Wall clock time and date at job start Tue Mar 31 2020 20:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47236 * 120.00477 * 2 1 3 5 5 N 1.46505 * 109.47212 * 64.99775 * 4 2 1 6 6 C 1.46760 * 124.34797 * 269.72831 * 5 4 2 7 7 C 1.54661 * 105.37765 * 162.85705 * 6 5 4 8 8 H 1.09006 * 111.18839 * 267.58625 * 7 6 5 9 9 C 1.50705 * 110.85274 * 143.78932 * 7 6 5 10 10 O 1.21278 * 119.99803 * 6.32692 * 9 7 6 11 11 N 1.34774 * 119.99725 * 186.32336 * 9 7 6 12 12 C 1.46498 * 119.99741 * 179.97438 * 11 9 7 13 13 H 1.09001 * 110.64814 * 328.14866 * 12 11 9 14 14 C 1.55160 * 110.72006 * 91.48268 * 12 11 9 15 15 C 1.54903 * 101.58251 * 153.86568 * 14 12 11 16 16 N 1.47429 * 104.83253 * 322.98876 * 15 14 12 17 17 C 1.36943 * 125.64686 * 204.16261 * 16 15 14 18 18 H 1.07996 * 119.99440 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00145 * 359.96493 * 17 16 15 20 20 N 1.31619 * 119.99799 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99914 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46877 * 89.99776 * 21 19 17 23 23 H 1.48491 * 109.47018 * 209.99524 * 21 19 17 24 24 H 1.48503 * 109.46701 * 329.99804 * 21 19 17 25 25 C 1.47015 * 108.70259 * 24.13142 * 16 15 14 26 26 H 1.09001 * 109.88541 * 239.52078 * 25 16 15 27 27 C 1.53002 * 109.88424 * 118.35486 * 25 16 15 28 28 C 1.54622 * 101.68924 * 25.76060 * 7 6 5 29 29 C 1.34421 * 124.34606 * 90.02582 * 5 4 2 30 30 O 1.21282 * 124.94409 * 0.42503 * 29 5 4 31 31 H 1.09004 * 109.46741 * 299.99412 * 1 2 3 32 32 H 1.09000 * 109.47403 * 59.99547 * 1 2 3 33 33 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46741 * 240.00588 * 2 1 3 35 35 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47400 * 300.00455 * 3 2 1 37 37 H 1.09004 * 109.46881 * 60.00674 * 3 2 1 38 38 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 39 39 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 40 40 H 1.09001 * 110.24370 * 281.97611 * 6 5 4 41 41 H 1.08993 * 110.24973 * 43.98495 * 6 5 4 42 42 H 0.96996 * 120.00498 * 0.02562 * 11 9 7 43 43 H 1.09002 * 111.00489 * 271.93944 * 14 12 11 44 44 H 1.09002 * 111.00255 * 35.78754 * 14 12 11 45 45 H 1.09003 * 110.36669 * 204.15574 * 15 14 12 46 46 H 1.09000 * 110.36973 * 81.83218 * 15 14 12 47 47 H 0.97006 * 119.99810 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.47332 * 302.19350 * 27 25 16 49 49 H 1.09006 * 109.46794 * 62.19057 * 27 25 16 50 50 H 1.08999 * 109.47401 * 182.18859 * 27 25 16 51 51 H 1.09003 * 110.48881 * 216.30551 * 28 7 6 52 52 H 1.09008 * 110.59850 * 93.72199 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 -2.1330 1.1904 6 6 0.4006 -2.6713 1.7354 7 6 0.2265 -4.0570 1.0710 8 1 -0.3707 -3.9858 0.1619 9 6 -0.3809 -5.0422 2.0362 10 8 -0.7656 -4.6673 3.1235 11 7 -0.4966 -6.3399 1.6910 12 6 -1.0865 -7.2977 2.6295 13 1 -0.8694 -7.0110 3.6585 14 6 -2.6163 -7.4193 2.4007 15 6 -2.8966 -8.8494 2.9258 16 7 -1.7193 -9.6382 2.5194 17 6 -1.6921 -10.9951 2.3365 18 1 -0.7756 -11.4811 2.0363 19 6 -2.8424 -11.7456 2.5372 20 7 -3.9591 -11.1532 2.9038 21 14 -2.8055 -13.5965 2.2870 22 1 -2.4470 -14.2616 3.5654 23 1 -4.1440 -14.0629 1.8447 24 1 -1.7959 -13.9359 1.2522 25 6 -0.5794 -8.7267 2.3422 26 1 -0.2096 -8.7900 1.3188 27 6 0.5354 -9.0905 3.3249 28 6 1.6900 -4.4336 0.7435 29 6 2.4003 -3.1023 0.6355 30 8 3.4867 -2.9342 0.1231 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6767 1.9562 0.8901 38 1 1.6055 -0.2619 2.1369 39 1 3.1264 -0.6444 1.2950 40 1 0.4746 -2.7757 2.8178 41 1 -0.4346 -2.0215 1.4744 42 1 -0.1886 -6.6398 0.8215 43 1 -3.1590 -6.6755 2.9841 44 1 -2.8607 -7.3370 1.3416 45 1 -3.7996 -9.2518 2.4667 46 1 -2.9925 -8.8428 4.0115 47 1 -4.7631 -11.6777 3.0436 48 1 0.1514 -9.0433 4.3439 49 1 0.8884 -10.1005 3.1161 50 1 1.3608 -8.3871 3.2147 51 1 1.7428 -4.9722 -0.2027 52 1 2.1209 -5.0318 1.5465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088604131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:01 Heat of formation + Delta-G solvation = -53.455757 kcal Electronic energy + Delta-G solvation = -30093.072141 eV Core-core repulsion = 26092.822007 eV Total energy + Delta-G solvation = -4000.250134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.12320 -39.54349 -37.70644 -37.02573 -35.77354 -34.16186 -32.50542 -31.75909 -30.41642 -28.72392 -28.19208 -27.40037 -26.76661 -24.92959 -24.04460 -23.00471 -21.09552 -20.43976 -20.25096 -19.59746 -19.50246 -17.62351 -17.18571 -16.83276 -16.26332 -16.01150 -15.44047 -15.10241 -14.86028 -14.75861 -14.43893 -14.08105 -13.89318 -13.82730 -13.60714 -13.29639 -13.15549 -13.00692 -12.83403 -12.65394 -12.22189 -12.16956 -12.08862 -11.83210 -11.67613 -11.61232 -11.57562 -11.23437 -11.18834 -11.09879 -10.90098 -10.87176 -10.63854 -10.50119 -10.17565 -10.12558 -9.81521 -9.71992 -9.59074 -8.97386 -8.75640 -8.67498 -6.92031 -5.69625 -3.12555 2.31106 2.55778 2.63548 3.17961 3.37087 3.42382 3.44037 3.94141 4.05821 4.42626 4.43419 4.46982 4.53159 4.61122 4.66513 4.91734 5.02194 5.11704 5.17998 5.22695 5.25497 5.26024 5.37518 5.38502 5.41879 5.47722 5.49037 5.52248 5.56961 5.63428 5.71691 5.76196 5.87233 5.90344 6.07002 6.18455 6.24254 6.25308 6.28665 6.46411 6.54274 6.64720 6.80263 6.81676 7.04103 7.46290 7.58248 7.59067 7.80700 7.89168 8.22406 8.31108 9.16461 9.77383 10.40644 11.33696 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028245 B = 0.002142 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.081763 B =13067.398655 C =13539.677458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.130 3.870 5 N -0.617 5.617 6 C 0.114 3.886 7 C -0.124 4.124 8 H 0.118 0.882 9 C 0.524 3.476 10 O -0.537 6.537 11 N -0.710 5.710 12 C 0.133 3.867 13 H 0.095 0.905 14 C -0.153 4.153 15 C 0.152 3.848 16 N -0.595 5.595 17 C -0.221 4.221 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.155 3.845 26 H 0.036 0.964 27 C -0.155 4.155 28 C -0.147 4.147 29 C 0.521 3.479 30 O -0.531 6.531 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.400 0.600 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.014 0.986 47 H 0.252 0.748 48 H 0.052 0.948 49 H 0.054 0.946 50 H 0.037 0.963 51 H 0.111 0.889 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.533 21.751 -5.509 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 C -0.203 4.203 4 C 0.008 3.992 5 N -0.350 5.350 6 C -0.009 4.009 7 C -0.146 4.146 8 H 0.136 0.864 9 C 0.309 3.691 10 O -0.414 6.414 11 N -0.359 5.359 12 C 0.029 3.971 13 H 0.113 0.887 14 C -0.192 4.192 15 C 0.027 3.973 16 N -0.320 5.320 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.047 3.953 26 H 0.054 0.946 27 C -0.215 4.215 28 C -0.187 4.187 29 C 0.308 3.692 30 O -0.408 6.408 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.234 0.766 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.127 0.873 46 H 0.033 0.967 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.057 0.943 51 H 0.130 0.870 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.691 21.976 -4.965 24.148 hybrid contribution 0.051 -1.159 -0.462 1.249 sum 8.742 20.818 -5.427 23.222 Atomic orbital electron populations 1.21957 0.94853 1.02069 1.01921 1.21546 0.96481 0.96497 0.98911 1.21770 1.01190 0.95238 1.02083 1.21493 1.00868 0.78776 0.98025 1.48300 1.20794 1.07734 1.58199 1.22143 0.86403 0.92634 0.99725 1.22291 0.97075 0.95080 1.00158 0.86374 1.19952 0.78807 0.82950 0.87414 1.90718 1.49365 1.78353 1.22986 1.46048 1.62291 1.07710 1.19888 1.22212 0.93849 0.87843 0.93183 0.88716 1.23397 0.94088 1.00696 1.01044 1.21959 0.93642 0.84983 0.96714 1.44488 1.04657 1.02711 1.80168 1.19016 0.95926 0.80830 1.39098 0.90447 1.24794 0.95806 0.98263 1.01750 1.69791 1.00388 1.33437 1.53284 0.86079 0.76830 0.84859 0.77755 1.21640 1.21670 1.20703 1.21001 0.89667 0.88134 0.96531 0.94626 1.22245 0.97949 1.00745 1.00567 1.22371 0.93563 0.96942 1.05856 1.20762 0.84750 0.86674 0.76971 1.90733 1.20253 1.84820 1.44980 0.92510 0.92599 0.92225 0.90783 0.92448 0.92319 0.92451 0.90132 0.89923 0.88981 0.89333 0.76604 0.91994 0.91945 0.87295 0.96749 0.93675 0.92926 0.92692 0.94348 0.87046 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.58 37.16 0.32 -0.62 16 2 C -0.11 -0.79 3.13 -90.62 -0.28 -1.08 16 3 C -0.14 -0.81 9.19 37.16 0.34 -0.47 16 4 C 0.13 1.00 5.35 -4.04 -0.02 0.98 16 5 N -0.62 -5.55 2.70 -172.30 -0.47 -6.02 16 6 C 0.11 0.96 6.09 -3.03 -0.02 0.94 16 7 C -0.12 -1.04 3.56 -90.04 -0.32 -1.36 16 8 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 9 C 0.52 6.35 7.07 -10.98 -0.08 6.27 16 10 O -0.54 -8.50 15.21 5.56 0.08 -8.41 16 11 N -0.71 -8.90 5.13 -52.03 -0.27 -9.16 16 12 C 0.13 2.23 2.85 -66.09 -0.19 2.04 16 13 H 0.09 1.72 7.25 -51.93 -0.38 1.34 16 14 C -0.15 -2.82 6.77 -24.58 -0.17 -2.99 16 15 C 0.15 3.56 5.89 -2.53 -0.01 3.54 16 16 N -0.60 -14.26 3.13 -162.57 -0.51 -14.77 16 17 C -0.22 -5.83 9.89 -15.06 -0.15 -5.98 16 18 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.08 10.09 55.49 0.56 -25.52 16 21 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 C 0.15 2.93 3.48 -66.95 -0.23 2.69 16 26 H 0.04 0.65 7.72 -51.93 -0.40 0.25 16 27 C -0.16 -2.76 9.13 37.16 0.34 -2.42 16 28 C -0.15 -1.25 6.36 -26.75 -0.17 -1.42 16 29 C 0.52 5.74 8.02 -10.86 -0.09 5.65 16 30 O -0.53 -7.81 17.59 5.56 0.10 -7.71 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.39 5.67 -51.93 -0.29 0.10 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 40 H 0.09 0.91 7.07 -51.93 -0.37 0.55 16 41 H 0.09 0.63 5.92 -51.93 -0.31 0.32 16 42 H 0.40 4.07 8.37 -40.82 -0.34 3.73 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.05 1.01 8.05 -51.93 -0.42 0.60 16 50 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.11 0.98 7.90 -51.92 -0.41 0.57 16 LS Contribution 407.44 15.07 6.14 6.14 Total: -1.00 -32.27 407.44 -9.31 -41.57 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -9.10 Total: 2.00 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -0.83 Total: 5.39 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.68 Total: -55.47 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.18 Total: -16.13 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.27 -9.31 -41.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088604131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.883 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds