Wall clock time and date at job start Tue Mar 31 2020 20:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00332 * 2 1 4 4 N 1.34785 * 120.00048 * 179.97438 * 2 1 3 5 5 C 1.46492 * 119.99850 * 180.02562 * 4 2 1 6 6 C 1.53009 * 109.47006 * 205.00111 * 5 4 2 7 7 C 1.53004 * 109.47013 * 300.00413 * 6 5 4 8 8 C 1.52998 * 109.46826 * 299.99587 * 7 6 5 9 9 C 1.50706 * 109.47261 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99379 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00206 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99952 * 180.02562 * 11 9 8 13 13 H 1.08993 * 110.63981 * 325.69738 * 12 11 9 14 14 C 1.55164 * 110.71988 * 88.84202 * 12 11 9 15 15 C 1.55122 * 101.48190 * 153.73334 * 14 12 11 16 16 N 1.47424 * 104.94575 * 323.21984 * 15 14 12 17 17 C 1.36931 * 125.64837 * 203.96826 * 16 15 14 18 18 H 1.08003 * 120.00409 * 169.89601 * 17 16 15 19 19 C 1.38821 * 120.00211 * 349.89160 * 17 16 15 20 20 N 1.31620 * 119.99767 * 350.46787 * 19 17 16 21 21 Si 1.86800 * 120.00149 * 170.46640 * 19 17 16 22 22 H 1.48504 * 109.47045 * 94.13646 * 21 19 17 23 23 H 1.48496 * 109.47084 * 214.13835 * 21 19 17 24 24 H 1.48498 * 109.47194 * 334.13749 * 21 19 17 25 25 C 1.47024 * 108.70083 * 24.00778 * 16 15 14 26 26 H 1.09003 * 109.88015 * 239.51922 * 25 16 15 27 27 C 1.52999 * 109.88364 * 118.35738 * 25 16 15 28 28 C 1.53003 * 109.47105 * 60.00099 * 8 7 6 29 29 C 1.52992 * 109.47301 * 299.99971 * 28 8 7 30 30 H 1.09001 * 109.47312 * 270.00233 * 1 2 3 31 31 H 1.09004 * 109.47032 * 30.00114 * 1 2 3 32 32 H 1.08995 * 109.47402 * 150.00046 * 1 2 3 33 33 H 0.97003 * 119.99273 * 0.02562 * 4 2 1 34 34 H 1.08999 * 109.47772 * 324.99950 * 5 4 2 35 35 H 1.08999 * 109.47261 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.46753 * 59.99675 * 6 5 4 37 37 H 1.08997 * 109.47050 * 59.99418 * 7 6 5 38 38 H 1.08998 * 109.46896 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47639 * 300.00323 * 8 7 6 40 40 H 0.97002 * 119.99946 * 359.97438 * 11 9 8 41 41 H 1.08994 * 111.00115 * 271.94042 * 14 12 11 42 42 H 1.08997 * 111.00179 * 35.79030 * 14 12 11 43 43 H 1.09000 * 110.41927 * 204.28922 * 15 14 12 44 44 H 1.08997 * 110.20732 * 82.04393 * 15 14 12 45 45 H 0.96993 * 119.99896 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.47055 * 302.19166 * 27 25 16 47 47 H 1.09007 * 109.46993 * 62.18863 * 27 25 16 48 48 H 1.08997 * 109.47170 * 182.18985 * 27 25 16 49 49 H 1.08999 * 109.46958 * 60.00103 * 28 8 7 50 50 H 1.09004 * 109.47254 * 179.97438 * 28 8 7 51 51 H 1.09005 * 109.47367 * 179.97438 * 29 28 8 52 52 H 1.08999 * 109.47222 * 299.99970 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1561 -2.4748 -0.6081 7 6 3.6457 -3.6562 0.2193 8 6 4.1552 -3.5302 1.6564 9 6 3.6530 -4.6943 2.4714 10 8 2.9566 -5.5414 1.9534 11 7 3.9778 -4.7938 3.7755 12 6 3.4900 -5.9257 4.5675 13 1 2.4960 -6.2262 4.2366 14 6 4.4792 -7.1184 4.4876 15 6 4.1897 -7.8499 5.8245 16 7 3.9310 -6.7738 6.7984 17 6 4.0822 -6.8726 8.1557 18 1 4.0258 -5.9869 8.7713 19 6 4.3079 -8.1111 8.7407 20 7 4.1910 -9.2086 8.0238 21 14 4.7777 -8.2200 10.5454 22 1 3.5562 -8.4319 11.3630 23 1 5.7112 -9.3573 10.7462 24 1 5.4391 -6.9573 10.9618 25 6 3.4829 -5.5773 6.0709 26 1 4.1654 -4.7494 6.2629 27 6 2.0668 -5.2007 6.5110 28 6 3.6450 -2.2227 2.2656 29 6 4.1553 -1.0413 1.4383 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6958 -2.0073 0.0005 34 1 4.0095 -0.3256 -0.5884 35 1 5.2461 -2.4746 -0.6081 36 1 3.7931 -2.5645 -1.6319 37 1 2.5557 -3.6561 0.2189 38 1 4.0096 -4.5876 -0.2144 39 1 5.2452 -3.5302 1.6569 40 1 4.5351 -4.1164 4.1896 41 1 4.2537 -7.7563 3.6331 42 1 5.5109 -6.7685 4.4505 43 1 5.0542 -8.4389 6.1307 44 1 3.3120 -8.4880 5.7221 45 1 4.3483 -10.0740 8.4326 46 1 1.3956 -6.0409 6.3334 47 1 2.0694 -4.9560 7.5733 48 1 1.7265 -4.3368 5.9401 49 1 2.5550 -2.2227 2.2652 50 1 4.0076 -2.1331 3.2897 51 1 3.7914 -0.1098 1.8720 52 1 5.2453 -1.0413 1.4386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089077250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:07 Heat of formation + Delta-G solvation = -71.979036 kcal Electronic energy + Delta-G solvation = -30348.676248 eV Core-core repulsion = 26347.622885 eV Total energy + Delta-G solvation = -4001.053363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.77591 -39.70776 -38.18058 -37.26318 -34.13436 -33.91345 -32.11052 -31.14599 -31.09846 -30.39093 -29.17319 -28.44726 -25.10006 -24.02427 -23.39114 -22.93614 -21.49818 -20.59065 -20.16469 -19.71509 -19.27104 -17.38500 -17.06305 -16.78480 -16.31906 -16.00930 -15.76680 -15.03504 -14.80466 -14.54486 -14.27446 -14.12012 -13.95151 -13.91559 -13.57904 -13.07920 -12.99178 -12.84261 -12.79553 -12.53270 -12.42254 -12.33135 -12.12585 -12.00184 -11.58371 -11.51148 -11.17508 -11.14151 -10.94795 -10.80987 -10.78957 -10.60013 -10.58771 -10.39141 -10.15810 -10.08373 -9.86556 -9.68053 -9.50817 -9.33890 -8.69210 -8.58322 -6.86788 -5.77680 -3.11263 2.36014 2.76239 2.93364 3.31882 3.37214 3.43407 3.44989 4.31046 4.33013 4.44059 4.49797 4.54841 4.76002 4.81175 4.88589 4.99395 5.05799 5.08339 5.11030 5.18315 5.26049 5.33093 5.40484 5.47423 5.48364 5.52053 5.57498 5.68949 5.73951 5.77762 5.79224 5.84768 5.99160 6.03541 6.09897 6.21150 6.22509 6.28834 6.32019 6.49806 6.59513 6.66201 6.87055 7.09730 7.20549 7.47057 7.55788 7.71708 7.75431 7.93524 8.21760 8.39904 9.15179 9.77212 10.43922 11.34991 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022066 B = 0.002280 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.643300 B =12279.527978 C =12763.242522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.511 3.489 3 O -0.550 6.550 4 N -0.724 5.724 5 C 0.143 3.857 6 C -0.127 4.127 7 C -0.099 4.099 8 C -0.108 4.108 9 C 0.515 3.485 10 O -0.544 6.544 11 N -0.715 5.715 12 C 0.136 3.864 13 H 0.092 0.908 14 C -0.154 4.154 15 C 0.174 3.826 16 N -0.594 5.594 17 C -0.227 4.227 18 H 0.076 0.924 19 C -0.006 4.006 20 N -0.916 5.916 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.155 3.845 26 H 0.035 0.965 27 C -0.154 4.154 28 C -0.109 4.109 29 C -0.129 4.129 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.402 0.598 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.397 0.603 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.028 0.972 45 H 0.253 0.747 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.036 0.964 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.071 0.929 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 15.481 -17.919 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.298 3.702 3 O -0.428 6.428 4 N -0.377 5.377 5 C 0.038 3.962 6 C -0.165 4.165 7 C -0.137 4.137 8 C -0.129 4.129 9 C 0.301 3.699 10 O -0.421 6.421 11 N -0.365 5.365 12 C 0.031 3.969 13 H 0.110 0.890 14 C -0.194 4.194 15 C 0.049 3.951 16 N -0.319 5.319 17 C -0.356 4.356 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.563 5.563 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.047 3.953 26 H 0.052 0.948 27 C -0.213 4.213 28 C -0.147 4.147 29 C -0.167 4.167 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.231 0.769 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.090 0.910 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.250 15.436 -18.120 23.910 hybrid contribution 0.207 -0.331 1.323 1.380 sum -2.043 15.105 -16.797 22.682 Atomic orbital electron populations 1.21903 0.91842 1.04819 1.04925 1.20822 0.90611 0.83553 0.75231 1.90717 1.70829 1.31466 1.49811 1.46274 1.07341 1.08817 1.75281 1.20972 0.79813 0.98680 0.96705 1.21872 1.01817 0.93436 0.99411 1.21322 1.01204 0.98359 0.92800 1.21386 1.02157 0.93643 0.95732 1.20537 0.80291 0.86823 0.82284 1.90688 1.38224 1.42341 1.70894 1.46112 1.53029 1.27272 1.10063 1.22118 0.98414 0.85590 0.90763 0.88998 1.23422 0.98271 0.97273 1.00447 1.21438 1.00167 0.89859 0.83643 1.44484 1.77033 1.07958 1.02422 1.18953 1.42656 0.93026 0.80934 0.90639 1.24832 1.02166 0.95264 0.98023 1.69956 1.54383 0.96902 1.35059 0.86144 0.78014 0.77199 0.84617 1.21622 1.21624 1.20625 1.21017 0.93854 0.91516 0.88907 0.94771 1.22226 0.98439 0.99606 1.01066 1.21492 1.01518 0.92458 0.99191 1.21919 1.01148 0.98580 0.95074 0.88768 0.88957 0.90180 0.76241 0.89373 0.90108 0.90917 0.91401 0.90573 0.88449 0.76872 0.91878 0.92098 0.91055 0.95371 0.93654 0.92916 0.92685 0.94533 0.91371 0.91132 0.91004 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 10.30 36.00 0.37 -0.59 16 2 C 0.51 4.53 7.90 -10.98 -0.09 4.45 16 3 O -0.55 -7.22 16.76 5.56 0.09 -7.13 16 4 N -0.72 -5.18 4.23 -53.81 -0.23 -5.40 16 5 C 0.14 1.04 2.78 -67.93 -0.19 0.85 16 6 C -0.13 -0.78 5.61 -26.72 -0.15 -0.93 16 7 C -0.10 -0.80 4.32 -26.73 -0.12 -0.91 16 8 C -0.11 -0.95 2.52 -91.77 -0.23 -1.19 16 9 C 0.51 6.78 7.16 -10.99 -0.08 6.70 16 10 O -0.54 -9.24 15.67 5.56 0.09 -9.15 16 11 N -0.71 -9.67 5.08 -52.03 -0.26 -9.94 16 12 C 0.14 2.37 2.79 -66.09 -0.18 2.19 16 13 H 0.09 1.76 7.33 -51.93 -0.38 1.38 16 14 C -0.15 -2.95 6.79 -24.46 -0.17 -3.12 16 15 C 0.17 4.16 5.42 -2.41 -0.01 4.14 16 16 N -0.59 -14.51 3.13 -162.44 -0.51 -15.01 16 17 C -0.23 -6.11 9.85 -15.06 -0.15 -6.26 16 18 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 19 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 20 N -0.92 -26.49 10.69 55.49 0.59 -25.90 16 21 Si 0.91 21.67 29.56 -169.99 -5.03 16.65 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.16 3.02 3.48 -66.95 -0.23 2.79 16 26 H 0.03 0.65 7.70 -51.93 -0.40 0.25 16 27 C -0.15 -2.84 9.13 37.16 0.34 -2.50 16 28 C -0.11 -0.87 4.94 -26.73 -0.13 -1.00 16 29 C -0.13 -0.96 5.60 -26.74 -0.15 -1.11 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.40 2.32 6.87 -40.82 -0.28 2.04 16 34 H 0.09 0.75 7.58 -51.93 -0.39 0.36 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.57 6.46 -51.93 -0.34 0.24 16 38 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 4.49 7.76 -40.82 -0.32 4.17 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.89 6.94 -51.93 -0.36 1.53 16 44 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.05 8.04 -51.92 -0.42 0.64 16 48 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.60 7.60 -51.93 -0.39 0.20 16 50 H 0.07 0.55 7.56 -51.93 -0.39 0.15 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 404.33 15.07 6.09 6.09 Total: -1.00 -33.50 404.33 -9.55 -43.06 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -9.13 Total: 3.47 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.26 Total: 3.26 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.41 Total: -56.25 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.18 Total: -16.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.50 -9.55 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089077250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.922 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds