Wall clock time and date at job start Tue Mar 31 2020 20:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08988 * 109.99824 * 2 1 4 4 C 1.54323 * 109.88044 * 238.90118 * 2 1 3 5 5 H 1.08994 * 110.87802 * 336.82851 * 4 2 1 6 6 N 1.46509 * 110.71710 * 100.03223 * 4 2 1 7 7 C 1.34777 * 119.99643 * 199.97316 * 6 4 2 8 8 O 1.21277 * 120.00377 * 5.02858 * 7 6 4 9 9 C 1.50693 * 119.99508 * 185.02417 * 7 6 4 10 10 H 1.09003 * 109.47510 * 55.61518 * 9 7 6 11 11 C 1.53004 * 109.47372 * 295.61487 * 9 7 6 12 12 C 1.52998 * 117.49746 * 134.17780 * 11 9 7 13 13 C 1.52999 * 117.49607 * 65.51937 * 11 9 7 14 14 N 1.46900 * 109.47071 * 175.61733 * 9 7 6 15 15 C 1.47011 * 111.00002 * 58.63664 * 14 9 7 16 16 C 1.53096 * 109.26018 * 177.60878 * 15 14 9 17 17 O 1.43025 * 109.26006 * 56.84507 * 16 15 14 18 18 C 1.43018 * 113.73568 * 301.33494 * 17 16 15 19 19 C 1.47017 * 110.99941 * 295.00165 * 14 9 7 20 20 C 1.55153 * 102.94228 * 218.39004 * 4 2 1 21 21 C 1.54908 * 101.58000 * 35.50698 * 20 4 2 22 22 N 1.47024 * 109.87770 * 121.10045 * 2 1 3 23 23 C 1.36937 * 125.64646 * 298.31750 * 22 2 1 24 24 H 1.08009 * 119.99979 * 0.02562 * 23 22 2 25 25 C 1.38811 * 119.99971 * 180.02562 * 23 22 2 26 26 N 1.31610 * 120.00102 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99985 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47417 * 59.99245 * 27 25 23 29 29 H 1.48497 * 109.47132 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.46673 * 299.99654 * 27 25 23 31 31 H 1.08995 * 109.47246 * 181.09464 * 1 2 3 32 32 H 1.08992 * 109.47431 * 301.09612 * 1 2 3 33 33 H 1.09000 * 109.46884 * 61.09802 * 1 2 3 34 34 H 0.96998 * 119.99671 * 19.97260 * 6 4 2 35 35 H 1.09000 * 115.55134 * 279.85101 * 11 9 7 36 36 H 1.08998 * 117.50034 * 0.02562 * 12 11 9 37 37 H 1.09001 * 117.49928 * 145.02709 * 12 11 9 38 38 H 1.09003 * 117.49977 * 214.97956 * 13 11 9 39 39 H 1.08997 * 117.50144 * 359.97438 * 13 11 9 40 40 H 1.09002 * 109.50718 * 297.54061 * 15 14 9 41 41 H 1.09003 * 109.51114 * 57.67401 * 15 14 9 42 42 H 1.08998 * 109.50708 * 296.91540 * 16 15 14 43 43 H 1.09005 * 109.54613 * 176.80009 * 16 15 14 44 44 H 1.08999 * 109.50504 * 298.73026 * 18 17 16 45 45 H 1.09004 * 109.53851 * 178.62115 * 18 17 16 46 46 H 1.08997 * 109.50054 * 302.32555 * 19 14 9 47 47 H 1.08989 * 109.50675 * 62.45633 * 19 14 9 48 48 H 1.09000 * 111.00615 * 153.58123 * 20 4 2 49 49 H 1.09001 * 111.00887 * 277.39382 * 20 4 2 50 50 H 1.08998 * 110.36750 * 81.82831 * 21 20 4 51 51 H 1.09003 * 110.36902 * 204.03848 * 21 20 4 52 52 H 0.97002 * 120.00266 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3065 -1.4458 -1.6211 6 7 2.4556 0.1961 -2.2875 7 6 2.5560 -0.2160 -3.5668 8 8 2.2275 -1.3439 -3.8682 9 6 3.0765 0.7248 -4.6227 10 1 4.0578 1.0958 -4.3270 11 6 2.1115 1.9020 -4.7773 12 6 2.7149 3.3068 -4.8369 13 6 1.9583 2.8508 -3.5868 14 7 3.1877 0.0116 -5.9021 15 6 1.8864 -0.5318 -6.3172 16 6 2.0352 -1.2133 -7.6800 17 8 3.0421 -2.2255 -7.5939 18 6 4.3226 -1.7309 -7.1927 19 6 4.1969 -1.0547 -5.8249 20 6 3.2876 -1.5143 -0.6924 21 6 2.8144 -1.8795 0.7368 22 7 2.0300 -0.7142 1.1839 23 6 1.8049 -0.3557 2.4862 24 1 1.2142 0.5201 2.7109 25 6 2.3360 -1.1180 3.5176 26 7 3.0554 -2.1856 3.2438 27 14 2.0283 -0.6295 5.2942 28 1 0.5677 -0.6309 5.5623 29 1 2.6979 -1.5996 6.1974 30 1 2.5744 0.7303 5.5352 31 1 -0.3633 -1.0274 0.0196 32 1 -0.3634 0.5307 0.8799 33 1 -0.3633 0.4967 -0.8997 34 1 2.6486 1.1186 -2.0585 35 1 1.2267 1.7082 -5.3835 36 1 3.7992 3.3923 -4.7665 37 1 2.2266 4.0372 -5.4821 38 1 0.9726 3.2815 -3.4101 39 1 2.5445 2.6361 -2.6934 40 1 1.5446 -1.2600 -5.5816 41 1 1.1609 0.2782 -6.3927 42 1 2.3252 -0.4742 -8.4269 43 1 1.0864 -1.6673 -7.9663 44 1 4.6790 -1.0068 -7.9253 45 1 5.0286 -2.5588 -7.1259 46 1 5.1580 -0.6262 -5.5410 47 1 3.8921 -1.7911 -5.0815 48 1 3.4852 -2.4111 -1.2796 49 1 4.1656 -0.8691 -0.6609 50 1 2.1885 -2.7715 0.7128 51 1 3.6715 -2.0359 1.3918 52 1 3.4262 -2.7185 3.9645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089053573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:11 Heat of formation + Delta-G solvation = -3.679804 kcal Electronic energy + Delta-G solvation = -31403.600360 eV Core-core repulsion = 27405.508673 eV Total energy + Delta-G solvation = -3998.091686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.92255 -38.98198 -37.87651 -37.21073 -35.15358 -33.90060 -32.06755 -31.26997 -30.43195 -29.52778 -28.41702 -25.62757 -24.55634 -24.14822 -23.97895 -22.68757 -21.54190 -20.81705 -20.33643 -20.17004 -19.35336 -17.26739 -17.01811 -16.74789 -16.33876 -15.80538 -15.48146 -15.23374 -15.12200 -14.82059 -14.74820 -14.53703 -14.10472 -13.79067 -13.66513 -13.38389 -12.90584 -12.68595 -12.35345 -12.19199 -12.12259 -11.93303 -11.79743 -11.57704 -11.36222 -11.19278 -11.09638 -10.91939 -10.85513 -10.81821 -10.66964 -10.57061 -10.52165 -10.38670 -10.15207 -10.02277 -9.79928 -9.75147 -9.61371 -8.71854 -8.63587 -8.17265 -6.91566 -5.68805 -3.11986 2.61601 3.17971 3.37011 3.38331 3.42364 3.43422 3.77285 3.84950 4.30426 4.45007 4.58464 4.64307 4.78595 4.84190 4.87774 5.01324 5.02460 5.15457 5.24834 5.30149 5.36365 5.37877 5.39383 5.41354 5.49699 5.50913 5.59361 5.64564 5.73839 5.77944 5.83373 5.85872 5.93693 6.06660 6.08986 6.21860 6.27776 6.33870 6.49621 6.57531 6.66255 6.67424 6.75485 6.83603 7.05139 7.07268 7.47519 7.58236 7.66754 7.81274 8.29759 8.34269 9.16926 9.77883 10.41666 11.34455 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.002894 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.774148 B = 9671.937639 C =10504.076215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.034 0.966 4 C 0.133 3.867 5 H 0.091 0.909 6 N -0.710 5.710 7 C 0.489 3.511 8 O -0.537 6.537 9 C 0.096 3.904 10 H 0.107 0.893 11 C -0.145 4.145 12 C -0.162 4.162 13 C -0.179 4.179 14 N -0.503 5.503 15 C -0.012 4.012 16 C 0.069 3.931 17 O -0.384 6.384 18 C 0.070 3.930 19 C 0.003 3.997 20 C -0.152 4.152 21 C 0.154 3.846 22 N -0.595 5.595 23 C -0.222 4.222 24 H 0.077 0.923 25 C -0.009 4.009 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.395 0.605 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.014 0.986 51 H 0.109 0.891 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 8.640 -20.443 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.051 0.949 4 C 0.028 3.972 5 H 0.109 0.891 6 N -0.363 5.363 7 C 0.273 3.727 8 O -0.415 6.415 9 C -0.016 4.016 10 H 0.124 0.876 11 C -0.164 4.164 12 C -0.199 4.199 13 C -0.217 4.217 14 N -0.227 5.227 15 C -0.140 4.140 16 C -0.008 4.008 17 O -0.302 6.302 18 C -0.007 4.007 19 C -0.125 4.125 20 C -0.192 4.192 21 C 0.029 3.971 22 N -0.320 5.320 23 C -0.351 4.351 24 H 0.095 0.905 25 C -0.205 4.205 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.233 0.767 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.073 0.927 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.032 0.968 51 H 0.127 0.873 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.878 7.873 -20.826 22.282 hybrid contribution -0.353 0.446 1.813 1.900 sum 0.525 8.318 -19.013 20.760 Atomic orbital electron populations 1.22232 0.97877 1.01430 0.99870 1.20965 0.92599 0.94643 0.86929 0.94856 1.22164 0.97598 0.90952 0.86502 0.89125 1.46490 1.68521 1.13951 1.07307 1.21754 0.78246 0.88786 0.83868 1.90587 1.49488 1.20968 1.80493 1.21429 0.99553 0.92739 0.87897 0.87564 1.22120 1.00976 0.89917 1.03348 1.23003 1.00222 0.96258 1.00445 1.23106 1.02798 1.03326 0.92437 1.62634 1.07941 1.26718 1.25378 1.23273 0.91388 1.00562 0.98739 1.22606 0.91915 0.90598 0.95711 1.87988 1.19274 1.34220 1.88755 1.22577 0.85596 0.98466 0.94090 1.22963 0.95850 0.94429 0.99295 1.23387 0.96709 0.99220 0.99870 1.21933 0.97363 0.88382 0.89454 1.44475 1.59255 1.28205 1.00054 1.18974 1.27331 1.08244 0.80514 0.90514 1.24786 1.00296 0.97340 0.98063 1.69778 1.39009 1.17772 1.30335 0.86161 0.77669 0.77431 0.84263 1.21212 1.21563 1.21165 0.92957 0.92718 0.94367 0.76734 0.86878 0.88443 0.88495 0.87941 0.88648 0.88889 0.90338 0.93003 0.88794 0.92749 0.88639 0.90251 0.91072 0.92154 0.92142 0.96813 0.87336 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.14 37.16 0.34 -2.50 16 2 C 0.16 3.09 3.48 -66.95 -0.23 2.86 16 3 H 0.03 0.64 7.68 -51.94 -0.40 0.24 16 4 C 0.13 2.37 2.80 -66.09 -0.19 2.19 16 5 H 0.09 1.77 7.34 -51.93 -0.38 1.39 16 6 N -0.71 -10.08 4.96 -52.03 -0.26 -10.34 16 7 C 0.49 6.87 6.47 -10.99 -0.07 6.80 16 8 O -0.54 -9.32 11.29 5.56 0.06 -9.26 16 9 C 0.10 1.04 2.40 -68.87 -0.16 0.88 16 10 H 0.11 1.05 7.93 -51.93 -0.41 0.63 16 11 C -0.14 -1.31 4.99 -90.62 -0.45 -1.76 16 12 C -0.16 -1.19 10.18 -26.69 -0.27 -1.46 16 13 C -0.18 -1.46 9.43 -26.69 -0.25 -1.71 16 14 N -0.50 -5.65 4.72 -227.73 -1.07 -6.72 16 15 C -0.01 -0.14 5.01 -3.71 -0.02 -0.16 16 16 C 0.07 0.73 7.01 37.21 0.26 0.99 16 17 O -0.38 -4.90 10.83 -35.23 -0.38 -5.29 16 18 C 0.07 0.74 7.01 37.21 0.26 1.00 16 19 C 0.00 0.03 5.32 -3.71 -0.02 0.01 16 20 C -0.15 -2.99 6.77 -24.59 -0.17 -3.16 16 21 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 22 N -0.59 -14.64 3.13 -162.58 -0.51 -15.15 16 23 C -0.22 -5.98 9.89 -15.06 -0.15 -6.13 16 24 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 25 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 26 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 27 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 4.82 5.27 -40.82 -0.22 4.61 16 35 H 0.11 1.04 6.14 -51.93 -0.32 0.73 16 36 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.79 5.81 -51.93 -0.30 0.49 16 40 H 0.09 1.39 5.15 -51.93 -0.27 1.12 16 41 H 0.08 0.80 6.03 -51.93 -0.31 0.48 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 47 H 0.07 1.05 6.00 -51.94 -0.31 0.73 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.11 2.94 5.87 -51.93 -0.31 2.64 16 52 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -30.92 390.35 -10.65 -41.58 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -8.68 Total: 7.31 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.23 Total: 1.20 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -1.28 Total: -58.09 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.32 Total: -14.55 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.92 -10.65 -41.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089053573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.896 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds