Wall clock time and date at job start Tue Mar 31 2020 20:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.45253 * 2 1 4 4 C 1.53037 * 109.46253 * 119.96872 * 2 1 3 5 5 C 1.53196 * 109.31040 * 58.65563 * 4 2 1 6 6 N 1.46920 * 108.77435 * 54.63686 * 5 4 2 7 7 C 1.34778 * 120.63229 * 126.37018 * 6 5 4 8 8 O 1.21280 * 120.00314 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99794 * 0.02562 * 7 6 5 10 10 C 1.53001 * 109.47091 * 180.02562 * 9 7 6 11 11 C 1.53002 * 117.49739 * 243.61897 * 10 9 7 12 12 C 1.52998 * 60.00210 * 252.50973 * 11 10 9 13 13 C 1.46926 * 118.73951 * 306.38547 * 6 5 4 14 14 C 1.53040 * 109.45812 * 240.04183 * 2 1 3 15 15 H 1.09004 * 109.52641 * 181.38128 * 14 2 1 16 16 C 1.52998 * 109.50171 * 61.29190 * 14 2 1 17 17 N 1.46906 * 109.46981 * 175.16169 * 16 14 2 18 18 C 1.46903 * 110.99703 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47146 * 180.02562 * 18 17 16 20 20 O 1.21297 * 119.99470 * 0.02562 * 19 18 17 21 21 N 1.34772 * 119.99962 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00019 * 180.02562 * 21 19 18 23 23 H 1.08006 * 119.99919 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00337 * 179.97438 * 22 21 19 25 25 N 1.31405 * 119.99893 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99784 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47081 * 89.99834 * 26 24 22 28 28 H 1.48496 * 109.47112 * 209.99838 * 26 24 22 29 29 H 1.48502 * 109.46953 * 329.99820 * 26 24 22 30 30 H 1.09003 * 109.46780 * 300.03310 * 1 2 3 31 31 H 1.09005 * 109.47444 * 60.02676 * 1 2 3 32 32 H 1.09002 * 109.47200 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.50017 * 298.69971 * 4 2 1 34 34 H 1.09004 * 109.49998 * 178.60568 * 4 2 1 35 35 H 1.08998 * 109.58545 * 174.42116 * 5 4 2 36 36 H 1.08999 * 109.58713 * 294.84595 * 5 4 2 37 37 H 1.09001 * 109.47247 * 299.99486 * 9 7 6 38 38 H 1.08995 * 109.47466 * 59.99868 * 9 7 6 39 39 H 1.09002 * 115.55375 * 29.32401 * 10 9 7 40 40 H 1.08999 * 117.49806 * 0.02562 * 11 10 9 41 41 H 1.09003 * 117.50196 * 145.01475 * 11 10 9 42 42 H 1.08999 * 117.49633 * 252.51464 * 12 11 10 43 43 H 1.08996 * 117.52168 * 107.47593 * 12 11 10 44 44 H 1.08998 * 109.58617 * 173.39731 * 13 6 5 45 45 H 1.08996 * 109.58899 * 293.68332 * 13 6 5 46 46 H 1.08996 * 109.47266 * 295.16488 * 16 14 2 47 47 H 1.08997 * 109.46683 * 55.16377 * 16 14 2 48 48 H 1.00898 * 111.00267 * 303.95680 * 17 16 14 49 49 H 1.08997 * 109.46980 * 300.00083 * 18 17 16 50 50 H 1.09002 * 109.47225 * 60.00152 * 18 17 16 51 51 H 0.96993 * 120.00279 * 359.97438 * 21 19 18 52 52 H 0.97004 * 119.99670 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 1.4996 -2.1542 1.2641 6 7 1.8625 -2.8088 -0.0002 7 6 2.5164 -3.9873 -0.0003 8 8 2.8101 -4.5178 -1.0507 9 6 2.8817 -4.6465 1.3047 10 6 3.6121 -5.9614 1.0250 11 6 2.9397 -7.2554 1.4881 12 6 4.1722 -6.7276 2.2252 13 6 1.4995 -2.1541 -1.2644 14 6 2.0398 -0.7206 -1.2502 15 1 3.1295 -0.7427 -1.2390 16 6 1.5567 0.0196 -2.4990 17 7 2.1408 -0.6037 -3.6943 18 6 1.6985 0.0828 -4.9154 19 6 2.3160 -0.5833 -6.1179 20 8 3.0517 -1.5366 -5.9719 21 7 2.0507 -0.1199 -7.3553 22 6 2.6120 -0.7263 -8.4493 23 1 3.2672 -1.5751 -8.3194 24 6 2.3381 -0.2489 -9.7251 25 7 2.8766 -0.8298 -10.7736 26 14 1.2056 1.2196 -9.9497 27 1 2.0057 2.4704 -9.9230 28 1 0.5039 1.1086 -11.2537 29 1 0.2070 1.2471 -8.8509 30 1 -0.3633 0.5144 0.8897 31 1 -0.3634 0.5134 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6959 -0.1935 2.1398 34 1 3.1296 -0.7428 1.2382 35 1 1.9382 -2.7019 2.0982 36 1 0.4146 -2.1348 1.3672 37 1 3.5321 -3.9846 1.8766 38 1 1.9757 -4.8481 1.8761 39 1 4.1819 -5.9945 0.0964 40 1 1.9767 -7.1699 1.9916 41 1 3.0668 -8.1400 0.8640 42 1 5.1102 -7.2649 2.0859 43 1 4.0207 -6.2946 3.2139 44 1 1.9381 -2.7016 -2.0986 45 1 0.4147 -2.1369 -1.3687 46 1 0.4696 -0.0342 -2.5556 47 1 1.8665 1.0632 -2.4453 48 1 3.1479 -0.6242 -3.6359 49 1 0.6123 0.0298 -4.9889 50 1 2.0096 1.1269 -4.8782 51 1 1.4621 0.6421 -7.4720 52 1 2.6857 -0.4963 -11.6643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132597821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:10 Heat of formation + Delta-G solvation = -49.154522 kcal Electronic energy + Delta-G solvation = -29540.659323 eV Core-core repulsion = 25540.595705 eV Total energy + Delta-G solvation = -4000.063618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.67909 -38.81976 -38.29686 -37.12203 -35.64640 -34.01733 -33.65242 -31.78130 -31.53709 -29.87259 -28.32569 -26.96512 -25.09322 -24.88556 -23.42491 -22.63895 -21.82115 -21.31509 -19.82003 -19.29333 -18.49913 -18.18779 -17.35798 -16.47071 -16.09081 -15.87805 -15.70303 -15.16926 -15.09003 -15.03684 -14.77222 -14.34958 -14.02714 -13.88527 -13.75491 -13.59538 -13.17380 -13.09390 -12.75586 -12.57134 -12.47255 -12.31547 -12.12949 -11.96133 -11.78819 -11.69115 -11.66015 -11.46918 -11.34491 -11.13012 -10.99423 -10.64575 -10.59661 -10.56760 -10.50859 -10.28269 -9.93439 -9.75636 -9.52972 -8.70665 -8.52947 -8.14979 -8.07986 -6.26810 -3.77989 2.57538 2.82891 3.05241 3.08868 3.17149 3.54910 3.79487 4.04373 4.13706 4.25866 4.34199 4.43756 4.49885 4.62881 4.65260 4.72925 4.83367 4.90210 4.97718 5.03057 5.09860 5.15321 5.20988 5.26157 5.26237 5.30068 5.34708 5.36538 5.38979 5.49156 5.55653 5.62847 5.64544 5.68715 5.72232 5.75513 5.84142 5.84513 5.86944 5.95678 5.98841 6.08147 6.15453 6.27940 6.43052 7.13231 7.30641 7.60680 7.63128 8.14075 8.19574 8.64591 8.99864 9.47070 9.88174 10.86484 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013539 B = 0.002291 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.533427 B =12216.321531 C =13971.677175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.129 4.129 5 C 0.105 3.895 6 N -0.616 5.616 7 C 0.512 3.488 8 O -0.526 6.526 9 C -0.108 4.108 10 C -0.142 4.142 11 C -0.178 4.178 12 C -0.181 4.181 13 C 0.122 3.878 14 C -0.092 4.092 15 H 0.074 0.926 16 C 0.065 3.935 17 N -0.668 5.668 18 C 0.049 3.951 19 C 0.450 3.550 20 O -0.561 6.561 21 N -0.592 5.592 22 C -0.303 4.303 23 H 0.120 0.880 24 C 0.040 3.960 25 N -0.882 5.882 26 Si 0.880 3.120 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.030 0.970 48 H 0.351 0.649 49 H 0.086 0.914 50 H 0.043 0.957 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 1.267 31.710 32.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.168 4.168 5 C -0.019 4.019 6 N -0.350 5.350 7 C 0.300 3.700 8 O -0.401 6.401 9 C -0.147 4.147 10 C -0.160 4.160 11 C -0.215 4.215 12 C -0.218 4.218 13 C 0.000 4.000 14 C -0.112 4.112 15 H 0.092 0.908 16 C -0.065 4.065 17 N -0.301 5.301 18 C -0.084 4.084 19 C 0.235 3.765 20 O -0.442 6.442 21 N -0.232 5.232 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.163 4.163 25 N -0.523 5.523 26 Si 0.707 3.293 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.048 0.952 48 H 0.170 0.830 49 H 0.105 0.895 50 H 0.061 0.939 51 H 0.202 0.798 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.290 -0.195 30.945 31.395 hybrid contribution -0.486 2.179 -0.289 2.251 sum -5.776 1.984 30.656 31.259 Atomic orbital electron populations 1.22001 0.95023 1.02260 1.01864 1.21102 0.96165 0.99260 0.94064 0.90908 1.21937 1.01252 0.95286 0.98277 1.21762 1.00388 0.93574 0.86129 1.48169 1.57993 1.21394 1.07431 1.20571 0.77360 0.80584 0.91476 1.90763 1.52940 1.62925 1.33492 1.21236 1.01319 0.96388 0.95803 1.22100 1.03339 0.90982 0.99589 1.23024 0.96759 0.97992 1.03719 1.22990 0.98168 1.04306 0.96355 1.21643 0.99717 0.92272 0.86341 1.21492 1.00870 0.95127 0.93680 0.90753 1.22020 1.00193 0.95071 0.89235 1.60069 1.15385 1.54798 0.99822 1.21694 1.00888 0.95427 0.90378 1.19735 0.86099 0.86982 0.83654 1.90590 1.39525 1.28779 1.85334 1.42204 1.44544 1.30376 1.06086 1.19442 1.26415 1.14577 0.82780 0.86286 1.25040 0.97905 0.98150 0.95176 1.69625 1.43551 1.40668 0.98409 0.86664 0.81005 0.83092 0.78575 1.19718 1.20205 1.19501 0.92776 0.92159 0.92106 0.90666 0.91390 0.90016 0.91106 0.88718 0.89077 0.86219 0.88954 0.88670 0.88662 0.88903 0.87300 0.91605 0.90681 0.95205 0.82962 0.89548 0.93870 0.79753 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.12 37.16 0.30 -0.72 16 2 C -0.09 -0.63 2.71 -90.58 -0.25 -0.87 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -0.76 5.63 -26.61 -0.15 -0.91 16 5 C 0.10 0.66 5.87 -3.71 -0.02 0.64 16 6 N -0.62 -6.30 2.97 -172.77 -0.51 -6.81 16 7 C 0.51 6.26 7.70 -10.99 -0.08 6.18 16 8 O -0.53 -9.11 14.98 5.56 0.08 -9.03 16 9 C -0.11 -0.88 4.33 -27.88 -0.12 -1.00 16 10 C -0.14 -1.34 5.41 -90.62 -0.49 -1.83 16 11 C -0.18 -1.45 10.18 -26.73 -0.27 -1.73 16 12 C -0.18 -1.30 10.25 -26.73 -0.27 -1.58 16 13 C 0.12 1.46 5.06 -3.71 -0.02 1.45 16 14 C -0.09 -0.93 2.26 -90.50 -0.20 -1.14 16 15 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 16 C 0.06 0.73 4.62 -3.82 -0.02 0.71 16 17 N -0.67 -10.50 5.69 -115.05 -0.65 -11.16 16 18 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 19 C 0.45 10.52 7.82 -10.99 -0.09 10.43 16 20 O -0.56 -15.66 15.78 5.54 0.09 -15.57 16 21 N -0.59 -14.47 5.09 -10.96 -0.06 -14.52 16 22 C -0.30 -8.80 10.16 -14.93 -0.15 -8.95 16 23 H 0.12 3.96 7.39 -52.48 -0.39 3.57 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -26.30 13.96 55.50 0.77 -25.52 16 26 Si 0.88 19.71 27.74 -169.99 -4.71 14.99 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 32 H 0.06 0.43 4.98 -51.93 -0.26 0.17 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.36 5.93 -51.93 -0.31 0.05 16 36 H 0.07 0.40 6.69 -51.93 -0.35 0.05 16 37 H 0.09 0.59 7.69 -51.93 -0.40 0.19 16 38 H 0.09 0.57 7.68 -51.93 -0.40 0.17 16 39 H 0.12 1.45 7.31 -51.93 -0.38 1.07 16 40 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.11 1.79 6.78 -51.93 -0.35 1.44 16 45 H 0.07 0.75 6.70 -51.93 -0.35 0.41 16 46 H 0.07 0.80 6.72 -51.93 -0.35 0.45 16 47 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.35 5.88 8.43 -39.29 -0.33 5.54 16 49 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 50 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 52 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -35.77 403.25 -9.55 -45.32 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -8.67 Total: 13.74 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.96 Total: 2.49 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.45 Total: -58.01 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.17 Total: -24.60 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 14.99 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.77 -9.55 -45.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132597821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.830 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds