Wall clock time and date at job start Tue Mar 31 2020 21:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.30418 * 2 1 4 4 C 1.54388 * 110.34560 * 237.70872 * 2 1 3 5 5 N 1.48142 * 104.62164 * 264.99751 * 4 2 1 6 6 C 1.34774 * 127.83881 * 140.40869 * 5 4 2 7 7 O 1.21288 * 119.99863 * 180.02562 * 6 5 4 8 8 C 1.50692 * 120.00249 * 0.03407 * 6 5 4 9 9 C 1.52996 * 109.47634 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.43407 * 52.45782 * 9 8 6 11 11 C 1.54627 * 110.48961 * 174.99626 * 9 8 6 12 12 C 1.54481 * 101.76244 * 93.87980 * 11 9 8 13 13 N 1.46761 * 105.47519 * 25.41769 * 12 11 9 14 14 C 1.46500 * 124.35092 * 162.97983 * 13 12 11 15 15 C 1.34420 * 111.29967 * 342.98124 * 13 12 11 16 16 O 1.21280 * 124.94190 * 180.44278 * 15 13 12 17 17 C 1.48150 * 104.32221 * 320.41666 * 5 4 2 18 18 C 1.54287 * 110.34228 * 122.17153 * 2 1 3 19 19 H 1.09005 * 110.34229 * 359.90073 * 18 2 1 20 20 C 1.52997 * 110.34642 * 237.74444 * 18 2 1 21 21 C 1.53000 * 109.47060 * 175.00176 * 20 18 2 22 22 N 1.46499 * 109.46840 * 180.02562 * 21 20 18 23 23 C 1.36936 * 120.00002 * 179.97438 * 22 21 20 24 24 H 1.08004 * 120.00140 * 359.97438 * 23 22 21 25 25 C 1.38814 * 120.00175 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00164 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00095 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47021 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47345 * 119.99599 * 27 25 23 30 30 H 1.48503 * 109.46749 * 239.99856 * 27 25 23 31 31 H 1.09000 * 109.47431 * 297.82378 * 1 2 3 32 32 H 1.09003 * 109.46774 * 57.83056 * 1 2 3 33 33 H 1.09003 * 109.47148 * 177.82437 * 1 2 3 34 34 H 1.09000 * 110.40631 * 23.78433 * 4 2 1 35 35 H 1.09001 * 110.40513 * 146.21016 * 4 2 1 36 36 H 1.09003 * 109.47281 * 299.99536 * 8 6 5 37 37 H 1.08999 * 109.47612 * 59.99177 * 8 6 5 38 38 H 1.09003 * 110.97032 * 211.99699 * 11 9 8 39 39 H 1.08992 * 110.97034 * 335.76276 * 11 9 8 40 40 H 1.09004 * 110.24273 * 144.41681 * 12 11 9 41 41 H 1.08998 * 110.24811 * 266.32511 * 12 11 9 42 42 H 1.09010 * 109.46709 * 90.00148 * 14 13 12 43 43 H 1.08999 * 109.47402 * 209.99906 * 14 13 12 44 44 H 1.08996 * 109.47194 * 330.00411 * 14 13 12 45 45 H 1.09006 * 110.40392 * 280.79695 * 17 5 4 46 46 H 1.09000 * 110.40811 * 158.36832 * 17 5 4 47 47 H 1.09002 * 109.47153 * 54.99857 * 20 18 2 48 48 H 1.09001 * 109.46832 * 295.00047 * 20 18 2 49 49 H 1.09001 * 109.47194 * 299.99650 * 21 20 18 50 50 H 1.08992 * 109.47399 * 59.99823 * 21 20 18 51 51 H 0.97005 * 120.00448 * 359.97438 * 22 21 20 52 52 H 0.96993 * 120.00311 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3140 -2.1446 -0.7205 6 6 2.0773 -3.3119 -1.3512 7 8 2.3357 -4.3615 -0.8012 8 6 1.4921 -3.3129 -2.7398 9 6 1.3256 -4.7553 -3.2221 10 1 0.7705 -5.3402 -2.4886 11 6 0.6114 -4.7885 -4.5932 12 6 1.8073 -4.8183 -5.5706 13 7 2.9169 -5.4098 -4.8138 14 6 4.1315 -5.9594 -5.4212 15 6 2.6756 -5.3825 -3.4917 16 8 3.4306 -5.7994 -2.6391 17 6 2.8801 -1.9416 0.6334 18 6 2.0663 -0.7703 1.2245 19 1 1.2397 -1.1471 1.8270 20 6 2.9691 0.1327 2.0674 21 6 3.3887 -0.6089 3.3382 22 7 4.2526 0.2560 4.1455 23 6 4.7537 -0.1967 5.3367 24 1 4.5117 -1.1913 5.6813 25 6 5.5719 0.6230 6.1020 26 7 5.8665 1.8352 5.6824 27 14 6.2560 0.0051 7.7267 28 1 5.7800 -1.3805 7.9693 29 1 7.7401 0.0172 7.6756 30 1 5.7913 0.8875 8.8270 31 1 -0.3634 0.4797 0.9088 32 1 -0.3633 0.5472 -0.8699 33 1 -0.3633 -1.0270 -0.0390 34 1 1.3224 -0.7890 -2.0198 35 1 2.9950 -0.3257 -1.5789 36 1 0.5199 -2.8201 -2.7248 37 1 2.1596 -2.7788 -3.4160 38 1 0.0026 -5.6870 -4.6942 39 1 0.0090 -3.8923 -4.7410 40 1 1.5707 -5.4354 -6.4374 41 1 2.0615 -3.8066 -5.8866 42 1 4.8816 -5.1733 -5.5089 43 1 4.5191 -6.7632 -4.7952 44 1 3.8976 -6.3506 -6.4113 45 1 3.9354 -1.6765 0.5683 46 1 2.7494 -2.8387 1.2385 47 1 2.4264 1.0386 2.3377 48 1 3.8560 0.3985 1.4922 49 1 2.5018 -0.8746 3.9134 50 1 3.9313 -1.5146 3.0679 51 1 4.4698 1.1495 3.8362 52 1 6.4385 2.4078 6.2169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104332421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:58 Heat of formation + Delta-G solvation = -59.926381 kcal Electronic energy + Delta-G solvation = -29695.189803 eV Core-core repulsion = 25694.659082 eV Total energy + Delta-G solvation = -4000.530721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.03736 -39.94143 -37.98872 -36.61170 -35.07721 -34.05671 -33.07182 -31.98624 -30.52284 -29.82526 -27.44958 -27.07297 -26.66194 -25.63063 -24.02865 -22.55716 -21.82623 -20.74627 -19.90011 -19.85455 -19.17024 -17.39255 -17.03125 -16.71876 -16.56939 -16.20478 -15.58705 -15.39485 -14.73595 -14.61076 -14.58188 -14.05792 -13.87819 -13.65984 -13.52836 -13.30929 -13.26464 -13.08726 -13.05622 -12.88352 -12.72063 -12.67096 -12.40000 -12.13263 -12.01309 -11.74537 -11.65558 -11.35012 -11.26969 -11.17552 -10.98471 -10.80524 -10.49300 -10.38937 -10.26456 -9.92614 -9.88562 -9.67558 -9.61491 -9.02009 -8.82516 -8.67365 -6.86578 -5.71998 -3.00091 2.42511 2.64940 2.70853 2.89299 3.47336 3.53133 3.55549 3.91300 3.99504 4.25630 4.33196 4.45420 4.55981 4.62359 4.68332 4.73785 4.83638 4.85918 4.98214 4.99901 5.06904 5.11350 5.17574 5.28485 5.31466 5.33831 5.39190 5.40586 5.42447 5.51575 5.60214 5.62488 5.64812 5.77328 5.83052 5.92416 5.99157 6.04297 6.13147 6.20944 6.24833 6.32507 6.42864 6.51083 6.81857 6.90610 6.94451 7.56379 7.76234 8.04751 8.20384 8.47471 9.58443 10.17038 10.51552 11.51190 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.002116 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.021146 B =13227.263455 C =14305.450087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.089 0.911 4 C 0.104 3.896 5 N -0.626 5.626 6 C 0.521 3.479 7 O -0.511 6.511 8 C -0.118 4.118 9 C -0.108 4.108 10 H 0.114 0.886 11 C -0.130 4.130 12 C 0.103 3.897 13 N -0.634 5.634 14 C 0.097 3.903 15 C 0.515 3.485 16 O -0.494 6.494 17 C 0.111 3.889 18 C -0.092 4.092 19 H 0.082 0.918 20 C -0.116 4.116 21 C 0.151 3.849 22 N -0.734 5.734 23 C -0.236 4.236 24 H 0.071 0.929 25 C -0.017 4.017 26 N -0.935 5.935 27 Si 0.907 3.093 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.966 -8.368 -30.304 34.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.108 0.892 4 C -0.019 4.019 5 N -0.361 5.361 6 C 0.309 3.691 7 O -0.385 6.385 8 C -0.159 4.159 9 C -0.131 4.131 10 H 0.132 0.868 11 C -0.168 4.168 12 C -0.020 4.020 13 N -0.371 5.371 14 C -0.045 4.045 15 C 0.301 3.699 16 O -0.365 6.365 17 C -0.011 4.011 18 C -0.112 4.112 19 H 0.100 0.900 20 C -0.154 4.154 21 C 0.023 3.977 22 N -0.378 5.378 23 C -0.367 4.367 24 H 0.089 0.911 25 C -0.212 4.212 26 N -0.584 5.584 27 Si 0.738 3.262 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.216 0.784 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.312 -9.461 -29.483 34.112 hybrid contribution 0.569 0.213 0.672 0.907 sum -13.743 -9.248 -28.811 33.233 Atomic orbital electron populations 1.21835 0.94451 1.01681 1.01918 1.22196 0.96213 0.99773 0.94205 0.89229 1.22485 1.00479 0.82081 0.96872 1.49012 1.63789 1.05250 1.18068 1.20108 0.78986 0.82432 0.87590 1.90847 1.50865 1.29869 1.66928 1.21494 1.03260 0.96406 0.94700 1.21738 0.95843 0.96806 0.98667 0.86756 1.22707 0.96854 1.04297 0.92910 1.22061 0.86085 0.98774 0.95109 1.48229 1.19801 1.61697 1.07363 1.21506 0.85714 0.98963 0.98273 1.20736 0.88425 0.78849 0.81886 1.90815 1.51727 1.45967 1.48033 1.22475 0.97391 0.98942 0.82315 1.22157 0.98456 0.95060 0.95480 0.89987 1.21808 0.98642 0.98264 0.96687 1.20688 0.93441 0.93524 0.90028 1.42378 1.57536 1.15899 1.22025 1.19305 1.22862 0.98537 0.96012 0.91137 1.24745 1.00942 0.96348 0.99214 1.69668 1.41673 1.08057 1.39027 0.86110 0.78562 0.77809 0.83726 1.20530 1.21876 1.21907 0.92067 0.92746 0.92789 0.90584 0.91040 0.87773 0.88964 0.89506 0.88817 0.90411 0.91192 0.92755 0.90727 0.91209 0.90747 0.89881 0.91486 0.91714 0.96465 0.96285 0.78363 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.90 37.16 0.33 -0.83 16 2 C -0.10 -1.00 3.31 -89.22 -0.30 -1.29 16 3 H 0.09 0.82 7.71 -51.93 -0.40 0.42 16 4 C 0.10 0.91 6.46 -2.41 -0.02 0.90 16 5 N -0.63 -7.64 3.32 -169.31 -0.56 -8.20 16 6 C 0.52 6.92 7.72 -10.99 -0.08 6.84 16 7 O -0.51 -9.30 14.26 -15.01 -0.21 -9.51 16 8 C -0.12 -0.95 4.09 -27.89 -0.11 -1.07 16 9 C -0.11 -0.93 2.54 -90.63 -0.23 -1.16 16 10 H 0.11 1.14 7.90 -51.93 -0.41 0.72 16 11 C -0.13 -0.52 6.71 -25.10 -0.17 -0.69 16 12 C 0.10 0.45 7.35 -3.12 -0.02 0.43 16 13 N -0.63 -5.38 3.33 -180.29 -0.60 -5.98 16 14 C 0.10 0.68 10.96 59.85 0.66 1.34 16 15 C 0.52 6.30 7.02 -10.86 -0.08 6.22 16 16 O -0.49 -8.79 15.79 -15.00 -0.24 -9.03 16 17 C 0.11 1.57 5.87 -2.41 -0.01 1.55 16 18 C -0.09 -1.16 2.71 -89.22 -0.24 -1.40 16 19 H 0.08 1.08 7.71 -51.93 -0.40 0.67 16 20 C -0.12 -1.81 4.51 -26.73 -0.12 -1.93 16 21 C 0.15 3.11 6.13 -4.04 -0.02 3.09 16 22 N -0.73 -19.24 5.60 -59.91 -0.34 -19.57 16 23 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 24 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 25 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 26 N -0.94 -28.93 13.06 55.49 0.72 -28.20 16 27 Si 0.91 23.12 29.55 -169.99 -5.02 18.09 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.46 7.02 -51.93 -0.36 0.10 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.52 7.91 -51.93 -0.41 0.11 16 37 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.16 7.87 -51.93 -0.41 -0.25 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 43 H 0.07 0.64 7.93 -51.93 -0.41 0.23 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 1.11 7.75 -51.93 -0.40 0.71 16 46 H 0.08 1.34 7.88 -51.93 -0.41 0.93 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.02 0.41 7.59 -51.93 -0.39 0.01 16 51 H 0.38 10.41 7.67 -40.82 -0.31 10.09 16 52 H 0.25 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 412.75 15.07 6.22 6.22 Total: -1.00 -38.89 412.75 -10.05 -48.95 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -9.36 Total: 2.87 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.67 Total: 4.37 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.77 Total: -61.96 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.45 Total: -18.54 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -38.89 -10.05 -48.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104332421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.981 kcal (2) G-P(sol) polarization free energy of solvation -38.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds