0.89213 1.21992 0.91962 1.02699 0.99601 0.92108 0.92084 0.92276 0.88150 0.88113 0.75062 0.92218 0.89968 0.91357 0.92626 0.94061 0.90184 0.89698 0.95496 0.94276 0.93489 0.77702 0.93652 0.89143 0.91556 0.88993 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.20 37.16 0.34 -0.43 16 2 C -0.09 -0.69 2.80 -90.45 -0.25 -0.94 16 3 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 4 C -0.13 -1.28 5.35 -28.10 -0.15 -1.43 16 5 C 0.52 7.76 7.71 -11.87 -0.09 7.67 16 6 O -0.56 -10.78 17.78 5.55 0.10 -10.68 16 7 N -0.70 -10.50 4.79 -55.99 -0.27 -10.77 16 8 C 0.12 1.51 2.70 -69.53 -0.19 1.32 16 9 H 0.10 1.11 5.43 -51.93 -0.28 0.83 16 10 C 0.50 7.92 5.28 -10.69 -0.06 7.87 16 11 O -0.51 -10.57 15.42 5.56 0.09 -10.49 16 12 N -0.59 -8.11 1.70 -173.34 -0.30 -8.41 16 13 C 0.11 1.08 4.32 -5.01 -0.02 1.06 16 14 C -0.14 -1.49 4.69 -27.36 -0.13 -1.61 16 15 C -0.11 -1.71 5.03 -27.18 -0.14 -1.85 16 16 C -0.09 -1.58 4.87 -27.63 -0.13 -1.71 16 17 C -0.13 -2.10 5.00 -27.64 -0.14 -2.24 16 18 C 0.16 3.04 2.66 -68.51 -0.18 2.86 16 19 H 0.04 0.82 8.17 -50.87 -0.42 0.40 16 20 N -0.71 -16.95 3.54 -53.39 -0.19 -17.14 16 21 C -0.24 -6.38 8.66 -15.06 -0.13 -6.51 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -28.08 13.06 55.49 0.72 -27.35 16 25 Si 0.90 22.56 29.55 -169.99 -5.02 17.53 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 29 C 0.11 1.66 5.31 -3.92 -0.02 1.64 16 30 C -0.12 -1.09 4.39 -26.63 -0.12 -1.20 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.41 7.41 8.45 -40.82 -0.34 7.06 16 37 H 0.06 0.43 5.24 -51.18 -0.27 0.17 16 38 H 0.08 0.72 6.46 -51.69 -0.33 0.38 16 39 H 0.07 0.67 8.09 -51.45 -0.42 0.25 16 40 H 0.06 0.52 6.95 -51.47 -0.36 0.16 16 41 H 0.04 0.67 8.27 -51.05 -0.42 0.25 16 42 H 0.08 1.56 4.35 -52.43 -0.23 1.33 16 43 H 0.08 1.85 6.61 -51.89 -0.34 1.51 16 44 H 0.03 0.41 8.23 -51.36 -0.42 -0.01 16 45 H 0.04 0.62 8.24 -51.23 -0.42 0.20 16 46 H 0.05 0.61 4.84 -51.94 -0.25 0.35 16 47 H 0.39 10.15 5.81 -40.82 -0.24 9.91 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.09 1.65 7.05 -51.57 -0.36 1.29 16 50 H 0.07 0.80 8.17 -51.62 -0.42 0.38 16 51 H 0.09 0.59 5.91 -51.93 -0.31 0.29 16 52 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -34.61 379.92 -8.98 -43.59 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -8.34 Total: 13.89 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.50 Total: 4.11 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.03 Total: -63.68 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.18 Total: -21.17 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.61 -8.98 -43.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088315872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.422 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds