Wall clock time and date at job start Tue Mar 31 2020 20:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.87307 * 2 1 4 4 C 1.54316 * 109.88477 * 238.98335 * 2 1 3 5 5 H 1.09005 * 110.71951 * 336.93028 * 4 2 1 6 6 N 1.46503 * 110.72141 * 100.02293 * 4 2 1 7 7 C 1.34782 * 119.99859 * 204.99886 * 6 4 2 8 8 O 1.21275 * 120.00360 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99532 * 180.02562 * 7 6 4 10 10 N 1.46504 * 109.47087 * 180.02562 * 9 7 6 11 11 C 1.44871 * 112.61484 * 89.99493 * 10 9 7 12 12 C 1.53182 * 111.78848 * 180.20515 * 11 10 9 13 13 C 1.53058 * 109.10058 * 279.36760 * 12 11 10 14 14 C 1.51480 * 111.50995 * 58.25517 * 13 12 11 15 15 C 1.52477 * 107.05148 * 66.74051 * 14 13 12 16 16 C 1.53064 * 110.86784 * 282.13787 * 15 14 13 17 17 C 1.32030 * 112.61239 * 269.76657 * 10 9 7 18 18 O 1.21284 * 118.29739 * 351.58528 * 17 10 9 19 19 C 1.55156 * 102.94317 * 218.39080 * 4 2 1 20 20 C 1.54910 * 101.58335 * 35.49934 * 19 4 2 21 21 N 1.47019 * 109.88345 * 121.17149 * 2 1 3 22 22 C 1.36941 * 125.65202 * 298.34099 * 21 2 1 23 23 H 1.08003 * 119.99342 * 349.83572 * 22 21 2 24 24 C 1.38814 * 120.00252 * 169.83473 * 22 21 2 25 25 N 1.31613 * 119.99960 * 350.48073 * 24 22 21 26 26 Si 1.86798 * 119.99736 * 170.47877 * 24 22 21 27 27 H 1.48506 * 109.47154 * 94.14015 * 26 24 22 28 28 H 1.48504 * 109.46826 * 214.13786 * 26 24 22 29 29 H 1.48494 * 109.47245 * 334.13637 * 26 24 22 30 30 H 1.09001 * 109.46981 * 181.01937 * 1 2 3 31 31 H 1.08999 * 109.46923 * 301.02113 * 1 2 3 32 32 H 1.09000 * 109.46957 * 61.01723 * 1 2 3 33 33 H 0.96996 * 120.00037 * 25.00772 * 6 4 2 34 34 H 1.09003 * 109.47105 * 299.99834 * 9 7 6 35 35 H 1.08999 * 109.47351 * 60.00048 * 9 7 6 36 36 H 1.08998 * 109.01781 * 300.80171 * 11 10 9 37 37 H 1.09000 * 109.01833 * 59.68970 * 11 10 9 38 38 H 1.09003 * 109.53262 * 39.25194 * 12 11 10 39 39 H 1.09000 * 109.53347 * 159.40776 * 12 11 10 40 40 H 1.09005 * 109.07037 * 178.77822 * 13 12 11 41 41 H 1.08994 * 109.07152 * 297.72743 * 13 12 11 42 42 H 1.08990 * 109.94114 * 186.12960 * 14 13 12 43 43 H 1.09006 * 109.93485 * 307.36517 * 14 13 12 44 44 H 1.09002 * 109.19032 * 42.49295 * 15 14 13 45 45 H 1.08992 * 109.19733 * 161.82294 * 15 14 13 46 46 H 1.09004 * 109.62272 * 83.92574 * 16 15 14 47 47 H 1.08993 * 109.62097 * 204.29962 * 16 15 14 48 48 H 1.09005 * 111.00404 * 153.57710 * 19 4 2 49 49 H 1.08998 * 111.00387 * 277.38276 * 19 4 2 50 50 H 1.09007 * 110.36286 * 81.82836 * 20 19 4 51 51 H 1.08997 * 110.36737 * 204.15165 * 20 19 4 52 52 H 0.97000 * 120.00097 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 1.3040 -1.4414 -1.6220 6 7 2.4555 0.1993 -2.2872 7 6 2.4582 -0.1835 -3.5795 8 8 2.1286 -1.3116 -3.8786 9 6 2.8708 0.7906 -4.6529 10 7 2.7889 0.1382 -5.9621 11 6 1.4885 0.2936 -6.5815 12 6 1.4223 -0.3995 -7.9460 13 6 2.0682 0.5045 -8.9987 14 6 3.5068 0.8246 -8.6487 15 6 4.2915 -0.4791 -8.7463 16 6 4.0516 -1.3535 -7.5132 17 6 3.9187 -0.4515 -6.3070 18 8 4.8991 -0.2633 -5.6183 19 6 3.2876 -1.5132 -0.6944 20 6 2.8145 -1.8804 0.7343 21 7 2.0300 -0.7156 1.1829 22 6 1.8047 -0.3591 2.4858 23 1 1.3585 0.5975 2.7144 24 6 2.1498 -1.2272 3.5126 25 7 2.5169 -2.4605 3.2361 26 14 2.0933 -0.6449 5.2865 27 1 0.7796 -0.9986 5.8820 28 1 3.1792 -1.3014 6.0579 29 1 2.2760 0.8281 5.3301 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3633 0.5296 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 2.7188 1.1016 -2.0481 34 1 2.2056 1.6539 -4.6353 35 1 3.8950 1.1173 -4.4728 36 1 0.7299 -0.1364 -5.9275 37 1 1.2826 1.3558 -6.7135 38 1 1.9594 -1.3468 -7.9000 39 1 0.3811 -0.5833 -8.2112 40 1 2.0403 0.0016 -9.9655 41 1 1.5026 1.4338 -9.0656 42 1 3.9075 1.5533 -9.3532 43 1 3.5637 1.2174 -7.6334 44 1 3.9755 -1.0215 -9.6374 45 1 5.3548 -0.2524 -8.8229 46 1 3.1353 -1.9289 -7.6451 47 1 4.8935 -2.0321 -7.3763 48 1 3.4852 -2.4092 -1.2829 49 1 4.1656 -0.8681 -0.6622 50 1 2.1886 -2.7725 0.7091 51 1 3.6716 -2.0357 1.3895 52 1 2.7577 -3.0673 3.9536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088606475.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:55 Heat of formation + Delta-G solvation = -28.558150 kcal Electronic energy + Delta-G solvation = -30789.695316 eV Core-core repulsion = 26790.524824 eV Total energy + Delta-G solvation = -3999.170492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.38803 -39.39103 -37.56241 -37.33437 -35.40005 -33.96245 -32.13866 -31.98601 -30.39045 -29.94141 -28.72505 -27.18055 -26.20734 -24.42583 -23.96133 -22.45068 -21.51412 -20.52163 -20.14955 -19.59791 -18.95760 -17.52625 -16.91438 -16.79299 -16.64353 -16.27124 -15.71003 -15.19063 -14.75593 -14.61566 -14.36465 -14.15364 -13.90389 -13.84130 -13.52850 -13.18136 -12.99992 -12.87348 -12.76626 -12.43985 -12.19130 -12.08907 -11.94440 -11.74149 -11.63457 -11.54530 -11.16690 -11.11326 -11.09632 -10.91256 -10.76182 -10.57574 -10.38417 -10.30598 -10.05838 -9.86441 -9.82481 -9.79257 -9.62441 -8.80962 -8.64145 -8.53935 -6.82858 -5.73906 -3.07537 2.46518 2.74787 2.81031 3.39546 3.44480 3.47103 3.52420 4.25535 4.30365 4.36537 4.49509 4.50389 4.64046 4.78576 4.81763 4.92863 4.98852 5.11598 5.22644 5.27437 5.31345 5.37657 5.42304 5.44210 5.48199 5.55669 5.56913 5.60616 5.62259 5.69529 5.76005 5.83316 5.85223 5.94207 6.07349 6.14703 6.26596 6.32724 6.36717 6.54187 6.64041 6.73049 6.90540 7.14100 7.41546 7.52103 7.60014 7.74162 7.79474 8.00141 8.25648 8.43425 9.18757 9.80972 10.47975 11.38773 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030488 B = 0.002302 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.161834 B =12159.581473 C =12540.042661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.137 3.863 5 H 0.093 0.907 6 N -0.714 5.714 7 C 0.501 3.499 8 O -0.539 6.539 9 C 0.056 3.944 10 N -0.580 5.580 11 C 0.127 3.873 12 C -0.152 4.152 13 C -0.119 4.119 14 C -0.137 4.137 15 C -0.114 4.114 16 C -0.144 4.144 17 C 0.538 3.462 18 O -0.551 6.551 19 C -0.154 4.154 20 C 0.175 3.825 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.076 0.924 24 C -0.006 4.006 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.398 0.602 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.028 0.972 51 H 0.071 0.929 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 7.931 -26.473 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.032 3.968 5 H 0.111 0.889 6 N -0.365 5.365 7 C 0.285 3.715 8 O -0.415 6.415 9 C -0.071 4.071 10 N -0.312 5.312 11 C 0.005 3.995 12 C -0.189 4.189 13 C -0.157 4.157 14 C -0.174 4.174 15 C -0.152 4.152 16 C -0.183 4.183 17 C 0.327 3.673 18 O -0.429 6.429 19 C -0.194 4.194 20 C 0.049 3.951 21 N -0.319 5.319 22 C -0.355 4.355 23 H 0.094 0.906 24 C -0.203 4.203 25 N -0.563 5.563 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.232 0.768 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.046 0.954 51 H 0.089 0.911 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.008 7.054 -26.232 27.183 hybrid contribution -0.130 0.607 1.186 1.338 sum -1.138 7.661 -25.047 26.217 Atomic orbital electron populations 1.22226 0.97899 1.01428 0.99737 1.21020 0.92527 0.94805 0.86962 0.94709 1.22112 0.97420 0.90805 0.86420 0.88901 1.46028 1.68141 1.16257 1.06058 1.20921 0.77671 0.89108 0.83777 1.90678 1.47938 1.20645 1.82280 1.21668 1.06041 0.95455 0.83968 1.46578 1.12249 1.53941 1.18403 1.21293 0.82879 1.00662 0.94672 1.22303 1.02449 1.00637 0.93533 1.21401 0.95913 0.99675 0.98677 1.21576 0.95465 0.97351 1.03052 1.21445 1.01119 0.95902 0.96730 1.22299 1.04803 0.98177 0.93024 1.19709 0.81630 0.79723 0.86229 1.90735 1.35750 1.62500 1.53894 1.23384 0.96910 0.99485 0.99608 1.21401 0.95590 0.89388 0.88683 1.44488 1.58377 1.28937 1.00117 1.18953 1.36320 0.99835 0.80432 0.90640 1.24831 1.02101 0.95390 0.97997 1.69959 1.51150 1.04285 1.30888 0.86143 0.77258 0.77830 0.84737 1.21652 1.21634 1.20627 0.92952 0.92693 0.94555 0.76800 0.87885 0.85833 0.90857 0.91147 0.89214 0.90001 0.91693 0.92025 0.91286 0.90628 0.90835 0.91464 0.88499 0.88540 0.92014 0.91968 0.95368 0.91068 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.13 37.16 0.34 -2.54 16 2 C 0.15 3.12 3.48 -66.96 -0.23 2.88 16 3 H 0.04 0.67 7.71 -51.93 -0.40 0.27 16 4 C 0.14 2.53 2.85 -66.10 -0.19 2.35 16 5 H 0.09 1.86 7.25 -51.93 -0.38 1.48 16 6 N -0.71 -10.52 5.18 -52.03 -0.27 -10.79 16 7 C 0.50 7.46 7.80 -10.98 -0.09 7.37 16 8 O -0.54 -10.03 16.00 5.56 0.09 -9.94 16 9 C 0.06 0.62 5.37 -5.19 -0.03 0.59 16 10 N -0.58 -6.16 1.50 -176.79 -0.27 -6.43 16 11 C 0.13 0.98 5.19 -4.82 -0.03 0.96 16 12 C -0.15 -0.93 5.63 -26.61 -0.15 -1.08 16 13 C -0.12 -0.62 5.21 -27.47 -0.14 -0.77 16 14 C -0.14 -0.91 5.65 -27.77 -0.16 -1.06 16 15 C -0.11 -0.79 5.61 -26.97 -0.15 -0.94 16 16 C -0.14 -1.33 5.54 -27.61 -0.15 -1.49 16 17 C 0.54 6.75 5.23 -11.95 -0.06 6.69 16 18 O -0.55 -9.05 15.59 5.55 0.09 -8.96 16 19 C -0.15 -3.16 6.77 -24.58 -0.17 -3.32 16 20 C 0.17 4.32 5.42 -2.53 -0.01 4.31 16 21 N -0.59 -14.90 3.13 -162.57 -0.51 -15.40 16 22 C -0.23 -6.21 9.85 -15.06 -0.15 -6.36 16 23 H 0.08 2.00 7.85 -52.48 -0.41 1.58 16 24 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 25 N -0.92 -26.99 10.69 55.49 0.59 -26.40 16 26 Si 0.91 21.99 29.56 -169.99 -5.03 16.97 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 4.79 8.37 -40.82 -0.34 4.45 16 34 H 0.10 0.76 7.78 -51.93 -0.40 0.35 16 35 H 0.12 1.46 6.58 -51.93 -0.34 1.11 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.41 7.88 -51.93 -0.41 0.00 16 38 H 0.09 0.62 4.13 -51.93 -0.21 0.41 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.29 7.84 -51.93 -0.41 -0.11 16 41 H 0.06 0.29 8.13 -51.93 -0.42 -0.14 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.63 4.90 -51.93 -0.25 0.38 16 44 H 0.07 0.39 7.72 -51.93 -0.40 -0.01 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.79 5.09 -51.93 -0.26 0.52 16 47 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.03 0.76 8.07 -51.92 -0.42 0.34 16 51 H 0.07 1.95 6.94 -51.93 -0.36 1.59 16 52 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -34.60 392.99 -9.62 -44.22 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.79 Total: 3.50 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.46 Total: 7.31 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.45 Total: -59.02 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.18 Total: -18.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.60 -9.62 -44.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088606475.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.662 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds