Wall clock time and date at job start Tue Mar 31 2020 20:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21281 * 120.00035 * 2 1 4 4 N 1.34773 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63034 * 6.23910 * 4 2 1 6 6 C 1.53195 * 108.77890 * 126.39342 * 5 4 2 7 7 C 1.53038 * 109.31090 * 54.63236 * 6 5 4 8 8 C 1.53045 * 109.54141 * 298.63584 * 7 6 5 9 9 C 1.46927 * 120.63256 * 186.24028 * 4 2 1 10 10 H 1.08992 * 109.70752 * 113.74695 * 9 4 2 11 11 C 1.53003 * 109.58394 * 353.38912 * 9 4 2 12 12 C 1.50700 * 109.46989 * 72.23481 * 11 9 4 13 13 O 1.21284 * 119.99859 * 359.97438 * 12 11 9 14 14 N 1.34778 * 120.00302 * 179.97438 * 12 11 9 15 15 C 1.46497 * 119.99948 * 179.97438 * 14 12 11 16 16 H 1.08994 * 110.64419 * 323.31603 * 15 14 12 17 17 C 1.55163 * 110.71955 * 86.45310 * 15 14 12 18 18 C 1.54910 * 101.58216 * 153.86422 * 17 15 14 19 19 N 1.47429 * 104.83096 * 322.99032 * 18 17 15 20 20 C 1.36935 * 125.64825 * 204.09539 * 19 18 17 21 21 H 1.08004 * 120.00320 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00328 * 0.02562 * 20 19 18 23 23 N 1.31622 * 119.99376 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00306 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47124 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47411 * 120.00101 * 24 22 20 27 27 H 1.48506 * 109.47008 * 240.00325 * 24 22 20 28 28 C 1.47024 * 108.70460 * 24.12999 * 19 18 17 29 29 H 1.08996 * 109.87931 * 239.52562 * 28 19 18 30 30 C 1.52999 * 109.88436 * 118.35475 * 28 19 18 31 31 H 1.09003 * 109.46778 * 239.99579 * 1 2 3 32 32 H 1.08994 * 109.47301 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.47663 * 119.99784 * 1 2 3 34 34 H 1.08999 * 109.58855 * 6.60430 * 5 4 2 35 35 H 1.09009 * 109.58585 * 246.17910 * 5 4 2 36 36 H 1.09000 * 109.49713 * 294.68352 * 6 5 4 37 37 H 1.08997 * 109.49805 * 174.58660 * 6 5 4 38 38 H 1.09004 * 109.46087 * 178.61750 * 7 6 5 39 39 H 1.08998 * 109.45193 * 58.65126 * 7 6 5 40 40 H 1.09000 * 109.49451 * 301.41495 * 8 7 6 41 41 H 1.09000 * 109.52385 * 181.33381 * 8 7 6 42 42 H 1.08998 * 109.47688 * 312.23271 * 11 9 4 43 43 H 1.09004 * 109.47044 * 192.22657 * 11 9 4 44 44 H 0.96999 * 119.99568 * 359.97438 * 14 12 11 45 45 H 1.08997 * 111.00364 * 271.93612 * 17 15 14 46 46 H 1.09007 * 111.00234 * 35.75122 * 17 15 14 47 47 H 1.08995 * 110.36833 * 81.82667 * 18 17 15 48 48 H 1.08995 * 110.36746 * 204.04765 * 18 17 15 49 49 H 0.97002 * 119.99853 * 180.02562 * 23 22 20 50 50 H 1.08994 * 109.46825 * 302.19479 * 30 28 19 51 51 H 1.08996 * 109.46691 * 62.19418 * 30 28 19 52 52 H 1.08994 * 109.47119 * 182.19259 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4668 -2.4438 -0.1385 6 6 2.0847 -3.2317 -1.2979 7 6 3.5906 -3.3756 -1.0662 8 6 4.2371 -1.9890 -1.0257 9 6 3.6436 -1.1871 0.1369 10 1 3.9176 -1.6561 1.0818 11 6 4.1817 0.2447 0.0998 12 6 3.8294 0.9472 1.3857 13 8 3.2085 0.3605 2.2467 14 7 4.2042 2.2273 1.5789 15 6 3.8611 2.9103 2.8287 16 1 2.8748 2.6031 3.1762 17 6 4.9351 2.6390 3.9152 18 6 4.7925 3.8930 4.8134 19 7 4.5175 4.9983 3.8773 20 6 4.7679 6.3240 4.1121 21 1 4.5288 7.0604 3.3591 22 6 5.3290 6.7214 5.3180 23 7 5.6207 5.8239 6.2355 24 14 5.6699 8.5298 5.6386 25 1 5.2549 9.3287 4.4575 26 1 4.9045 8.9741 6.8311 27 1 7.1219 8.7243 5.8816 28 6 3.9290 4.4417 2.6504 29 1 4.5565 4.6877 1.7937 30 6 2.5210 5.0047 2.4467 31 1 -0.3633 -0.5139 0.8900 32 1 -0.3633 1.0276 0.0005 33 1 -0.3634 -0.5138 -0.8900 34 1 0.4140 -2.2530 -0.3465 35 1 1.5612 -3.0168 0.7840 36 1 1.9098 -2.7000 -2.2332 37 1 1.6285 -4.2202 -1.3500 38 1 4.0289 -3.9570 -1.8774 39 1 3.7650 -3.8854 -0.1187 40 1 4.0419 -1.4690 -1.9635 41 1 5.3130 -2.0927 -0.8843 42 1 3.7366 0.7786 -0.7397 43 1 5.2653 0.2226 -0.0169 44 1 4.7011 2.6963 0.8904 45 1 4.7059 1.7309 4.4729 46 1 5.9309 2.5840 3.4751 47 1 3.9623 3.7693 5.5087 48 1 5.7185 4.0767 5.3582 49 1 6.0125 6.1016 7.0783 50 1 1.9069 4.7708 3.3162 51 1 2.5768 6.0860 2.3215 52 1 2.0765 4.5584 1.5572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088915796.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:31 Heat of formation + Delta-G solvation = -32.004365 kcal Electronic energy + Delta-G solvation = -31308.013486 eV Core-core repulsion = 27308.693555 eV Total energy + Delta-G solvation = -3999.319931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.00862 -38.92458 -37.52286 -37.22445 -33.70827 -33.52060 -32.90728 -31.81937 -30.22966 -29.60406 -28.85313 -27.72964 -25.17061 -24.33549 -23.87038 -22.62096 -21.37524 -20.33760 -19.82173 -19.44078 -19.07847 -17.11506 -16.68141 -16.55288 -16.28754 -15.68357 -15.36106 -14.90053 -14.70078 -14.57475 -14.17575 -13.93774 -13.80484 -13.67183 -13.36786 -13.31199 -12.75506 -12.72196 -12.60684 -12.47800 -12.27839 -12.02249 -11.99111 -11.59209 -11.43994 -11.37704 -11.24133 -11.06530 -11.02030 -10.97558 -10.79034 -10.72958 -10.32682 -10.22473 -9.99824 -9.61336 -9.49901 -9.36936 -8.99654 -8.70652 -8.58927 -8.25706 -6.78082 -5.57944 -3.00183 2.45664 2.84514 3.43588 3.48271 3.51075 3.51595 3.74766 4.28414 4.39440 4.50046 4.55323 4.65626 4.73035 4.90824 4.96348 5.08042 5.16806 5.18741 5.24505 5.32136 5.45235 5.47984 5.49856 5.51771 5.58059 5.63126 5.67716 5.71178 5.71586 5.75969 5.81699 5.87284 6.01533 6.09252 6.27765 6.41953 6.48163 6.50379 6.55126 6.73914 6.81438 6.88186 7.05622 7.31281 7.35473 7.62363 7.71319 7.93747 8.13641 8.17788 8.43139 8.88945 9.28697 9.89749 10.55022 11.45403 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027484 B = 0.002562 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.514987 B =10926.303725 C =11352.881526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.524 3.476 3 O -0.534 6.534 4 N -0.601 5.601 5 C 0.108 3.892 6 C -0.135 4.135 7 C -0.120 4.120 8 C -0.132 4.132 9 C 0.164 3.836 10 H 0.081 0.919 11 C -0.140 4.140 12 C 0.551 3.449 13 O -0.569 6.569 14 N -0.715 5.715 15 C 0.144 3.856 16 H 0.085 0.915 17 C -0.153 4.153 18 C 0.154 3.846 19 N -0.596 5.596 20 C -0.215 4.215 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.156 3.844 29 H 0.034 0.966 30 C -0.152 4.152 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.393 0.607 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.012 0.988 48 H 0.107 0.893 49 H 0.251 0.749 50 H 0.049 0.951 51 H 0.051 0.949 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 -20.690 -18.047 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.314 3.686 3 O -0.413 6.413 4 N -0.335 5.335 5 C -0.015 4.015 6 C -0.173 4.173 7 C -0.157 4.157 8 C -0.170 4.170 9 C 0.060 3.940 10 H 0.099 0.901 11 C -0.180 4.180 12 C 0.340 3.660 13 O -0.449 6.449 14 N -0.364 5.364 15 C 0.039 3.961 16 H 0.103 0.897 17 C -0.192 4.192 18 C 0.029 3.971 19 N -0.321 5.321 20 C -0.344 4.344 21 H 0.095 0.905 22 C -0.208 4.208 23 N -0.571 5.571 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.048 3.952 29 H 0.052 0.948 30 C -0.212 4.212 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.226 0.774 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.030 0.970 48 H 0.125 0.875 49 H 0.061 0.939 50 H 0.068 0.932 51 H 0.070 0.930 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.163 -20.391 -17.258 27.658 hybrid contribution 0.245 1.074 -0.087 1.105 sum -6.919 -19.317 -17.345 26.868 Atomic orbital electron populations 1.21961 0.92375 1.05396 1.03569 1.20615 0.90358 0.83010 0.74575 1.90607 1.68836 1.32029 1.49812 1.47918 1.06969 1.06049 1.72563 1.21738 0.96425 0.84612 0.98763 1.21928 0.96349 1.00400 0.98651 1.21506 0.95097 0.96853 1.02280 1.22016 1.00307 0.95870 0.98840 1.20985 0.79054 0.95467 0.98447 0.90080 1.22179 1.00806 0.95294 0.99708 1.19824 0.77527 0.81741 0.86919 1.90615 1.41915 1.66190 1.46200 1.45841 1.58079 1.12922 1.19599 1.21947 0.98821 0.91832 0.83496 0.89726 1.23383 0.97767 1.00084 0.97998 1.21917 1.02183 0.82539 0.90477 1.44518 1.71545 1.03251 1.12822 1.19085 1.33657 0.81847 0.99794 0.90475 1.24786 1.01777 0.97834 0.96451 1.69826 1.49207 1.30776 1.07248 0.86012 0.77545 0.84346 0.77691 1.20588 1.21845 1.21838 1.20983 0.93012 0.90062 0.91162 0.94823 1.22197 0.98279 1.00867 0.99848 0.89465 0.89073 0.89924 0.89647 0.91196 0.91487 0.90666 0.91564 0.91554 0.91384 0.90537 0.86314 0.90688 0.77398 0.92292 0.92265 0.97013 0.87509 0.93862 0.93198 0.93018 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 8.75 36.00 0.31 -1.21 16 2 C 0.52 6.51 6.74 -10.99 -0.07 6.44 16 3 O -0.53 -8.42 10.72 -14.67 -0.16 -8.57 16 4 N -0.60 -6.20 2.88 -165.22 -0.48 -6.68 16 5 C 0.11 0.73 6.32 -3.71 -0.02 0.70 16 6 C -0.14 -0.71 6.08 -26.61 -0.16 -0.87 16 7 C -0.12 -0.70 5.88 -26.69 -0.16 -0.86 16 8 C -0.13 -0.98 5.34 -26.61 -0.14 -1.12 16 9 C 0.16 1.76 2.46 -67.59 -0.17 1.59 16 10 H 0.08 1.00 7.70 -51.93 -0.40 0.60 16 11 C -0.14 -1.74 4.70 -27.88 -0.13 -1.87 16 12 C 0.55 9.31 4.96 -10.98 -0.05 9.26 16 13 O -0.57 -11.40 14.39 -14.68 -0.21 -11.61 16 14 N -0.72 -12.38 5.20 -52.03 -0.27 -12.65 16 15 C 0.14 2.95 2.76 -66.09 -0.18 2.77 16 16 H 0.08 1.90 7.41 -51.93 -0.38 1.52 16 17 C -0.15 -3.31 6.77 -24.58 -0.17 -3.48 16 18 C 0.15 3.98 5.89 -2.53 -0.01 3.96 16 19 N -0.60 -15.70 3.13 -162.57 -0.51 -16.21 16 20 C -0.22 -6.10 9.89 -15.06 -0.15 -6.24 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 23 N -0.92 -27.53 10.09 55.49 0.56 -26.97 16 24 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.16 3.43 3.48 -66.95 -0.23 3.19 16 29 H 0.03 0.73 7.69 -51.93 -0.40 0.33 16 30 C -0.15 -3.14 9.14 37.16 0.34 -2.80 16 31 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 33 H 0.08 0.48 7.43 -51.93 -0.39 0.10 16 34 H 0.09 0.42 5.97 -51.93 -0.31 0.11 16 35 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.12 1.53 6.06 -51.95 -0.31 1.22 16 43 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.39 6.00 8.31 -40.82 -0.34 5.66 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.11 3.05 5.87 -51.93 -0.31 2.75 16 49 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 52 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 394.59 15.07 5.95 5.95 Total: -1.00 -34.75 394.59 -10.38 -45.13 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -9.14 Total: 5.14 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.10 Total: 8.97 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.69 Total: -62.51 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.37 Total: -20.18 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.75 -10.38 -45.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088915796.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.123 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds