Wall clock time and date at job start Tue Mar 31 2020 20:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99539 * 2 1 4 4 C 1.54326 * 109.88320 * 238.89863 * 2 1 3 5 5 H 1.09006 * 110.87179 * 336.82820 * 4 2 1 6 6 N 1.46495 * 110.71689 * 100.02658 * 4 2 1 7 7 C 1.34777 * 120.00110 * 199.97569 * 6 4 2 8 8 O 1.21286 * 119.99978 * 4.80512 * 7 6 4 9 9 C 1.50702 * 120.00131 * 184.79860 * 7 6 4 10 10 N 1.46897 * 112.85139 * 323.85889 * 9 7 6 11 11 C 1.47006 * 111.00289 * 284.79126 * 10 9 7 12 12 C 1.53100 * 109.25969 * 177.60354 * 11 10 9 13 13 O 1.43022 * 109.25489 * 56.85136 * 12 11 10 14 14 C 1.43012 * 113.73556 * 301.32748 * 13 12 11 15 15 C 1.47012 * 110.99909 * 161.15342 * 10 9 7 16 16 C 1.53783 * 113.69005 * 95.13189 * 9 7 6 17 17 C 1.53789 * 87.08052 * 89.12459 * 16 9 7 18 18 C 1.53776 * 87.08038 * 25.43318 * 17 16 9 19 19 C 1.55156 * 102.94275 * 218.39050 * 4 2 1 20 20 C 1.54903 * 101.58046 * 35.50380 * 19 4 2 21 21 N 1.47025 * 109.88020 * 121.09132 * 2 1 3 22 22 C 1.36928 * 125.65119 * 298.32075 * 21 2 1 23 23 H 1.08003 * 120.00392 * 0.02562 * 22 21 2 24 24 C 1.38812 * 120.00319 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99772 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00227 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46938 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.46981 * 120.00159 * 26 24 22 29 29 H 1.48507 * 109.46591 * 239.99704 * 26 24 22 30 30 H 1.08997 * 109.47047 * 181.09851 * 1 2 3 31 31 H 1.09005 * 109.47156 * 301.09758 * 1 2 3 32 32 H 1.08996 * 109.47365 * 61.09828 * 1 2 3 33 33 H 0.97004 * 120.00686 * 19.97549 * 6 4 2 34 34 H 1.09006 * 109.50386 * 57.67389 * 11 10 9 35 35 H 1.08997 * 109.54275 * 297.56458 * 11 10 9 36 36 H 1.08993 * 109.50730 * 176.78429 * 12 11 10 37 37 H 1.08998 * 109.51147 * 296.91743 * 12 11 10 38 38 H 1.08994 * 109.51094 * 298.73385 * 14 13 12 39 39 H 1.09006 * 109.54241 * 178.62514 * 14 13 12 40 40 H 1.08997 * 109.50787 * 302.33496 * 15 10 9 41 41 H 1.09004 * 109.50442 * 62.46036 * 15 10 9 42 42 H 1.08995 * 113.61426 * 203.67657 * 16 9 7 43 43 H 1.09003 * 113.60967 * 334.57967 * 16 9 7 44 44 H 1.09005 * 113.61373 * 270.88546 * 17 16 9 45 45 H 1.08996 * 113.60783 * 139.98213 * 17 16 9 46 46 H 1.09003 * 113.61330 * 220.01832 * 18 17 16 47 47 H 1.09007 * 113.61528 * 89.11445 * 18 17 16 48 48 H 1.08997 * 111.00151 * 153.57847 * 19 4 2 49 49 H 1.09002 * 111.00539 * 277.38698 * 19 4 2 50 50 H 1.09001 * 110.37229 * 81.82948 * 20 19 4 51 51 H 1.09005 * 110.36347 * 204.03851 * 20 19 4 52 52 H 0.97001 * 120.00329 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7497 -1.2426 5 1 1.3064 -1.4460 -1.6210 6 7 2.4555 0.1959 -2.2874 7 6 2.5559 -0.2162 -3.5667 8 8 2.2313 -1.3455 -3.8674 9 6 3.0715 0.7262 -4.6237 10 7 2.6436 2.1148 -4.4077 11 6 1.2300 2.2929 -4.7698 12 6 0.8107 3.7353 -4.4736 13 8 1.6689 4.6315 -5.1849 14 6 3.0531 4.4857 -4.8560 15 6 3.4950 3.0509 -5.1560 16 6 4.5775 0.5814 -4.8992 17 6 4.2035 -0.4772 -5.9501 18 6 2.8408 0.2269 -6.0598 19 6 3.2876 -1.5143 -0.6922 20 6 2.8145 -1.8794 0.7369 21 7 2.0300 -0.7140 1.1840 22 6 1.8050 -0.3555 2.4862 23 1 1.2143 0.5203 2.7110 24 6 2.3361 -1.1176 3.5177 25 7 3.0557 -2.1853 3.2439 26 14 2.0286 -0.6289 5.2942 27 1 1.1959 0.6000 5.3324 28 1 1.3197 -1.7298 5.9948 29 1 3.3263 -0.3683 5.9676 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3634 0.5308 0.8800 32 1 -0.3634 0.4967 -0.8996 33 1 2.6485 1.1186 -2.0586 34 1 0.6156 1.6080 -4.1854 35 1 1.0968 2.0859 -5.8315 36 1 -0.2200 3.8877 -4.7934 37 1 0.8924 3.9257 -3.4034 38 1 3.1999 4.6979 -3.7970 39 1 3.6446 5.1809 -5.4519 40 1 4.5339 2.9193 -4.8537 41 1 3.3987 2.8562 -6.2242 42 1 5.0318 1.4767 -5.3237 43 1 5.1390 0.1799 -4.0556 44 1 4.1413 -1.4886 -5.5481 45 1 4.7999 -0.4183 -6.8605 46 1 2.0003 -0.4608 -6.1532 47 1 2.8203 1.0253 -6.8017 48 1 3.4852 -2.4111 -1.2794 49 1 4.1656 -0.8691 -0.6609 50 1 2.1886 -2.7715 0.7131 51 1 3.6717 -2.0357 1.3919 52 1 3.4272 -2.7177 3.9647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088948624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:02 Heat of formation + Delta-G solvation = -12.984062 kcal Electronic energy + Delta-G solvation = -31629.946618 eV Core-core repulsion = 27631.451469 eV Total energy + Delta-G solvation = -3998.495149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.36413 -39.27239 -38.23893 -36.99130 -34.55853 -33.78225 -31.97834 -31.54704 -30.37012 -28.86335 -27.84544 -26.28685 -25.40875 -24.05605 -24.00157 -23.86411 -21.60991 -20.87102 -20.11460 -19.86384 -18.58650 -17.73570 -16.76712 -16.57634 -16.21092 -15.89555 -15.45342 -15.31415 -14.99240 -14.86722 -14.65787 -14.44293 -14.38337 -13.86292 -13.57942 -13.17956 -13.01669 -12.76050 -12.55933 -12.14101 -12.08029 -11.96651 -11.72340 -11.63483 -11.55646 -11.51638 -11.15377 -11.09949 -10.86482 -10.83873 -10.74665 -10.60792 -10.49657 -10.38905 -10.06874 -9.98260 -9.75739 -9.62948 -9.52165 -8.67960 -8.63222 -8.54790 -6.87268 -5.65673 -3.08359 2.65557 3.31112 3.32817 3.39180 3.44972 3.47139 3.59531 4.23562 4.33844 4.47145 4.57939 4.59080 4.64653 4.70283 4.84465 4.91751 5.00046 5.17566 5.19353 5.32553 5.33069 5.38961 5.42910 5.45167 5.51661 5.55909 5.59011 5.64926 5.66965 5.71979 5.77378 5.82555 5.83660 6.11722 6.13985 6.26743 6.32118 6.38181 6.50791 6.55215 6.59282 6.64754 6.71878 6.84742 6.88290 7.14387 7.52059 7.62926 7.82962 7.85373 8.34270 8.46181 9.20551 9.81523 10.45521 11.37746 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003157 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.583036 B = 8867.552257 C = 9825.313827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 H 0.036 0.964 4 C 0.134 3.866 5 H 0.090 0.910 6 N -0.699 5.699 7 C 0.545 3.455 8 O -0.542 6.542 9 C 0.068 3.932 10 N -0.520 5.520 11 C 0.018 3.982 12 C 0.065 3.935 13 O -0.386 6.386 14 C 0.063 3.937 15 C 0.013 3.987 16 C -0.131 4.131 17 C -0.134 4.134 18 C -0.149 4.149 19 C -0.152 4.152 20 C 0.154 3.846 21 N -0.595 5.595 22 C -0.219 4.219 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.921 5.921 26 Si 0.913 3.087 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.405 0.595 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.014 0.986 51 H 0.109 0.891 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 10.793 -19.892 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.054 0.946 4 C 0.029 3.971 5 H 0.108 0.892 6 N -0.349 5.349 7 C 0.329 3.671 8 O -0.419 6.419 9 C -0.025 4.025 10 N -0.245 5.245 11 C -0.110 4.110 12 C -0.012 4.012 13 O -0.305 6.305 14 C -0.014 4.014 15 C -0.115 4.115 16 C -0.169 4.169 17 C -0.172 4.172 18 C -0.189 4.189 19 C -0.192 4.192 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.347 4.347 23 H 0.096 0.904 24 C -0.206 4.206 25 N -0.569 5.569 26 Si 0.744 3.256 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.241 0.759 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.065 0.935 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.032 0.968 51 H 0.126 0.874 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.256 10.148 -19.461 21.984 hybrid contribution -0.142 0.189 0.419 0.481 sum 1.114 10.337 -19.043 21.696 Atomic orbital electron populations 1.22230 0.97934 1.01356 0.99846 1.20967 0.92521 0.94791 0.86846 0.94617 1.22164 0.97565 0.90887 0.86480 0.89213 1.45974 1.67940 1.14306 1.06648 1.19448 0.77631 0.87114 0.82913 1.90696 1.49336 1.20281 1.81550 1.22660 0.97890 0.87787 0.94182 1.62060 1.02917 1.02973 1.56570 1.22781 0.89290 0.98593 1.00344 1.22682 0.94171 0.87273 0.97123 1.87981 1.17016 1.59237 1.66257 1.22690 0.82489 0.94955 1.01241 1.22969 0.98607 0.93011 0.96885 1.23276 0.93047 1.00376 1.00174 1.22759 0.96213 0.99272 0.98966 1.23309 0.99757 1.00542 0.95259 1.23392 0.96795 0.99235 0.99786 1.21932 0.97342 0.88367 0.89508 1.44489 1.59243 1.28205 1.00077 1.19070 1.27012 1.08120 0.80519 0.90416 1.24782 1.00402 0.97395 0.98019 1.69809 1.39217 1.17894 1.30013 0.86017 0.77344 0.77533 0.84709 1.20548 1.21784 1.21781 0.92992 0.92746 0.94400 0.75892 0.89518 0.93360 0.88366 0.91849 0.91953 0.88460 0.88705 0.93482 0.88283 0.90309 0.88953 0.91113 0.90041 0.89825 0.92145 0.92032 0.96839 0.87368 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.14 37.16 0.34 -2.52 16 2 C 0.16 3.14 3.48 -66.95 -0.23 2.91 16 3 H 0.04 0.71 7.69 -51.93 -0.40 0.31 16 4 C 0.13 2.44 2.80 -66.10 -0.18 2.25 16 5 H 0.09 1.77 7.35 -51.93 -0.38 1.39 16 6 N -0.70 -10.49 5.16 -52.03 -0.27 -10.76 16 7 C 0.55 8.06 6.42 -10.98 -0.07 7.99 16 8 O -0.54 -9.83 15.06 5.55 0.08 -9.75 16 9 C 0.07 0.75 1.03 -131.94 -0.14 0.61 16 10 N -0.52 -5.03 4.15 -219.05 -0.91 -5.94 16 11 C 0.02 0.17 5.25 -3.71 -0.02 0.15 16 12 C 0.06 0.57 7.01 37.21 0.26 0.83 16 13 O -0.39 -3.83 10.83 -35.23 -0.38 -4.21 16 14 C 0.06 0.49 7.01 37.21 0.26 0.75 16 15 C 0.01 0.10 4.50 -3.71 -0.02 0.09 16 16 C -0.13 -1.26 6.75 -25.91 -0.17 -1.43 16 17 C -0.13 -1.34 7.69 -25.92 -0.20 -1.54 16 18 C -0.15 -1.54 5.75 -25.92 -0.15 -1.69 16 19 C -0.15 -3.03 6.77 -24.59 -0.17 -3.20 16 20 C 0.15 3.74 5.89 -2.53 -0.01 3.72 16 21 N -0.60 -14.76 3.13 -162.57 -0.51 -15.27 16 22 C -0.22 -5.93 9.89 -15.06 -0.15 -6.08 16 23 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 24 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 25 N -0.92 -26.56 10.09 55.49 0.56 -26.00 16 26 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.41 5.58 7.82 -40.82 -0.32 5.26 16 34 H 0.09 0.93 7.73 -51.93 -0.40 0.53 16 35 H 0.05 0.47 7.14 -51.93 -0.37 0.10 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.64 5.98 -51.93 -0.31 0.33 16 41 H 0.05 0.37 6.82 -51.93 -0.35 0.02 16 42 H 0.10 0.74 5.37 -51.93 -0.28 0.46 16 43 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 44 H 0.09 1.11 7.63 -51.93 -0.40 0.72 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.99 7.63 -51.93 -0.40 0.59 16 47 H 0.08 0.75 6.57 -51.93 -0.34 0.41 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.11 2.95 5.88 -51.93 -0.31 2.65 16 52 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -30.73 391.44 -10.16 -40.90 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.87 Total: 5.87 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.75 Total: 2.47 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -1.13 Total: -57.97 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.30 Total: -13.96 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.73 -10.16 -40.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088948624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.911 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds