Wall clock time and date at job start Tue Mar 31 2020 20:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.45592 * 2 1 4 4 C 1.53034 * 109.45866 * 119.97128 * 2 1 3 5 5 C 1.53188 * 109.31404 * 181.37446 * 4 2 1 6 6 N 1.46933 * 108.77495 * 305.36890 * 5 4 2 7 7 C 1.34778 * 120.62741 * 233.58614 * 6 5 4 8 8 O 1.21279 * 120.00169 * 180.02562 * 7 6 5 9 9 C 1.50698 * 120.00023 * 0.02562 * 7 6 5 10 10 N 1.46502 * 109.47041 * 180.02562 * 9 7 6 11 11 C 1.34777 * 120.00010 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99912 * 359.97438 * 11 10 9 13 13 C 1.50708 * 120.00047 * 179.97438 * 11 10 9 14 14 C 1.53775 * 113.61328 * 279.13419 * 13 11 10 15 15 C 1.53954 * 87.02104 * 220.04547 * 14 13 11 16 16 C 1.53782 * 113.61376 * 181.52754 * 13 11 10 17 17 C 1.46919 * 118.74003 * 53.60503 * 6 5 4 18 18 C 1.53195 * 108.89273 * 306.32349 * 17 6 5 19 19 H 1.09002 * 109.49585 * 294.75599 * 18 17 6 20 20 C 1.53001 * 109.49760 * 174.65835 * 18 17 6 21 21 N 1.46502 * 109.46889 * 64.99867 * 20 18 17 22 22 C 1.36940 * 119.99758 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99773 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00144 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00086 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99997 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.46948 * 89.99664 * 26 24 22 28 28 H 1.48491 * 109.47252 * 210.00163 * 26 24 22 29 29 H 1.48503 * 109.47061 * 330.00094 * 26 24 22 30 30 H 1.09004 * 109.47085 * 300.02999 * 1 2 3 31 31 H 1.08997 * 109.46967 * 60.02657 * 1 2 3 32 32 H 1.08997 * 109.46958 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.50232 * 61.42256 * 4 2 1 34 34 H 1.09007 * 109.52628 * 301.33917 * 4 2 1 35 35 H 1.08994 * 109.59289 * 185.57924 * 5 4 2 36 36 H 1.09002 * 109.58818 * 65.14921 * 5 4 2 37 37 H 1.09001 * 109.47488 * 299.99559 * 9 7 6 38 38 H 1.09001 * 109.47269 * 59.99982 * 9 7 6 39 39 H 0.97002 * 120.00255 * 359.97438 * 10 9 7 40 40 H 1.09005 * 112.84646 * 50.32996 * 13 11 10 41 41 H 1.09003 * 113.61711 * 334.56560 * 14 13 11 42 42 H 1.09005 * 113.61332 * 105.46585 * 14 13 11 43 43 H 1.08996 * 113.53840 * 270.81419 * 15 14 13 44 44 H 1.09004 * 113.73886 * 139.94087 * 15 14 13 45 45 H 1.08996 * 113.61124 * 254.52859 * 16 13 11 46 46 H 1.08993 * 113.61470 * 25.42943 * 16 13 11 47 47 H 1.09002 * 109.58751 * 66.18300 * 17 6 5 48 48 H 1.08996 * 109.58750 * 186.46484 * 17 6 5 49 49 H 1.08999 * 109.47187 * 185.00116 * 20 18 17 50 50 H 1.09003 * 109.46859 * 305.00078 * 20 18 17 51 51 H 0.97001 * 120.00406 * 0.02562 * 21 20 18 52 52 H 0.97007 * 119.99916 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5713 -0.6889 1.2641 6 7 4.0677 -1.2492 -0.0003 7 6 4.9617 -2.2577 -0.0004 8 8 5.3641 -2.7113 -1.0507 9 6 5.4613 -2.8219 1.3046 10 7 6.4173 -3.8992 1.0368 11 6 6.9978 -4.5551 2.0612 12 8 6.7291 -4.2531 3.2047 13 6 7.9808 -5.6638 1.7857 14 6 7.3145 -7.0090 1.4523 15 6 8.4103 -7.6721 2.3065 16 6 8.5246 -6.3352 3.0579 17 6 3.5712 -0.6888 -1.2645 18 6 2.0396 -0.7211 -1.2537 19 1 1.6976 -1.7560 -1.2420 20 6 1.5053 -0.0202 -2.5044 21 7 1.9003 -0.7773 -3.6948 22 6 1.5322 -0.3385 -4.9387 23 1 0.9510 0.5659 -5.0421 24 6 1.9060 -1.0560 -6.0666 25 7 1.5517 -0.6345 -7.2620 26 14 2.9107 -2.6207 -5.8877 27 1 1.9965 -3.7835 -5.7554 28 1 3.7676 -2.7986 -7.0873 29 1 3.7665 -2.5238 -4.6779 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6977 -1.7556 1.2383 34 1 1.6574 -0.2212 2.1401 35 1 3.9417 -1.2849 2.0981 36 1 3.9145 0.3405 1.3671 37 1 5.9526 -2.0346 1.8765 38 1 4.6206 -3.2153 1.8760 39 1 6.6319 -4.1410 0.1223 40 1 8.7580 -5.3743 1.0784 41 1 6.3126 -7.1151 1.8684 42 1 7.3649 -7.2712 0.3954 43 1 9.3049 -7.9329 1.7409 44 1 8.0475 -8.4918 2.9266 45 1 9.5505 -6.0541 3.2954 46 1 7.8542 -6.2566 3.9137 47 1 3.9143 0.3406 -1.3676 48 1 3.9433 -1.2833 -2.0988 49 1 0.4179 0.0352 -2.4533 50 1 1.9182 0.9870 -2.5608 51 1 2.4220 -1.5897 -3.6019 52 1 1.8126 -1.1362 -8.0502 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133336613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:04 Heat of formation + Delta-G solvation = -47.809381 kcal Electronic energy + Delta-G solvation = -29910.511305 eV Core-core repulsion = 25910.506017 eV Total energy + Delta-G solvation = -4000.005288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.85320 -40.20690 -38.37061 -37.61190 -35.25655 -34.70881 -33.88584 -32.00685 -30.43295 -29.44814 -28.11813 -26.57262 -25.99933 -25.34516 -23.43913 -22.97108 -21.29081 -21.17933 -20.30588 -19.86937 -19.19885 -18.10648 -17.51643 -16.92443 -16.43866 -16.21242 -15.70819 -15.67286 -14.95392 -14.92390 -14.57614 -14.43683 -14.09927 -13.96495 -13.58081 -13.48831 -13.27167 -13.06379 -12.95113 -12.84175 -12.62929 -12.57184 -12.33489 -12.02048 -11.87375 -11.73596 -11.58267 -11.31109 -11.04589 -10.93754 -10.92286 -10.79766 -10.71518 -10.41504 -10.22295 -10.10196 -10.03746 -9.88615 -9.55518 -9.46881 -8.90139 -8.73359 -7.21306 -5.75285 -3.10905 2.28770 2.39101 2.51875 3.09558 3.42024 3.48666 3.50148 4.10042 4.13040 4.19818 4.34963 4.42117 4.51953 4.62463 4.69024 4.70185 4.76800 4.95433 4.99597 5.02734 5.12399 5.18330 5.21042 5.29956 5.39566 5.43642 5.50374 5.50873 5.55761 5.57172 5.57734 5.65472 5.69497 5.71651 5.79550 5.81894 5.95723 5.96766 6.05289 6.05893 6.20823 6.28722 6.32004 6.39776 6.67978 6.73488 7.17839 7.22201 7.88574 7.93735 8.00181 8.43579 9.22579 9.95392 10.14447 11.42927 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.002877 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.255995 B = 9731.655581 C =11872.199091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.129 4.129 5 C 0.102 3.898 6 N -0.605 5.605 7 C 0.506 3.494 8 O -0.533 6.533 9 C 0.101 3.899 10 N -0.717 5.717 11 C 0.526 3.474 12 O -0.544 6.544 13 C -0.138 4.138 14 C -0.125 4.125 15 C -0.142 4.142 16 C -0.117 4.117 17 C 0.117 3.883 18 C -0.106 4.106 19 H 0.074 0.926 20 C 0.163 3.837 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.880 3.120 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.273 1.273 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.413 0.587 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.098 0.902 49 H 0.037 0.963 50 H 0.027 0.973 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 -6.846 24.814 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.167 4.167 5 C -0.020 4.020 6 N -0.338 5.338 7 C 0.293 3.707 8 O -0.410 6.410 9 C -0.026 4.026 10 N -0.372 5.372 11 C 0.312 3.688 12 O -0.421 6.421 13 C -0.160 4.160 14 C -0.163 4.163 15 C -0.180 4.180 16 C -0.154 4.154 17 C -0.004 4.004 18 C -0.125 4.125 19 H 0.092 0.908 20 C 0.035 3.965 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.710 3.290 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.199 1.199 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.251 0.749 40 H 0.133 0.867 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.090 0.910 48 H 0.117 0.883 49 H 0.054 0.946 50 H 0.045 0.955 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.633 -6.708 24.873 27.503 hybrid contribution 0.691 -1.048 -0.539 1.366 sum 10.323 -7.756 24.333 27.547 Atomic orbital electron populations 1.21887 0.94706 1.02036 1.01983 1.21138 0.96196 0.99453 0.93538 0.90779 1.21989 0.94262 1.01782 0.98710 1.21855 0.95157 0.99659 0.85374 1.48120 1.42573 1.34856 1.08262 1.20467 0.79462 0.79888 0.90899 1.90743 1.57637 1.59563 1.33062 1.21102 0.94451 0.91745 0.95333 1.45820 1.44472 1.35901 1.11016 1.20573 0.81257 0.82332 0.84600 1.90684 1.63358 1.66640 1.21428 1.22812 0.98292 0.93206 1.01647 1.22875 0.99013 0.93198 1.01202 1.22864 0.99047 0.97195 0.98844 1.22805 1.01795 0.94609 0.96238 1.21793 0.93942 0.99403 0.85307 1.21835 0.94242 1.00865 0.95606 0.90797 1.20698 0.97443 0.94103 0.84220 1.42772 1.65964 1.28959 1.02569 1.19031 1.28443 1.08091 0.81830 0.89224 1.24656 1.00557 0.98679 0.95117 1.69704 1.50840 1.40652 0.97023 0.86606 0.80587 0.84594 0.77204 1.21159 1.21700 1.19880 0.93033 0.91449 0.92764 0.91390 0.90456 0.89820 0.90740 0.88479 0.88479 0.74858 0.86696 0.89627 0.90369 0.89800 0.90886 0.90948 0.88702 0.90983 0.88327 0.94576 0.95476 0.80581 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.82 37.16 0.33 -1.24 16 2 C -0.08 -0.91 2.24 -90.42 -0.20 -1.11 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 4 C -0.13 -1.10 5.36 -26.62 -0.14 -1.24 16 5 C 0.10 0.85 6.34 -3.71 -0.02 0.83 16 6 N -0.60 -7.30 2.97 -172.77 -0.51 -7.82 16 7 C 0.51 6.63 7.77 -10.99 -0.09 6.54 16 8 O -0.53 -9.09 15.08 5.56 0.08 -9.01 16 9 C 0.10 1.03 4.50 -5.19 -0.02 1.01 16 10 N -0.72 -7.53 5.53 -61.47 -0.34 -7.87 16 11 C 0.53 5.63 7.35 -10.98 -0.08 5.55 16 12 O -0.54 -7.40 15.91 5.56 0.09 -7.31 16 13 C -0.14 -1.09 4.14 -90.96 -0.38 -1.47 16 14 C -0.13 -0.87 7.64 -25.83 -0.20 -1.07 16 15 C -0.14 -0.85 8.09 -25.83 -0.21 -1.06 16 16 C -0.12 -0.86 7.40 -25.92 -0.19 -1.05 16 17 C 0.12 1.75 5.51 -3.71 -0.02 1.73 16 18 C -0.11 -1.54 1.93 -90.34 -0.17 -1.71 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.01 5.42 -4.04 -0.02 2.99 16 21 N -0.76 -18.00 5.18 -59.91 -0.31 -18.31 16 22 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 23 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 24 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -29.71 13.97 55.49 0.78 -28.94 16 26 Si 0.88 22.87 27.74 -169.99 -4.71 18.16 16 27 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 29 H -0.27 -6.87 6.52 56.52 0.37 -6.50 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.80 6.31 -51.93 -0.33 0.47 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.88 7.94 -51.93 -0.41 0.47 16 38 H 0.10 0.91 7.69 -51.93 -0.40 0.51 16 39 H 0.41 4.35 7.44 -40.82 -0.30 4.04 16 40 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.84 7.45 -51.93 -0.39 0.45 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.10 1.84 6.20 -51.93 -0.32 1.52 16 49 H 0.04 0.67 6.18 -51.93 -0.32 0.35 16 50 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.36 8.63 4.75 -40.82 -0.19 8.44 16 52 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -35.27 403.94 -9.42 -44.70 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -8.91 Total: 8.65 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.68 Total: 1.65 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.39 Total: -62.93 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.17 Total: -16.32 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.27 -9.42 -44.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133336613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.113 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds