Wall clock time and date at job start Tue Mar 31 2020 20:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.99423 * 2 1 4 4 C 1.54333 * 109.98884 * 238.96467 * 2 1 3 5 5 H 1.09003 * 110.66923 * 337.04850 * 4 2 1 6 6 N 1.46504 * 110.85079 * 100.19513 * 4 2 1 7 7 C 1.34769 * 120.00287 * 200.14445 * 6 4 2 8 8 O 1.21280 * 120.00173 * 355.56620 * 7 6 4 9 9 C 1.50703 * 120.00184 * 175.56091 * 7 6 4 10 10 H 1.08997 * 109.46980 * 324.61812 * 9 7 6 11 11 C 1.53003 * 109.46932 * 84.61403 * 9 7 6 12 12 C 1.53000 * 117.49838 * 11.33255 * 11 9 7 13 13 C 1.52994 * 117.50045 * 302.71022 * 11 9 7 14 14 N 1.46900 * 109.47168 * 204.61796 * 9 7 6 15 15 C 1.47011 * 110.99861 * 178.73406 * 14 9 7 16 16 C 1.53102 * 109.25794 * 177.60556 * 15 14 9 17 17 O 1.43016 * 109.25998 * 56.84667 * 16 15 14 18 18 C 1.43019 * 113.73566 * 301.33204 * 17 16 15 19 19 C 1.47006 * 111.00197 * 55.09463 * 14 9 7 20 20 C 1.55154 * 103.01912 * 218.66193 * 4 2 1 21 21 C 1.54903 * 101.58088 * 35.31022 * 20 4 2 22 22 N 1.47021 * 109.88359 * 121.09878 * 2 1 3 23 23 C 1.36935 * 125.64604 * 298.39483 * 22 2 1 24 24 H 1.07997 * 120.00146 * 348.73346 * 23 22 2 25 25 C 1.38808 * 119.99793 * 168.74409 * 23 22 2 26 26 N 1.31626 * 120.00184 * 330.70841 * 25 23 22 27 27 Si 1.86795 * 120.00320 * 150.71576 * 25 23 22 28 28 H 1.48499 * 109.47639 * 179.97438 * 27 25 23 29 29 H 1.48500 * 109.47021 * 299.99990 * 27 25 23 30 30 H 1.48508 * 109.47165 * 59.99492 * 27 25 23 31 31 H 1.09004 * 109.46982 * 300.35137 * 1 2 3 32 32 H 1.09000 * 109.47694 * 60.35610 * 1 2 3 33 33 H 1.09003 * 109.46681 * 180.35866 * 1 2 3 34 34 H 0.97002 * 119.99751 * 20.14479 * 6 4 2 35 35 H 1.09002 * 115.54600 * 157.03237 * 11 9 7 36 36 H 1.09006 * 117.49879 * 359.97438 * 12 11 9 37 37 H 1.09000 * 117.50083 * 145.01474 * 12 11 9 38 38 H 1.09003 * 117.49689 * 214.97670 * 13 11 9 39 39 H 1.08994 * 117.49887 * 359.97438 * 13 11 9 40 40 H 1.08998 * 109.50872 * 297.53746 * 15 14 9 41 41 H 1.08999 * 109.50940 * 57.67290 * 15 14 9 42 42 H 1.08997 * 109.50525 * 296.91185 * 16 15 14 43 43 H 1.09002 * 109.50699 * 176.78235 * 16 15 14 44 44 H 1.08999 * 109.50490 * 298.73608 * 18 17 16 45 45 H 1.09001 * 109.53832 * 178.62337 * 18 17 16 46 46 H 1.08993 * 109.50905 * 302.32860 * 19 14 9 47 47 H 1.09005 * 109.50763 * 62.41657 * 19 14 9 48 48 H 1.09001 * 111.00749 * 277.23192 * 20 4 2 49 49 H 1.08999 * 111.00315 * 153.38312 * 20 4 2 50 50 H 1.09007 * 110.36699 * 204.14955 * 21 20 4 51 51 H 1.09002 * 110.36969 * 81.82946 * 21 20 4 52 52 H 0.96996 * 119.99349 * 357.59095 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3066 -1.4405 -1.6226 6 7 2.4636 0.1969 -2.2864 7 6 2.5637 -0.2145 -3.5658 8 8 2.3964 -1.3836 -3.8418 9 6 2.8835 0.7781 -4.6537 10 1 2.4103 1.7330 -4.4249 11 6 4.3992 0.9681 -4.7413 12 6 5.2802 -0.0142 -3.9669 13 6 5.1278 1.4271 -3.4767 14 7 2.3778 0.2764 -5.9385 15 6 2.6458 1.2348 -7.0206 16 6 2.1574 0.6477 -8.3475 17 8 0.7676 0.3283 -8.2390 18 6 0.4708 -0.6032 -7.1952 19 6 0.9421 -0.0288 -5.8566 20 6 3.2863 -1.5183 -0.6916 21 6 2.8099 -1.8825 0.7367 22 7 2.0301 -0.7141 1.1839 23 6 1.8038 -0.3565 2.4862 24 1 1.3732 0.6072 2.7145 25 6 2.1282 -1.2326 3.5128 26 7 2.0948 -2.5318 3.3045 27 14 2.6119 -0.5679 5.1902 28 1 2.9080 -1.6997 6.1047 29 1 3.8179 0.2879 5.0544 30 1 1.4939 0.2368 5.7450 31 1 -0.3633 0.5193 0.8869 32 1 -0.3634 0.5083 -0.8931 33 1 -0.3633 -1.0277 0.0064 34 1 2.6603 1.1185 -2.0564 35 1 4.7726 1.3332 -5.6980 36 1 4.7800 -0.7956 -3.3946 37 1 6.2335 -0.2957 -4.4141 38 1 5.9810 2.0939 -3.6015 39 1 4.5274 1.5941 -2.5825 40 1 2.1189 2.1676 -6.8195 41 1 3.7171 1.4266 -7.0798 42 1 2.7219 -0.2565 -8.5751 43 1 2.3020 1.3779 -9.1438 44 1 0.9863 -1.5438 -7.3893 45 1 -0.6044 -0.7784 -7.1577 46 1 0.7697 -0.7592 -5.0662 47 1 0.3880 0.8837 -5.6361 48 1 4.1670 -0.8768 -0.6580 49 1 3.4807 -2.4154 -1.2793 50 1 3.6656 -2.0412 1.3931 51 1 2.1802 -2.7718 0.7113 52 1 1.8099 -2.8778 2.4443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089053574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:16 Heat of formation + Delta-G solvation = -9.959552 kcal Electronic energy + Delta-G solvation = -31352.611258 eV Core-core repulsion = 27354.247261 eV Total energy + Delta-G solvation = -3998.363997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.89101 -39.31816 -38.07881 -36.97787 -35.38154 -34.17319 -32.16278 -31.45124 -30.62838 -29.54876 -28.34073 -25.73588 -24.80919 -24.31508 -23.83559 -22.62969 -21.73434 -20.86899 -20.31853 -20.19457 -19.32599 -17.44333 -17.33769 -17.01179 -16.43142 -16.09718 -15.89384 -15.36820 -15.14233 -14.67269 -14.58195 -14.42687 -14.03131 -13.92478 -13.79165 -13.49571 -13.06101 -12.97737 -12.80300 -12.51023 -12.30014 -11.97152 -11.82595 -11.65215 -11.62563 -11.42969 -11.39572 -10.92385 -10.86224 -10.74528 -10.57724 -10.53973 -10.40553 -10.36060 -10.09574 -10.01998 -9.97249 -9.57348 -9.55272 -8.81132 -8.62382 -8.41329 -7.00815 -6.15480 -3.12208 2.59905 2.90964 3.41877 3.47940 3.52591 3.59850 3.70142 3.72651 4.35764 4.55033 4.56090 4.59772 4.65826 4.72374 4.78104 4.87564 4.93322 5.01025 5.05825 5.09542 5.18976 5.27463 5.30890 5.35014 5.39575 5.41033 5.48892 5.49647 5.64558 5.65155 5.70326 5.74216 5.86255 5.94707 5.99052 6.03600 6.09564 6.18167 6.32317 6.45305 6.48891 6.55540 6.62922 6.76665 6.87512 6.93693 6.98451 7.02829 7.57697 7.73636 8.27525 8.45503 8.98841 9.80103 10.32736 11.21553 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002767 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.807186 B =10118.086679 C =10722.216492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 H 0.037 0.963 4 C 0.139 3.861 5 H 0.091 0.909 6 N -0.717 5.717 7 C 0.520 3.480 8 O -0.519 6.519 9 C 0.099 3.901 10 H 0.063 0.937 11 C -0.146 4.146 12 C -0.168 4.168 13 C -0.177 4.177 14 N -0.509 5.509 15 C 0.016 3.984 16 C 0.065 3.935 17 O -0.388 6.388 18 C 0.068 3.932 19 C 0.010 3.990 20 C -0.143 4.143 21 C 0.145 3.855 22 N -0.595 5.595 23 C -0.338 4.338 24 H 0.068 0.932 25 C -0.025 4.025 26 N -0.918 5.918 27 Si 1.066 2.934 28 H -0.286 1.286 29 H -0.294 1.294 30 H -0.294 1.294 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.396 0.604 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.039 0.961 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.026 0.974 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 9.297 -21.394 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.049 3.951 3 H 0.054 0.946 4 C 0.034 3.966 5 H 0.109 0.891 6 N -0.369 5.369 7 C 0.305 3.695 8 O -0.394 6.394 9 C -0.012 4.012 10 H 0.080 0.920 11 C -0.164 4.164 12 C -0.205 4.205 13 C -0.215 4.215 14 N -0.235 5.235 15 C -0.112 4.112 16 C -0.012 4.012 17 O -0.307 6.307 18 C -0.009 4.009 19 C -0.117 4.117 20 C -0.183 4.183 21 C 0.019 3.981 22 N -0.321 5.321 23 C -0.465 4.465 24 H 0.085 0.915 25 C -0.227 4.227 26 N -0.559 5.559 27 Si 0.896 3.104 28 H -0.211 1.211 29 H -0.222 1.222 30 H -0.221 1.221 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.231 0.769 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.057 0.943 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.075 0.925 51 H 0.044 0.956 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.329 7.670 -20.169 21.834 hybrid contribution -0.703 1.625 -0.945 2.007 sum 2.625 9.294 -21.114 23.218 Atomic orbital electron populations 1.22214 0.97735 1.01349 1.00018 1.21005 0.92552 0.94962 0.86541 0.94583 1.22097 0.97045 0.90812 0.86647 0.89105 1.46207 1.69424 1.14174 1.07096 1.20149 0.76864 0.89414 0.83102 1.90704 1.48592 1.17693 1.82377 1.21170 0.95036 0.95675 0.89363 0.91961 1.22100 0.90776 1.06276 0.97288 1.23091 1.01281 0.93187 1.02927 1.23077 1.02870 0.98436 0.97125 1.61887 1.15842 1.42981 1.02793 1.22888 1.02166 0.93975 0.92209 1.22642 0.82442 1.00245 0.95844 1.87970 1.24705 1.63989 1.54008 1.22637 1.00918 0.92084 0.85254 1.22967 0.87182 1.01208 1.00390 1.23195 0.97198 0.99820 0.98065 1.21551 0.94993 0.90409 0.91147 1.44609 1.58016 1.28770 1.00718 1.19671 1.44523 1.01368 0.80954 0.91459 1.25700 1.00211 0.94123 1.02644 1.70814 1.47058 1.12138 1.25901 0.83493 0.76400 0.75032 0.75506 1.21114 1.22177 1.22097 0.92454 0.94459 0.93095 0.76885 0.86560 0.87986 0.88508 0.88165 0.88633 0.93857 0.89193 0.92103 0.88456 0.91887 0.88374 0.88013 0.94307 0.91527 0.91435 0.92491 0.95625 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.14 37.16 0.34 -2.52 16 2 C 0.16 3.06 3.48 -66.95 -0.23 2.83 16 3 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 4 C 0.14 2.37 2.73 -66.09 -0.18 2.18 16 5 H 0.09 1.68 7.47 -51.93 -0.39 1.29 16 6 N -0.72 -9.72 4.76 -52.03 -0.25 -9.97 16 7 C 0.52 7.15 3.75 -10.99 -0.04 7.11 16 8 O -0.52 -8.95 14.51 5.56 0.08 -8.87 16 9 C 0.10 1.08 2.27 -68.86 -0.16 0.93 16 10 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 11 C -0.15 -1.39 5.64 -90.62 -0.51 -1.90 16 12 C -0.17 -1.84 9.72 -26.73 -0.26 -2.10 16 13 C -0.18 -1.63 9.96 -26.74 -0.27 -1.89 16 14 N -0.51 -5.65 4.34 -227.72 -0.99 -6.64 16 15 C 0.02 0.13 5.43 -3.71 -0.02 0.11 16 16 C 0.07 0.55 7.01 37.21 0.26 0.81 16 17 O -0.39 -4.20 10.83 -35.23 -0.38 -4.58 16 18 C 0.07 0.70 7.01 37.21 0.26 0.96 16 19 C 0.01 0.12 5.22 -3.71 -0.02 0.10 16 20 C -0.14 -2.64 6.77 -24.59 -0.17 -2.81 16 21 C 0.14 3.34 5.19 -2.53 -0.01 3.32 16 22 N -0.59 -14.43 3.08 -162.57 -0.50 -14.93 16 23 C -0.34 -9.22 9.64 -15.06 -0.15 -9.37 16 24 H 0.07 1.83 7.98 -52.49 -0.42 1.41 16 25 C -0.03 -0.70 5.06 -17.43 -0.09 -0.79 16 26 N -0.92 -27.46 12.87 55.49 0.71 -26.74 16 27 Si 1.07 25.08 30.01 -169.99 -5.10 19.98 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.40 4.60 7.03 -40.82 -0.29 4.31 16 35 H 0.12 0.94 6.09 -51.93 -0.32 0.62 16 36 H 0.10 1.41 6.38 -51.93 -0.33 1.08 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.92 6.37 -51.93 -0.33 0.59 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.63 6.01 -51.93 -0.31 0.32 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.10 1.37 5.82 -51.93 -0.30 1.07 16 47 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 49 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.06 1.44 7.64 -51.92 -0.40 1.05 16 51 H 0.03 0.64 6.89 -51.93 -0.36 0.28 16 52 H 0.27 8.08 5.74 -40.82 -0.23 7.84 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -32.15 394.73 -10.50 -42.65 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.78 Total: 6.20 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.24 Total: -3.03 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -1.02 Total: -58.29 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.30 Total: -13.45 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.10 Total: 19.98 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.15 -10.50 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089053574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.685 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds