Wall clock time and date at job start Tue Mar 31 2020 21:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49977 * 2 1 4 4 C 1.53618 * 109.46023 * 120.21114 * 2 1 3 5 5 N 1.46925 * 108.54629 * 174.73648 * 4 2 1 6 6 C 1.34771 * 120.63080 * 126.36521 * 5 4 2 7 7 O 1.21284 * 120.00113 * 359.73118 * 6 5 4 8 8 C 1.50706 * 120.00210 * 179.72422 * 6 5 4 9 9 C 1.50700 * 109.47078 * 180.02562 * 8 6 5 10 10 O 1.21278 * 120.00302 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99992 * 179.97438 * 9 8 6 12 12 C 1.46495 * 120.00345 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47343 * 180.02562 * 12 11 9 14 14 C 1.53002 * 117.49888 * 116.25574 * 13 12 11 15 15 C 1.53000 * 117.50107 * 184.91336 * 13 12 11 16 16 C 1.46931 * 118.73869 * 306.10077 * 5 4 2 17 17 C 1.53191 * 108.77533 * 53.85609 * 16 5 4 18 18 C 1.53042 * 109.31354 * 305.36384 * 17 16 5 19 19 H 1.09004 * 109.46144 * 301.34908 * 18 17 16 20 20 C 1.52994 * 109.45970 * 181.37551 * 18 17 16 21 21 N 1.46501 * 109.47340 * 65.00206 * 20 18 17 22 22 C 1.36938 * 120.00276 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99881 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00248 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99567 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00035 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47180 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47286 * 120.00333 * 26 24 22 29 29 H 1.48504 * 109.46966 * 240.00242 * 26 24 22 30 30 H 1.08992 * 109.47277 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46932 * 300.06493 * 1 2 3 32 32 H 1.08997 * 109.47148 * 60.05982 * 1 2 3 33 33 H 1.09001 * 109.74230 * 55.00262 * 4 2 1 34 34 H 1.08996 * 109.66888 * 294.43124 * 4 2 1 35 35 H 1.09000 * 109.47070 * 60.00521 * 8 6 5 36 36 H 1.08996 * 109.47062 * 300.00146 * 8 6 5 37 37 H 0.96999 * 119.99445 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.47043 * 59.99999 * 12 11 9 39 39 H 1.09004 * 109.47109 * 300.00552 * 12 11 9 40 40 H 1.09002 * 115.54951 * 330.58548 * 13 12 11 41 41 H 1.09000 * 117.49996 * 215.00804 * 14 13 12 42 42 H 1.08999 * 117.49664 * 0.02562 * 14 13 12 43 43 H 1.09008 * 117.49673 * 359.97438 * 15 13 12 44 44 H 1.08999 * 117.49942 * 144.97366 * 15 13 12 45 45 H 1.09003 * 109.58388 * 173.64682 * 16 5 4 46 46 H 1.09001 * 109.58176 * 293.92405 * 16 5 4 47 47 H 1.08992 * 109.49970 * 65.32163 * 17 16 5 48 48 H 1.09003 * 109.49154 * 185.38687 * 17 16 5 49 49 H 1.09000 * 109.46903 * 185.00423 * 20 18 17 50 50 H 1.08994 * 109.47170 * 304.99854 * 20 18 17 51 51 H 0.96996 * 119.99775 * 359.97438 * 21 20 18 52 52 H 0.97004 * 119.99849 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7288 1.2517 5 7 3.5053 -0.8284 1.1688 6 6 4.2819 -0.3855 2.1773 7 8 3.7740 0.1054 3.1632 8 6 5.7814 -0.5003 2.0801 9 6 6.4103 0.0625 3.3286 10 8 5.7099 0.5122 4.2107 11 7 7.7512 0.0653 3.4653 12 6 8.3626 0.6129 4.6787 13 6 9.8849 0.4962 4.5800 14 6 10.6929 1.7953 4.5543 15 6 10.7060 0.9101 5.8029 16 6 4.1059 -1.4255 -0.0318 17 6 3.5708 -0.6938 -1.2668 18 6 2.0407 -0.7226 -1.2487 19 1 1.6971 -1.7570 -1.2357 20 6 1.5030 -0.0225 -2.4982 21 7 1.8909 -0.7826 -3.6890 22 6 1.5187 -0.3451 -4.9321 23 1 0.9394 0.5607 -5.0346 24 6 1.8867 -1.0650 -6.0604 25 7 2.5931 -2.1685 -5.9354 26 14 1.3795 -0.4677 -7.7560 27 1 0.5964 0.7873 -7.6250 28 1 2.5922 -0.2119 -8.5740 29 1 0.5460 -1.5039 -8.4170 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.6096 -1.7284 1.2982 34 1 1.7637 -0.1665 2.1430 35 1 6.1330 0.0578 1.2124 36 1 6.0594 -1.5490 1.9747 37 1 8.3113 -0.2947 2.7599 38 1 8.0106 0.0552 5.5465 39 1 8.0850 1.6618 4.7839 40 1 10.2548 -0.3384 3.9844 41 1 11.5942 1.8154 3.9417 42 1 10.1398 2.7330 4.6081 43 1 10.1615 1.2659 6.6777 44 1 11.6158 0.3474 6.0122 45 1 5.1902 -1.3230 0.0124 46 1 3.8407 -2.4814 -0.0865 47 1 3.9154 0.3401 -1.2548 48 1 3.9337 -1.1880 -2.1680 49 1 0.4159 0.0358 -2.4426 50 1 1.9181 0.9835 -2.5581 51 1 2.4115 -1.5959 -3.5970 52 1 2.8500 -2.6718 -6.7238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185482015.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:04 Heat of formation + Delta-G solvation = -42.459176 kcal Electronic energy + Delta-G solvation = -29217.044147 eV Core-core repulsion = 25217.270861 eV Total energy + Delta-G solvation = -3999.773286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.64268 -39.52469 -38.11982 -37.48223 -34.97733 -34.33290 -33.62367 -32.00425 -31.02275 -30.27476 -27.46791 -26.88181 -26.05593 -23.73700 -22.88209 -22.50150 -21.52984 -21.43184 -20.89272 -19.79969 -18.93489 -17.69619 -17.11017 -17.02182 -16.28585 -16.06367 -15.79465 -15.25294 -14.84073 -14.82284 -14.44547 -14.42146 -13.93976 -13.83975 -13.67062 -13.57628 -13.38553 -13.07085 -12.82149 -12.57843 -12.47277 -12.10076 -12.01193 -11.89560 -11.87307 -11.76752 -11.58298 -11.00488 -10.99822 -10.89343 -10.81809 -10.68203 -10.37038 -10.36124 -10.17878 -10.04250 -9.90067 -9.63716 -9.42741 -9.29872 -8.87492 -8.52092 -6.91280 -5.78555 -3.06009 2.44908 2.57980 2.69764 3.13717 3.34335 3.41727 3.48017 3.49772 4.15524 4.26253 4.39496 4.44237 4.56915 4.57683 4.75038 4.80595 4.91395 4.96681 5.00237 5.04382 5.13624 5.15570 5.22619 5.33075 5.35316 5.40851 5.47001 5.54121 5.57721 5.62251 5.67668 5.73803 5.83201 5.89592 5.93969 6.00242 6.08789 6.15224 6.25876 6.30650 6.34811 6.47957 6.53803 6.64933 6.84594 6.94374 7.19744 7.41762 7.69849 8.03246 8.26400 8.41165 9.52419 10.10960 10.45613 11.44555 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.002015 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.591646 B =13893.006633 C =15314.529952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.072 0.928 4 C 0.120 3.880 5 N -0.612 5.612 6 C 0.515 3.485 7 O -0.504 6.504 8 C -0.165 4.165 9 C 0.512 3.488 10 O -0.494 6.494 11 N -0.735 5.735 12 C 0.152 3.848 13 C -0.171 4.171 14 C -0.177 4.177 15 C -0.171 4.171 16 C 0.105 3.895 17 C -0.126 4.126 18 C -0.089 4.089 19 H 0.072 0.928 20 C 0.156 3.844 21 N -0.732 5.732 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.089 0.911 49 H 0.024 0.976 50 H 0.016 0.984 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.173 2.028 20.614 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.347 5.347 6 C 0.300 3.700 7 O -0.377 6.377 8 C -0.208 4.208 9 C 0.296 3.704 10 O -0.365 6.365 11 N -0.390 5.390 12 C 0.029 3.971 13 C -0.189 4.189 14 C -0.214 4.214 15 C -0.209 4.209 16 C -0.018 4.018 17 C -0.164 4.164 18 C -0.107 4.107 19 H 0.090 0.910 20 C 0.028 3.972 21 N -0.376 5.376 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.107 0.893 49 H 0.042 0.958 50 H 0.034 0.966 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.278 2.751 21.710 25.597 hybrid contribution 0.392 -0.290 -1.641 1.712 sum 13.670 2.461 20.069 24.407 Atomic orbital electron populations 1.21832 0.94479 1.02153 1.02031 1.21535 0.96059 0.99884 0.94171 0.90933 1.21755 0.78619 1.00741 0.99121 1.48150 1.07016 1.61346 1.18161 1.19873 0.88165 0.78863 0.83058 1.90832 1.74491 1.42424 1.29997 1.21637 0.95183 1.04978 0.99031 1.20062 0.81976 0.79796 0.88524 1.90865 1.60916 1.43430 1.41307 1.45960 1.06673 1.64836 1.21509 1.20834 0.89348 0.99358 0.87568 1.22466 0.92986 0.99827 1.03656 1.23118 1.02383 0.94637 1.01261 1.22973 1.01889 1.03603 0.92404 1.21882 0.97765 0.97634 0.84526 1.21933 0.96196 1.01084 0.97208 1.21331 0.94687 1.00188 0.94540 0.90978 1.20764 0.96720 0.94051 0.85644 1.42381 1.65370 1.28981 1.00862 1.19283 1.27408 1.06154 0.83858 0.91238 1.24716 1.01026 0.97578 0.97792 1.69660 1.42962 1.17354 1.28385 0.86133 0.77648 0.77769 0.84759 1.20603 1.21929 1.21914 0.92529 0.92994 0.91367 0.91581 0.89246 0.85960 0.86125 0.76608 0.91121 0.91351 0.87111 0.88534 0.88442 0.88390 0.88393 0.90190 0.91057 0.91791 0.89289 0.95781 0.96583 0.78342 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.82 37.16 0.33 -1.50 16 2 C -0.10 -1.28 2.43 -90.28 -0.22 -1.50 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.53 5.75 -3.49 -0.02 1.51 16 5 N -0.61 -7.50 2.97 -172.50 -0.51 -8.01 16 6 C 0.51 6.93 7.69 -10.98 -0.08 6.85 16 7 O -0.50 -9.13 13.59 -18.96 -0.26 -9.38 16 8 C -0.17 -1.48 4.53 -29.03 -0.13 -1.61 16 9 C 0.51 5.79 7.82 -10.98 -0.09 5.70 16 10 O -0.49 -8.24 14.18 -18.96 -0.27 -8.51 16 11 N -0.73 -5.55 5.56 -60.30 -0.33 -5.88 16 12 C 0.15 1.16 5.96 -4.05 -0.02 1.13 16 13 C -0.17 -0.90 5.84 -90.62 -0.53 -1.43 16 14 C -0.18 -0.89 10.18 -26.69 -0.27 -1.16 16 15 C -0.17 -0.83 10.25 -26.70 -0.27 -1.10 16 16 C 0.10 1.11 6.34 -3.71 -0.02 1.08 16 17 C -0.13 -1.72 5.25 -26.61 -0.14 -1.86 16 18 C -0.09 -1.34 1.73 -90.58 -0.16 -1.49 16 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.16 3.01 5.41 -4.04 -0.02 2.98 16 21 N -0.73 -17.78 5.32 -59.91 -0.32 -18.10 16 22 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 26 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.91 6.29 -51.93 -0.33 0.58 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.25 7.00 -51.93 -0.36 0.88 16 35 H 0.12 0.80 7.69 -51.93 -0.40 0.40 16 36 H 0.12 0.71 7.94 -51.93 -0.41 0.30 16 37 H 0.40 1.75 8.40 -40.82 -0.34 1.41 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 40 H 0.11 0.47 8.04 -51.93 -0.42 0.05 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.52 8.03 -51.93 -0.42 0.10 16 43 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.09 1.39 7.15 -51.93 -0.37 1.02 16 49 H 0.02 0.48 6.13 -51.93 -0.32 0.16 16 50 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 51 H 0.38 9.63 6.85 -40.82 -0.28 9.35 16 52 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 410.22 15.07 6.18 6.18 Total: -1.00 -36.01 410.22 -10.70 -46.71 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.99 Total: 6.24 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.90 Total: 0.44 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.44 Total: -58.81 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.53 Total: -17.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.01 -10.70 -46.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185482015.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.246 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds