Wall clock time and date at job start Tue Mar 31 2020 20:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.00130 * 2 1 4 4 C 1.54340 * 109.77848 * 121.16737 * 2 1 3 5 5 H 1.08999 * 110.66763 * 215.87980 * 4 2 1 6 6 N 1.46505 * 110.84574 * 339.02591 * 4 2 1 7 7 C 1.36939 * 119.99238 * 200.14526 * 6 4 2 8 8 H 1.08000 * 120.00222 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99586 * 179.97438 * 7 6 4 10 10 N 1.31615 * 119.99964 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99861 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47202 * 89.99810 * 11 9 7 13 13 H 1.48506 * 109.46905 * 209.99442 * 11 9 7 14 14 H 1.48495 * 109.47353 * 329.99267 * 11 9 7 15 15 C 1.55155 * 103.02083 * 97.49400 * 4 2 1 16 16 C 1.54910 * 101.58418 * 35.30690 * 15 4 2 17 17 N 1.47021 * 109.87870 * 238.90336 * 2 1 3 18 18 C 1.34777 * 125.64871 * 59.56638 * 17 2 1 19 19 O 1.21274 * 120.00135 * 359.97438 * 18 17 2 20 20 C 1.50706 * 119.99766 * 179.71262 * 18 17 2 21 21 C 1.52999 * 109.46573 * 179.97438 * 20 18 17 22 22 C 1.50706 * 109.46953 * 179.97438 * 21 20 18 23 23 O 1.21279 * 119.99692 * 0.02562 * 22 21 20 24 24 N 1.34777 * 120.00146 * 180.02562 * 22 21 20 25 25 C 1.46496 * 119.99875 * 180.02562 * 24 22 21 26 26 C 1.54265 * 110.03199 * 272.16137 * 25 24 22 27 27 C 1.54884 * 104.20014 * 217.10795 * 26 25 24 28 28 C 1.54889 * 102.74660 * 37.93888 * 27 26 25 29 29 C 1.53871 * 110.03428 * 154.99765 * 25 24 22 30 30 H 1.09000 * 109.47613 * 179.64364 * 1 2 3 31 31 H 1.09001 * 109.46874 * 299.64432 * 1 2 3 32 32 H 1.09001 * 109.47081 * 59.64234 * 1 2 3 33 33 H 0.96992 * 120.00161 * 20.15318 * 6 4 2 34 34 H 0.96997 * 120.00149 * 180.02562 * 10 9 7 35 35 H 1.08997 * 111.00515 * 277.23409 * 15 4 2 36 36 H 1.09002 * 111.03684 * 153.39688 * 15 4 2 37 37 H 1.08994 * 110.36974 * 204.15108 * 16 15 4 38 38 H 1.08997 * 110.45902 * 81.87201 * 16 15 4 39 39 H 1.09000 * 109.47161 * 299.99737 * 20 18 17 40 40 H 1.09001 * 109.46740 * 59.99879 * 20 18 17 41 41 H 1.09000 * 109.47486 * 299.99934 * 21 20 18 42 42 H 1.09001 * 109.47362 * 60.00657 * 21 20 18 43 43 H 0.96999 * 120.00043 * 359.97438 * 24 22 21 44 44 H 1.08998 * 110.01969 * 33.60373 * 25 24 22 45 45 H 1.08999 * 110.48597 * 335.78977 * 26 25 24 46 46 H 1.09000 * 110.48650 * 98.42837 * 26 25 24 47 47 H 1.09006 * 110.75656 * 279.62826 * 27 26 25 48 48 H 1.08996 * 110.75899 * 156.25649 * 27 26 25 49 49 H 1.09004 * 110.48674 * 203.37649 * 28 27 26 50 50 H 1.09003 * 110.48586 * 80.74392 * 28 27 26 51 51 H 1.08997 * 110.03762 * 238.56807 * 29 25 24 52 52 H 1.09007 * 110.03094 * 359.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7517 1.2427 5 1 2.9600 -0.2829 1.6226 6 7 1.0256 -0.8101 2.2863 7 6 1.3838 -1.0488 3.5863 8 1 2.4230 -1.1935 3.8423 9 6 0.4112 -1.1036 4.5752 10 7 0.7553 -1.3335 5.8246 11 14 -1.3861 -0.8526 4.1325 12 1 -2.0020 -2.1626 3.8014 13 1 -2.1000 -0.2473 5.2855 14 1 -1.4852 0.0518 2.9588 15 6 2.3561 -2.1698 0.6914 16 6 2.8612 -1.8467 -0.7369 17 7 2.0299 -0.7141 -1.1839 18 6 1.7753 -0.3844 -2.4657 19 8 1.0786 0.5756 -2.7180 20 6 2.3612 -1.2054 -3.5855 21 6 1.9205 -0.6225 -4.9297 22 6 2.5069 -1.4430 -6.0495 23 8 3.2079 -2.4000 -5.7973 24 7 2.2524 -1.1133 -7.3313 25 6 2.8220 -1.9112 -8.4198 26 6 4.2220 -1.3786 -8.7889 27 6 4.2931 -1.5320 -10.3285 28 6 2.8558 -1.1662 -10.7751 29 6 1.9534 -1.7762 -9.6828 30 1 -0.3634 -1.0276 -0.0064 31 1 -0.3633 0.5083 0.8932 32 1 -0.3633 0.5194 -0.8868 33 1 0.0924 -0.6799 2.0564 34 1 0.0757 -1.3723 6.5156 35 1 1.4521 -2.7778 0.6578 36 1 3.1325 -2.6599 1.2789 37 1 2.7177 -2.7049 -1.3933 38 1 3.9124 -1.5596 -0.7133 39 1 3.4491 -1.1858 -3.5197 40 1 2.0107 -2.2343 -3.5035 41 1 0.8326 -0.6424 -4.9953 42 1 2.2707 0.4065 -5.0119 43 1 1.6915 -0.3481 -7.5331 44 1 2.8865 -2.9575 -8.1212 45 1 4.3185 -0.3307 -8.5050 46 1 4.9965 -1.9775 -8.3097 47 1 4.5336 -2.5589 -10.6037 48 1 5.0181 -0.8374 -10.7528 49 1 2.6334 -1.6099 -11.7456 50 1 2.7317 -0.0839 -10.8122 51 1 1.5971 -2.7570 -9.9976 52 1 1.1078 -1.1172 -9.4856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179790839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:41 Heat of formation + Delta-G solvation = -67.522043 kcal Electronic energy + Delta-G solvation = -29226.183447 eV Core-core repulsion = 25225.323354 eV Total energy + Delta-G solvation = -4000.860094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.50293 -39.96000 -38.21795 -37.59403 -34.33608 -34.02533 -33.04426 -31.68332 -30.81407 -29.52165 -29.23478 -28.21837 -25.53595 -25.40782 -23.02308 -22.49889 -21.26207 -20.80746 -20.70240 -19.50801 -18.73487 -17.99434 -17.68331 -16.82152 -16.43471 -16.32195 -15.76434 -15.57008 -15.15354 -14.92615 -14.58441 -14.24636 -13.94790 -13.88383 -13.70351 -13.37847 -13.16431 -12.85855 -12.64735 -12.46499 -12.26671 -12.09022 -11.96367 -11.89817 -11.67271 -11.67157 -11.55197 -11.44288 -11.37475 -11.24701 -11.16552 -11.13473 -10.90249 -10.55271 -10.33067 -10.10690 -10.06269 -9.70584 -9.52700 -9.41449 -8.98340 -8.48704 -7.33964 -5.82356 -3.19035 2.36133 2.71651 2.72622 3.18505 3.33833 3.36852 3.42665 4.02205 4.12874 4.33139 4.39741 4.54186 4.66694 4.79684 4.85230 4.89861 4.96475 4.97972 5.02906 5.05473 5.15472 5.17181 5.20347 5.29358 5.38551 5.41051 5.42800 5.52168 5.55348 5.56073 5.62366 5.67109 5.68814 5.73144 5.73638 5.82614 5.86690 5.92781 6.03423 6.18566 6.18726 6.38323 6.51522 6.57272 6.57779 6.84717 7.13683 7.68432 7.91898 7.93161 8.25666 8.36474 9.14052 9.86297 10.05229 11.35548 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034096 B = 0.001810 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.003463 B =15465.337128 C =15837.209791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 H 0.075 0.925 4 C 0.178 3.822 5 H 0.072 0.928 6 N -0.742 5.742 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.152 4.152 16 C 0.096 3.904 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.549 6.549 20 C -0.120 4.120 21 C -0.124 4.124 22 C 0.515 3.485 23 O -0.540 6.540 24 N -0.728 5.728 25 C 0.139 3.861 26 C -0.135 4.135 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.132 4.132 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.367 0.633 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.401 0.599 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.074 0.926 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.867 0.090 -33.146 33.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 H 0.093 0.907 4 C 0.067 3.933 5 H 0.089 0.911 6 N -0.386 5.386 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.578 5.578 11 Si 0.709 3.291 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.193 4.193 16 C -0.027 4.027 17 N -0.342 5.342 18 C 0.316 3.684 19 O -0.428 6.428 20 C -0.160 4.160 21 C -0.165 4.165 22 C 0.302 3.698 23 O -0.417 6.417 24 N -0.380 5.380 25 C 0.034 3.966 26 C -0.174 4.174 27 C -0.163 4.163 28 C -0.162 4.162 29 C -0.170 4.170 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.204 0.796 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.236 0.764 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.086 -0.113 -32.907 33.298 hybrid contribution -1.556 0.405 -0.210 1.621 sum 3.530 0.291 -33.117 33.306 Atomic orbital electron populations 1.22082 0.95199 1.02244 1.02661 1.21820 0.94955 0.96091 0.84855 0.90724 1.21156 0.92956 0.92404 0.86761 0.91055 1.42968 1.04218 1.86945 1.04490 1.19060 0.95326 1.41384 0.81970 0.89032 1.24648 0.97353 1.01593 0.95171 1.69689 1.32668 1.55723 0.99679 0.86659 0.86903 0.78096 0.77455 1.20975 1.21563 1.20193 1.23502 1.01948 1.00790 0.93082 1.22435 0.94597 0.88512 0.97178 1.48603 1.50004 1.30666 1.04969 1.20222 0.80731 0.84965 0.82512 1.90667 1.39407 1.29273 1.83425 1.21330 1.02943 1.00467 0.91266 1.21378 1.03040 1.00404 0.91654 1.20804 0.80274 0.84863 0.83897 1.90708 1.38120 1.28824 1.84011 1.46219 1.53182 1.33026 1.05618 1.21650 0.92487 0.96467 0.86014 1.22800 0.96975 1.01792 0.95853 1.22487 0.96816 1.01773 0.95226 1.22362 0.94886 1.00803 0.98178 1.22448 0.98247 1.02014 0.94332 0.92573 0.90937 0.91619 0.79613 0.92965 0.90748 0.90050 0.90972 0.91314 0.88280 0.88305 0.88068 0.88053 0.76435 0.89073 0.91121 0.91023 0.91222 0.91297 0.91363 0.91434 0.90699 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 7.93 37.16 0.29 -2.56 16 2 C 0.13 2.12 3.49 -66.95 -0.23 1.88 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 4 C 0.18 3.28 3.45 -66.09 -0.23 3.05 16 5 H 0.07 1.33 8.12 -51.93 -0.42 0.90 16 6 N -0.74 -16.88 4.82 -51.64 -0.25 -17.13 16 7 C -0.25 -6.74 10.46 -15.06 -0.16 -6.90 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.66 13.97 55.49 0.78 -27.88 16 11 Si 0.88 21.77 27.74 -169.99 -4.71 17.06 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.28 -6.43 6.50 56.52 0.37 -6.06 16 15 C -0.15 -2.39 6.77 -24.58 -0.17 -2.55 16 16 C 0.10 1.21 6.69 -2.52 -0.02 1.19 16 17 N -0.61 -8.82 3.08 -163.01 -0.50 -9.32 16 18 C 0.53 7.40 7.63 -10.98 -0.08 7.31 16 19 O -0.55 -9.16 14.88 5.56 0.08 -9.08 16 20 C -0.12 -1.29 4.00 -27.88 -0.11 -1.40 16 21 C -0.12 -1.13 4.99 -27.88 -0.14 -1.27 16 22 C 0.51 4.94 7.83 -10.98 -0.09 4.86 16 23 O -0.54 -7.08 15.64 5.56 0.09 -7.00 16 24 N -0.73 -5.00 5.04 -52.73 -0.27 -5.27 16 25 C 0.14 0.93 3.25 -66.82 -0.22 0.72 16 26 C -0.14 -0.88 6.53 -25.08 -0.16 -1.05 16 27 C -0.13 -0.61 6.91 -24.74 -0.17 -0.78 16 28 C -0.12 -0.52 6.83 -25.08 -0.17 -0.69 16 29 C -0.13 -0.61 6.57 -25.62 -0.17 -0.78 16 30 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 31 H 0.07 1.35 6.71 -51.93 -0.35 1.00 16 32 H 0.06 1.14 6.74 -51.93 -0.35 0.79 16 33 H 0.37 8.31 2.80 -40.82 -0.11 8.20 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.78 7.48 -51.93 -0.39 0.39 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 40 H 0.10 1.05 7.81 -51.93 -0.41 0.64 16 41 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.40 1.80 8.32 -40.82 -0.34 1.46 16 44 H 0.09 0.79 7.56 -51.93 -0.39 0.39 16 45 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.07 0.28 7.62 -51.93 -0.40 -0.11 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -33.52 406.05 -9.66 -43.18 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -9.07 Total: 8.13 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.91 Total: 1.19 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.24 Total: -59.59 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.17 Total: -16.08 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.52 -9.66 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179790839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.346 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds