Wall clock time and date at job start Tue Mar 31 2020 21:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.78337 * 2 1 4 4 C 1.54330 * 110.71826 * 236.76421 * 2 1 3 5 5 N 1.47026 * 107.26840 * 219.44364 * 4 2 1 6 6 C 1.34780 * 125.64391 * 178.97562 * 5 4 2 7 7 O 1.21276 * 119.99621 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.00219 * 359.97438 * 6 5 4 9 9 C 1.52998 * 109.46913 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.60199 * 55.32847 * 9 8 6 11 11 C 1.53348 * 109.59859 * 175.81265 * 9 8 6 12 12 C 1.53059 * 108.43569 * 187.27098 * 11 9 8 13 13 C 1.50181 * 109.89398 * 311.11603 * 12 11 9 14 14 O 1.21280 * 118.24600 * 197.55976 * 13 12 11 15 15 N 1.33346 * 123.50673 * 17.58231 * 13 12 11 16 16 C 1.45753 * 124.10893 * 357.75314 * 15 13 12 17 17 C 1.47420 * 108.70428 * 358.94103 * 5 4 2 18 18 C 1.54907 * 104.83524 * 24.12518 * 17 5 4 19 19 H 1.09001 * 111.00336 * 81.06484 * 18 17 5 20 20 C 1.52998 * 111.00730 * 204.91485 * 18 17 5 21 21 C 1.53002 * 109.47381 * 293.55114 * 20 18 17 22 22 N 1.46498 * 109.47131 * 180.02562 * 21 20 18 23 23 C 1.36937 * 119.99794 * 179.97438 * 22 21 20 24 24 H 1.07999 * 120.00026 * 359.97438 * 23 22 21 25 25 C 1.38812 * 119.99954 * 179.97438 * 23 22 21 26 26 N 1.31625 * 119.99783 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00199 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47113 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47185 * 120.00012 * 27 25 23 30 30 H 1.48501 * 109.46927 * 240.00125 * 27 25 23 31 31 H 1.08994 * 109.47458 * 181.78342 * 1 2 3 32 32 H 1.09010 * 109.46817 * 301.78723 * 1 2 3 33 33 H 1.09000 * 109.47214 * 61.77702 * 1 2 3 34 34 H 1.08998 * 109.88224 * 100.02684 * 4 2 1 35 35 H 1.08998 * 109.88221 * 338.86076 * 4 2 1 36 36 H 1.09008 * 109.46861 * 300.00115 * 8 6 5 37 37 H 1.08997 * 109.46822 * 59.99853 * 8 6 5 38 38 H 1.08994 * 109.67733 * 307.02021 * 11 9 8 39 39 H 1.08998 * 109.67454 * 67.55780 * 11 9 8 40 40 H 1.09000 * 109.40255 * 190.98772 * 12 11 9 41 41 H 1.09004 * 109.40323 * 71.24361 * 12 11 9 42 42 H 0.97001 * 117.94679 * 177.78326 * 15 13 12 43 43 H 1.09002 * 109.30280 * 258.78470 * 16 15 13 44 44 H 1.09007 * 109.30398 * 139.41159 * 16 15 13 45 45 H 1.08997 * 110.36858 * 142.96748 * 17 5 4 46 46 H 1.08997 * 110.36396 * 265.17736 * 17 5 4 47 47 H 1.09006 * 109.47001 * 53.54847 * 20 18 17 48 48 H 1.08998 * 109.47202 * 173.54560 * 20 18 17 49 49 H 1.09006 * 109.46836 * 299.99834 * 21 20 18 50 50 H 1.08995 * 109.46758 * 59.99235 * 21 20 18 51 51 H 0.97004 * 120.00195 * 359.97438 * 22 21 20 52 52 H 0.97000 * 120.00104 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7912 -1.2074 5 7 3.2444 -1.5507 -0.7391 6 6 3.9922 -2.3836 -1.4900 7 8 4.9382 -2.9602 -0.9966 8 6 3.6527 -2.5983 -2.9425 9 6 4.6492 -3.5821 -3.5590 10 1 4.6577 -4.5053 -2.9796 11 6 4.2454 -3.8835 -5.0073 12 6 5.1457 -5.0016 -5.5382 13 6 6.5835 -4.6832 -5.2437 14 8 7.4413 -5.2777 -5.8616 15 7 6.9676 -3.7822 -4.3388 16 6 6.0476 -2.9634 -3.5592 17 6 3.4632 -1.2499 0.6874 18 6 2.0790 -0.7955 1.2137 19 1 1.4451 -1.6536 1.4374 20 6 2.2278 0.1079 2.4396 21 6 2.8019 -0.7024 3.6035 22 7 2.9439 0.1625 4.7774 23 6 3.4411 -0.3471 5.9472 24 1 3.7282 -1.3866 6.0044 25 6 3.5761 0.4725 7.0593 26 7 3.2257 1.7393 6.9897 27 14 4.2550 -0.2224 8.6548 28 1 4.5710 -1.6620 8.4729 29 1 5.4900 0.5125 9.0289 30 1 3.2432 -0.0703 9.7311 31 1 -0.3634 -1.0271 0.0320 32 1 -0.3633 0.5414 0.8736 33 1 -0.3633 0.4860 -0.9055 34 1 2.3740 -0.1023 -1.9978 35 1 1.3128 -1.4758 -1.5777 36 1 2.6443 -3.0042 -3.0237 37 1 3.7054 -1.6472 -3.4723 38 1 3.2042 -4.2044 -5.0388 39 1 4.3729 -2.9893 -5.6175 40 1 5.0091 -5.0958 -6.6155 41 1 4.8772 -5.9420 -5.0568 42 1 7.9188 -3.6639 -4.1903 43 1 5.9995 -1.9641 -3.9919 44 1 6.4099 -2.8914 -2.5336 45 1 3.7959 -2.1427 1.2167 46 1 4.1945 -0.4493 0.7983 47 1 2.9009 0.9322 2.2038 48 1 1.2518 0.5044 2.7193 49 1 2.1288 -1.5267 3.8393 50 1 3.7778 -1.0989 3.3236 51 1 2.6856 1.0961 4.7261 52 1 3.3203 2.3122 7.7667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104283921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:48 Heat of formation + Delta-G solvation = -84.407689 kcal Electronic energy + Delta-G solvation = -29222.799177 eV Core-core repulsion = 25221.206867 eV Total energy + Delta-G solvation = -4001.592310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.91286 -40.18132 -38.48064 -36.86004 -35.19733 -33.82003 -33.36632 -32.13828 -31.79779 -30.24501 -28.06814 -26.69786 -26.34974 -24.90216 -24.07921 -22.62075 -22.19860 -20.80826 -20.19215 -19.60524 -19.33288 -17.52244 -17.28429 -17.14200 -16.50674 -16.27357 -16.01549 -15.60670 -14.87906 -14.80902 -14.65929 -14.37139 -14.17072 -13.89485 -13.74089 -13.59510 -13.36427 -13.27835 -13.16533 -12.96538 -12.63986 -12.50493 -12.30229 -12.00125 -11.80488 -11.67336 -11.51428 -11.42181 -11.34852 -11.20962 -11.08137 -10.86544 -10.68542 -10.48530 -10.28765 -10.11372 -9.97301 -9.94128 -9.68269 -9.35173 -8.87884 -8.82551 -6.92532 -5.77312 -3.05794 2.34588 2.38902 2.72200 2.98858 3.43220 3.49150 3.51281 4.00970 4.07360 4.15958 4.26129 4.30808 4.37798 4.51959 4.62639 4.64116 4.81711 4.91548 4.95336 4.98883 5.06006 5.11799 5.19999 5.21076 5.25442 5.28119 5.32771 5.36653 5.42001 5.48930 5.56935 5.62201 5.67373 5.71648 5.79119 5.82673 5.90864 5.94227 6.01844 6.10230 6.22817 6.34126 6.35723 6.45068 6.81671 6.85689 7.02942 7.31114 7.70670 7.90614 7.93219 8.41958 9.53066 10.11078 10.45387 11.45721 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.001974 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.337339 B =14180.153008 C =15682.486395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.618 5.618 6 C 0.523 3.477 7 O -0.538 6.538 8 C -0.129 4.129 9 C -0.089 4.089 10 H 0.091 0.909 11 C -0.120 4.120 12 C -0.134 4.134 13 C 0.517 3.483 14 O -0.565 6.565 15 N -0.716 5.716 16 C 0.107 3.893 17 C 0.109 3.891 18 C -0.090 4.090 19 H 0.085 0.915 20 C -0.114 4.114 21 C 0.151 3.849 22 N -0.734 5.734 23 C -0.238 4.238 24 H 0.071 0.929 25 C -0.016 4.016 26 N -0.934 5.934 27 Si 0.907 3.093 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.400 0.600 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 -6.048 -27.794 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.352 5.352 6 C 0.312 3.688 7 O -0.415 6.415 8 C -0.169 4.169 9 C -0.108 4.108 10 H 0.110 0.890 11 C -0.157 4.157 12 C -0.174 4.174 13 C 0.304 3.696 14 O -0.444 6.444 15 N -0.367 5.367 16 C -0.017 4.017 17 C -0.013 4.013 18 C -0.109 4.109 19 H 0.103 0.897 20 C -0.152 4.152 21 C 0.024 3.976 22 N -0.378 5.378 23 C -0.369 4.369 24 H 0.089 0.911 25 C -0.212 4.212 26 N -0.583 5.583 27 Si 0.738 3.262 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.235 0.765 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.499 -6.871 -27.821 29.008 hybrid contribution 0.498 0.245 1.124 1.254 sum -4.001 -6.626 -26.697 27.797 Atomic orbital electron populations 1.21748 0.93638 1.02200 1.02293 1.22297 0.96492 0.99642 0.93614 0.89366 1.22180 0.87615 0.94679 0.97492 1.48576 1.30202 1.44404 1.11979 1.20296 0.82100 0.78187 0.88213 1.90708 1.28691 1.48273 1.73862 1.21666 1.01185 1.01533 0.92545 1.21226 0.93558 0.99838 0.96219 0.89043 1.21750 1.00049 0.98763 0.95183 1.21624 0.91070 1.00744 1.03971 1.20209 0.91933 0.78755 0.78683 1.90762 1.52849 1.50935 1.49872 1.45471 1.10994 1.39962 1.40249 1.21666 0.89515 0.93102 0.97445 1.22412 0.97619 1.01545 0.79708 1.22426 0.95330 0.98755 0.94427 0.89657 1.21679 1.01901 0.98039 0.93582 1.20675 0.96903 0.93250 0.86795 1.42369 1.77590 1.10042 1.07816 1.19289 1.34088 0.94825 0.88700 0.91142 1.24750 1.02327 0.95810 0.98277 1.69670 1.54210 1.04645 1.29791 0.86113 0.78263 0.78019 0.83805 1.20536 1.21846 1.21874 0.92424 0.91573 0.92525 0.91430 0.91254 0.88152 0.88507 0.90112 0.90871 0.88033 0.88084 0.76479 0.92047 0.88264 0.90014 0.90949 0.91642 0.91285 0.96497 0.96313 0.78339 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.13 37.15 0.34 -0.64 16 2 C -0.10 -0.81 3.02 -88.79 -0.27 -1.08 16 3 H 0.09 0.72 8.04 -51.93 -0.42 0.31 16 4 C 0.10 0.69 6.08 -3.06 -0.02 0.68 16 5 N -0.62 -5.95 3.33 -170.52 -0.57 -6.52 16 6 C 0.52 5.17 7.60 -10.98 -0.08 5.08 16 7 O -0.54 -7.37 14.26 5.56 0.08 -7.29 16 8 C -0.13 -0.70 4.37 -27.88 -0.12 -0.82 16 9 C -0.09 -0.55 1.90 -90.48 -0.17 -0.72 16 10 H 0.09 0.72 7.95 -51.93 -0.41 0.31 16 11 C -0.12 -0.52 5.32 -26.52 -0.14 -0.66 16 12 C -0.13 -0.84 6.03 -28.10 -0.17 -1.01 16 13 C 0.52 5.16 7.71 -11.87 -0.09 5.07 16 14 O -0.56 -8.07 17.78 5.56 0.10 -7.97 16 15 N -0.72 -6.09 5.45 -61.39 -0.33 -6.43 16 16 C 0.11 0.78 6.10 -4.49 -0.03 0.76 16 17 C 0.11 1.30 5.56 -2.53 -0.01 1.28 16 18 C -0.09 -0.98 2.52 -88.47 -0.22 -1.20 16 19 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 20 C -0.11 -1.63 4.85 -26.73 -0.13 -1.76 16 21 C 0.15 2.94 6.11 -4.04 -0.02 2.91 16 22 N -0.73 -18.50 5.60 -59.91 -0.34 -18.84 16 23 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 24 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 25 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 26 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 27 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 31 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 32 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.37 7.82 -51.93 -0.41 -0.04 16 36 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.10 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.28 8.13 -51.93 -0.42 -0.14 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.40 3.27 8.80 -40.82 -0.36 2.91 16 43 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 44 H 0.10 0.94 6.17 -51.93 -0.32 0.62 16 45 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 46 H 0.07 0.92 8.01 -51.93 -0.42 0.51 16 47 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.02 0.38 7.46 -51.93 -0.39 -0.01 16 51 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 52 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 410.06 15.07 6.18 6.18 Total: -1.00 -35.75 410.06 -9.89 -45.64 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -9.32 Total: 4.77 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.39 Total: 0.47 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.51 Total: -59.32 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.18 Total: -15.26 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.75 -9.89 -45.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104283921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.766 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds