Wall clock time and date at job start Tue Mar 31 2020 20:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.44889 * 2 1 4 4 C 1.53033 * 109.45915 * 240.02959 * 2 1 3 5 5 C 1.53192 * 109.31270 * 301.34251 * 4 2 1 6 6 N 1.46926 * 108.77820 * 305.36633 * 5 4 2 7 7 C 1.34772 * 120.62994 * 233.62963 * 6 5 4 8 8 O 1.21285 * 120.00006 * 180.02562 * 7 6 5 9 9 C 1.50702 * 120.00175 * 359.97438 * 7 6 5 10 10 C 1.52999 * 109.47036 * 180.02562 * 9 7 6 11 11 N 1.46494 * 109.47059 * 180.02562 * 10 9 7 12 12 C 1.46762 * 124.35062 * 89.99971 * 11 10 9 13 13 C 1.54483 * 105.47464 * 197.01870 * 12 11 10 14 14 C 1.54632 * 101.76229 * 334.57816 * 13 12 11 15 15 C 1.34424 * 124.35245 * 269.69695 * 11 10 9 16 16 O 1.21284 * 124.93668 * 359.57627 * 15 11 10 17 17 C 1.46927 * 118.73580 * 53.60911 * 6 5 4 18 18 C 1.53041 * 109.45943 * 119.96121 * 2 1 3 19 19 H 1.09002 * 109.50075 * 178.60589 * 18 2 1 20 20 C 1.53001 * 109.52290 * 298.68761 * 18 2 1 21 21 N 1.46506 * 109.46791 * 184.85281 * 20 18 2 22 22 C 1.36944 * 119.99757 * 179.97438 * 21 20 18 23 23 H 1.07998 * 119.99856 * 359.97438 * 22 21 20 24 24 C 1.38804 * 120.00019 * 180.02562 * 22 21 20 25 25 N 1.31626 * 120.00078 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00421 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47132 * 89.99471 * 26 24 22 28 28 H 1.48497 * 109.47483 * 210.00102 * 26 24 22 29 29 H 1.48506 * 109.46850 * 329.99883 * 26 24 22 30 30 H 1.09000 * 109.46981 * 300.03818 * 1 2 3 31 31 H 1.09002 * 109.46949 * 60.03832 * 1 2 3 32 32 H 1.08999 * 109.47117 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49457 * 181.39594 * 4 2 1 34 34 H 1.08995 * 109.50116 * 61.29764 * 4 2 1 35 35 H 1.09006 * 109.58809 * 185.57967 * 5 4 2 36 36 H 1.09002 * 109.58657 * 65.15954 * 5 4 2 37 37 H 1.08997 * 109.46858 * 299.99583 * 9 7 6 38 38 H 1.08989 * 109.47225 * 60.00023 * 9 7 6 39 39 H 1.09003 * 109.47101 * 299.99816 * 10 9 7 40 40 H 1.09001 * 109.47608 * 59.99930 * 10 9 7 41 41 H 1.09003 * 110.24715 * 316.01467 * 12 11 10 42 42 H 1.09007 * 110.24879 * 77.93207 * 12 11 10 43 43 H 1.08992 * 110.97022 * 92.70022 * 13 12 11 44 44 H 1.09003 * 110.97064 * 216.43031 * 13 12 11 45 45 H 1.09009 * 110.48350 * 143.47701 * 14 13 12 46 46 H 1.08996 * 110.49166 * 266.11726 * 14 13 12 47 47 H 1.08997 * 109.58859 * 66.17990 * 17 6 5 48 48 H 1.09001 * 109.58530 * 186.46228 * 17 6 5 49 49 H 1.08992 * 109.47207 * 304.85203 * 20 18 2 50 50 H 1.09000 * 109.46940 * 64.85762 * 20 18 2 51 51 H 0.96990 * 120.00248 * 0.02562 * 21 20 18 52 52 H 0.96994 * 120.00058 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 1.4996 -2.1542 -1.2640 6 7 1.8625 -2.8089 0.0003 7 6 2.5164 -3.9874 0.0003 8 8 2.8100 -4.5179 1.0507 9 6 2.8817 -4.6465 -1.3047 10 6 3.6109 -5.9621 -1.0250 11 7 3.9666 -6.6026 -2.2936 12 6 5.2273 -6.3771 -3.0103 13 6 4.9813 -6.8870 -4.4476 14 6 3.8572 -7.9254 -4.2256 15 6 3.1826 -7.4767 -2.9480 16 8 2.0920 -7.8494 -2.5703 17 6 1.4995 -2.1540 1.2645 18 6 2.0399 -0.7206 1.2501 19 1 3.1296 -0.7427 1.2384 20 6 1.5575 0.0194 2.4994 21 7 2.1406 -0.6025 3.6909 22 6 1.8500 -0.1064 4.9338 23 1 1.1915 0.7435 5.0356 24 6 2.4028 -0.6951 6.0627 25 7 3.2059 -1.7306 5.9386 26 14 2.0072 -0.0181 7.7581 27 1 0.8032 -0.7015 8.2955 28 1 3.1577 -0.2549 8.6666 29 1 1.7460 1.4405 7.6600 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8904 32 1 -0.3633 -1.0277 0.0005 33 1 3.1296 -0.7429 -1.2381 34 1 1.6958 -0.1936 -2.1398 35 1 1.9382 -2.7020 -2.0981 36 1 0.4146 -2.1348 -1.3672 37 1 1.9756 -4.8482 -1.8760 38 1 3.5320 -3.9847 -1.8765 39 1 4.5170 -5.7609 -0.4535 40 1 2.9603 -6.6239 -0.4533 41 1 5.4689 -5.3143 -3.0234 42 1 6.0338 -6.9410 -2.5415 43 1 4.6432 -6.0787 -5.0958 44 1 5.8759 -7.3605 -4.8521 45 1 3.1533 -7.9094 -5.0578 46 1 4.2784 -8.9228 -4.1002 47 1 0.4146 -2.1346 1.3676 48 1 1.9361 -2.7030 2.0989 49 1 1.8673 1.0630 2.4458 50 1 0.4703 -0.0345 2.5565 51 1 2.7329 -1.3650 3.5994 52 1 3.5919 -2.1423 6.7275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133333339.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:49 Heat of formation + Delta-G solvation = -64.324188 kcal Electronic energy + Delta-G solvation = -30147.718426 eV Core-core repulsion = 26146.997002 eV Total energy + Delta-G solvation = -4000.721424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.76295 -40.22131 -38.15101 -36.67349 -34.93706 -34.05347 -33.48836 -31.87248 -30.47230 -29.65118 -27.92144 -27.62447 -25.91052 -24.88833 -23.72787 -23.09127 -22.25852 -21.18419 -19.80249 -19.44676 -18.15518 -17.49711 -17.01725 -16.91882 -16.29251 -16.04251 -15.71976 -15.28434 -14.98165 -14.88389 -14.38534 -14.12922 -13.98525 -13.92344 -13.63176 -13.51730 -13.30661 -13.00417 -12.97209 -12.77353 -12.63711 -12.40304 -12.36291 -11.92130 -11.85053 -11.63953 -11.45662 -11.31253 -11.21705 -11.06464 -10.88386 -10.77842 -10.61530 -10.27208 -10.16453 -10.05668 -9.94273 -9.66731 -9.54596 -9.02770 -8.81668 -8.41960 -6.85410 -5.68738 -2.98446 2.30396 2.61734 2.74032 3.17936 3.47985 3.52393 3.54597 3.98667 4.05963 4.37579 4.51229 4.61032 4.63368 4.67408 4.75775 4.79459 4.86509 4.93125 5.08148 5.10996 5.18035 5.22264 5.25860 5.28780 5.35118 5.38157 5.51548 5.53707 5.58353 5.63281 5.67100 5.71099 5.77793 5.82904 5.90468 5.96683 6.02566 6.18208 6.23285 6.33239 6.36226 6.38585 6.60729 6.68190 6.80097 6.84170 6.91858 7.52943 7.75391 7.89872 8.30436 8.49071 9.59960 10.18156 10.52267 11.53573 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.002508 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.430483 B =11159.620193 C =12481.763587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.128 4.128 5 C 0.105 3.895 6 N -0.610 5.610 7 C 0.514 3.486 8 O -0.530 6.530 9 C -0.154 4.154 10 C 0.140 3.860 11 N -0.620 5.620 12 C 0.099 3.901 13 C -0.132 4.132 14 C -0.156 4.156 15 C 0.513 3.487 16 O -0.530 6.530 17 C 0.119 3.881 18 C -0.101 4.101 19 H 0.073 0.927 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.067 0.933 48 H 0.103 0.897 49 H 0.020 0.980 50 H 0.023 0.977 51 H 0.385 0.615 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 -5.686 -27.797 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.018 4.018 6 N -0.344 5.344 7 C 0.301 3.699 8 O -0.407 6.407 9 C -0.195 4.195 10 C 0.018 3.982 11 N -0.354 5.354 12 C -0.024 4.024 13 C -0.170 4.170 14 C -0.196 4.196 15 C 0.300 3.700 16 O -0.406 6.406 17 C -0.002 4.002 18 C -0.121 4.121 19 H 0.091 0.909 20 C 0.032 3.968 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.085 0.915 48 H 0.121 0.879 49 H 0.038 0.962 50 H 0.040 0.960 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.373 -6.049 -26.813 27.589 hybrid contribution 0.070 0.327 0.877 0.939 sum 2.443 -5.722 -25.936 26.672 Atomic orbital electron populations 1.21990 0.95230 1.02007 1.01790 1.21069 0.96027 0.99355 0.93929 0.90860 1.21939 1.01079 0.95119 0.98519 1.21762 1.00437 0.93695 0.85872 1.48165 1.57371 1.21092 1.07724 1.20381 0.77751 0.80916 0.90883 1.90787 1.53418 1.63074 1.33377 1.22016 1.02705 0.98022 0.96752 1.21131 1.01113 0.92712 0.83267 1.48368 1.18875 1.44543 1.23629 1.22133 0.86309 1.02097 0.91906 1.22599 0.99267 0.98934 0.96154 1.22341 0.99186 1.00949 0.97115 1.20981 0.84634 0.78332 0.86004 1.90756 1.20036 1.58281 1.71525 1.21743 0.99897 0.92890 0.85682 1.21676 1.00793 0.94469 0.95131 0.90902 1.20679 0.95987 0.94687 0.85404 1.42421 1.56999 1.37552 1.00797 1.19194 1.23353 1.10898 0.83793 0.91267 1.24757 1.00062 0.98329 0.97810 1.69676 1.35514 1.24094 1.28496 0.86210 0.77264 0.78160 0.84655 1.21742 1.21815 1.20843 0.91760 0.93172 0.92436 0.91560 0.90913 0.90332 0.91098 0.88801 0.88908 0.89165 0.88910 0.90163 0.90780 0.89920 0.89089 0.88042 0.87850 0.91469 0.87900 0.96218 0.95964 0.78119 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.11 37.16 0.30 -1.43 16 2 C -0.08 -1.02 2.71 -90.58 -0.25 -1.27 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.23 5.62 -26.61 -0.15 -1.38 16 5 C 0.11 1.04 5.87 -3.71 -0.02 1.02 16 6 N -0.61 -8.50 2.97 -172.76 -0.51 -9.01 16 7 C 0.51 7.72 7.70 -10.99 -0.08 7.64 16 8 O -0.53 -10.50 15.39 5.55 0.09 -10.42 16 9 C -0.15 -1.63 4.37 -27.88 -0.12 -1.76 16 10 C 0.14 1.58 5.23 -4.05 -0.02 1.56 16 11 N -0.62 -5.67 2.93 -172.41 -0.51 -6.17 16 12 C 0.10 0.52 7.35 -3.12 -0.02 0.50 16 13 C -0.13 -0.46 7.18 -25.10 -0.18 -0.64 16 14 C -0.16 -0.91 6.86 -26.74 -0.18 -1.09 16 15 C 0.51 5.46 8.02 -10.86 -0.09 5.37 16 16 O -0.53 -8.16 17.59 5.55 0.10 -8.06 16 17 C 0.12 2.03 5.05 -3.71 -0.02 2.01 16 18 C -0.10 -1.64 2.15 -90.50 -0.19 -1.84 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 20 C 0.16 3.23 5.19 -4.04 -0.02 3.21 16 21 N -0.73 -19.04 5.38 -59.91 -0.32 -19.37 16 22 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -29.19 13.06 55.49 0.72 -28.47 16 26 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.66 4.98 -51.93 -0.26 0.40 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 36 H 0.07 0.66 6.69 -51.93 -0.35 0.31 16 37 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 38 H 0.09 0.76 7.69 -51.94 -0.40 0.36 16 39 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 1.12 6.69 -51.93 -0.35 0.78 16 48 H 0.10 2.21 6.21 -51.93 -0.32 1.89 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 51 H 0.38 10.72 6.89 -40.82 -0.28 10.44 16 52 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 LS Contribution 401.25 15.07 6.05 6.05 Total: -1.00 -36.91 401.25 -9.52 -46.44 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.82 Total: 6.68 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.30 Total: 4.34 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.62 Total: -63.02 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.18 Total: -18.48 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.91 -9.52 -46.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133333339.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.887 kcal (2) G-P(sol) polarization free energy of solvation -36.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds