Wall clock time and date at job start Tue Mar 31 2020 19:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 120.00287 * 2 1 4 4 C 1.50702 * 119.99962 * 180.02562 * 2 1 3 5 5 C 1.52991 * 109.47468 * 94.99299 * 4 2 1 6 6 C 1.50705 * 109.47038 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00103 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99971 * 180.28078 * 6 5 4 9 9 C 1.46506 * 120.00045 * 179.72497 * 8 6 5 10 10 H 1.08992 * 109.51919 * 324.99466 * 9 8 6 11 11 C 1.53117 * 109.52460 * 85.12186 * 9 8 6 12 12 C 1.53039 * 109.27669 * 177.49510 * 11 9 8 13 13 N 1.46843 * 109.57499 * 300.91733 * 12 11 9 14 14 C 1.46898 * 110.99874 * 185.80423 * 13 12 11 15 15 C 1.50700 * 109.47215 * 301.25768 * 14 13 12 16 16 O 1.21288 * 120.00399 * 354.36975 * 15 14 13 17 17 N 1.34779 * 120.00086 * 174.36572 * 15 14 13 18 18 C 1.37096 * 120.00066 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00123 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99780 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00127 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99629 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47362 * 60.00412 * 22 20 18 24 24 H 1.48505 * 109.47081 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47262 * 300.00163 * 22 20 18 26 26 C 1.46850 * 111.19850 * 61.70669 * 13 12 11 27 27 H 1.09008 * 109.46157 * 58.28028 * 26 13 12 28 28 C 1.53000 * 109.46334 * 178.23958 * 26 13 12 29 29 C 1.53026 * 109.52498 * 298.25883 * 26 13 12 30 30 H 1.08006 * 119.99753 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.00241 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47233 * 270.00288 * 3 2 1 33 33 H 1.09005 * 109.46790 * 30.00333 * 3 2 1 34 34 H 1.09003 * 109.47117 * 150.00068 * 3 2 1 35 35 H 1.09008 * 109.46619 * 334.99043 * 4 2 1 36 36 H 1.09002 * 109.46729 * 215.00218 * 4 2 1 37 37 H 1.08995 * 109.47118 * 60.00355 * 5 4 2 38 38 H 1.09002 * 109.47369 * 299.99648 * 5 4 2 39 39 H 0.97007 * 120.00184 * 359.71310 * 8 6 5 40 40 H 1.09003 * 109.50540 * 297.50351 * 11 9 8 41 41 H 1.09008 * 109.50375 * 57.61655 * 11 9 8 42 42 H 1.08995 * 109.46480 * 180.86722 * 12 11 9 43 43 H 1.09005 * 109.39835 * 60.92471 * 12 11 9 44 44 H 1.09002 * 109.47202 * 61.26172 * 14 13 12 45 45 H 1.09006 * 109.47396 * 181.25987 * 14 13 12 46 46 H 0.96998 * 120.00028 * 0.02562 * 17 15 14 47 47 H 0.97002 * 119.99593 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.47579 * 173.66348 * 28 26 13 49 49 H 1.08997 * 109.47397 * 293.66535 * 28 26 13 50 50 H 1.09000 * 109.47042 * 53.66173 * 28 26 13 51 51 H 1.09005 * 109.50294 * 299.23787 * 29 26 13 52 52 H 1.09004 * 109.54105 * 179.14285 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4272 -1.6834 -1.4377 6 6 3.1802 -2.9889 -1.4382 7 8 3.4043 -3.5602 -0.3920 8 7 3.6100 -3.5185 -2.6006 9 6 4.3472 -4.7845 -2.6006 10 1 4.9723 -4.8419 -1.7096 11 6 3.3576 -5.9529 -2.6076 12 6 4.1327 -7.2710 -2.6707 13 7 4.9599 -7.2978 -3.8837 14 6 5.6118 -8.6040 -4.0475 15 6 6.4684 -8.8926 -2.8417 16 8 6.6113 -8.0481 -1.9830 17 7 7.0758 -10.0894 -2.7174 18 6 7.8546 -10.3522 -1.6201 19 1 7.9811 -9.6004 -0.8552 20 6 8.4803 -11.5862 -1.4918 21 7 8.3259 -12.5011 -2.4223 22 14 9.5409 -11.9445 0.0036 23 1 8.7169 -11.8304 1.2338 24 1 10.0915 -13.3199 -0.0981 25 1 10.6579 -10.9678 0.0637 26 6 5.9496 -6.2130 -3.8756 27 1 6.5812 -6.3042 -2.9918 28 6 6.8165 -6.3043 -5.1330 29 6 5.2288 -4.8633 -3.8501 30 1 -0.5400 0.9354 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.2452 1.6198 -1.0276 33 1 1.4745 2.0648 0.5139 34 1 3.0160 1.1747 0.5138 35 1 1.4385 -2.0856 0.4336 36 1 2.9742 -1.1991 0.5890 37 1 3.0522 -0.9030 -1.8717 38 1 1.5165 -1.7895 -2.0271 39 1 3.4311 -3.0614 -3.4374 40 1 2.7565 -5.9262 -1.6987 41 1 2.7061 -5.8729 -3.4779 42 1 3.4306 -8.1045 -2.6914 43 1 4.7728 -7.3570 -1.7926 44 1 4.8522 -9.3792 -4.1476 45 1 6.2358 -8.5892 -4.9412 46 1 6.9618 -10.7647 -3.4042 47 1 8.7631 -13.3624 -2.3328 48 1 7.4749 -5.4372 -5.1842 49 1 7.4158 -7.2139 -5.0958 50 1 6.1762 -6.3269 -6.0148 51 1 4.6076 -4.7656 -4.7405 52 1 5.9632 -4.0581 -3.8287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274623708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:42 Heat of formation + Delta-G solvation = -68.015976 kcal Electronic energy + Delta-G solvation = -29664.104940 eV Core-core repulsion = 25663.223428 eV Total energy + Delta-G solvation = -4000.881512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.23916 -39.33101 -37.47728 -36.63417 -34.95815 -33.85421 -32.18651 -32.02096 -31.33801 -30.81900 -27.64241 -27.35396 -26.54302 -25.05635 -24.16729 -22.60219 -21.38619 -20.35524 -19.74962 -18.99893 -18.71238 -17.80478 -17.06488 -16.13179 -15.97984 -15.84954 -15.34715 -15.11402 -14.91928 -14.58663 -14.42740 -14.29077 -14.04880 -13.84186 -13.52902 -13.49563 -13.13733 -13.00617 -12.67281 -12.36605 -12.27478 -12.02667 -11.86235 -11.77283 -11.66594 -11.51141 -11.33429 -11.27888 -11.16530 -11.08911 -10.80674 -10.60828 -10.45792 -10.40355 -10.26066 -10.22725 -9.80414 -9.44420 -9.32711 -9.18849 -8.99860 -7.99116 -7.38292 -6.44945 -3.86127 1.87549 2.61040 3.13737 3.17272 3.23804 3.28464 3.83547 4.15411 4.31177 4.41911 4.57635 4.72523 4.82907 4.91503 4.98870 5.02139 5.05831 5.19364 5.20168 5.24928 5.26199 5.35903 5.45196 5.57545 5.60807 5.62745 5.67695 5.71353 5.73810 5.79889 5.86778 5.90359 5.97829 6.04823 6.10187 6.18843 6.21451 6.28908 6.30697 6.31868 6.39553 6.54196 6.55652 6.66632 6.81873 7.39427 7.48054 7.51596 7.52694 8.01741 8.21094 8.56548 9.13648 9.49938 10.00711 10.71436 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.002121 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.726784 B =13197.791073 C =14114.372964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.072 4.072 5 C -0.133 4.133 6 C 0.508 3.492 7 O -0.537 6.537 8 N -0.727 5.727 9 C 0.144 3.856 10 H 0.089 0.911 11 C -0.117 4.117 12 C 0.039 3.961 13 N -0.509 5.509 14 C 0.037 3.963 15 C 0.406 3.594 16 O -0.593 6.593 17 N -0.556 5.556 18 C -0.302 4.302 19 H 0.102 0.898 20 C 0.024 3.976 21 N -0.899 5.899 22 Si 0.930 3.070 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.067 3.933 27 H 0.085 0.915 28 C -0.144 4.144 29 C -0.111 4.111 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.397 0.603 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.393 0.607 47 H 0.273 0.727 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.057 0.943 51 H 0.069 0.931 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 21.231 -5.232 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.125 4.125 3 C -0.178 4.178 4 C -0.110 4.110 5 C -0.173 4.173 6 C 0.294 3.706 7 O -0.413 6.413 8 N -0.377 5.377 9 C 0.040 3.960 10 H 0.107 0.893 11 C -0.156 4.156 12 C -0.089 4.089 13 N -0.233 5.233 14 C -0.095 4.095 15 C 0.192 3.808 16 O -0.480 6.480 17 N -0.192 5.192 18 C -0.432 4.432 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.539 5.539 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.042 4.042 27 H 0.102 0.898 28 C -0.201 4.201 29 C -0.149 4.149 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.226 0.774 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.087 0.913 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.414 21.248 -4.316 24.984 hybrid contribution 0.854 -0.720 0.472 1.213 sum -11.559 20.528 -3.845 23.870 Atomic orbital electron populations 1.23722 0.95252 1.01877 1.02571 1.21800 0.95438 0.95733 0.99511 1.20891 1.00319 0.94498 1.02091 1.20442 1.00957 0.94217 0.95341 1.21627 1.01128 0.95210 0.99358 1.20715 0.79312 0.86745 0.83807 1.90744 1.56370 1.62775 1.31408 1.46176 1.57900 1.24780 1.08893 1.21077 0.92935 0.82165 0.99839 0.89314 1.21886 0.97881 0.94202 1.01645 1.22255 0.96378 0.96201 0.94053 1.62487 1.21552 1.01853 1.37382 1.22111 0.97652 0.92152 0.97536 1.21105 0.85805 0.83940 0.89940 1.90412 1.66699 1.46451 1.44410 1.42049 1.42313 1.13165 1.21633 1.19665 1.23819 0.99715 0.99995 0.88037 1.25277 0.98344 0.95451 0.98728 1.69601 1.44154 1.06246 1.33935 0.85933 0.79900 0.77343 0.81149 1.19873 1.20921 1.19907 1.21739 0.93120 0.89509 0.99798 0.89755 1.21861 0.99091 1.01750 0.97431 1.21845 0.98465 0.97666 0.96962 0.88554 0.88415 0.91452 0.91916 0.91696 0.90477 0.90400 0.88973 0.88985 0.76956 0.91648 0.91838 0.91554 0.90295 0.89538 0.88899 0.77413 0.91748 0.92681 0.92333 0.92345 0.91274 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 13.89 29.01 0.40 -0.99 16 2 C -0.12 -0.94 5.31 -101.06 -0.54 -1.48 16 3 C -0.12 -0.74 10.03 36.01 0.36 -0.38 16 4 C -0.07 -0.65 4.66 -27.89 -0.13 -0.78 16 5 C -0.13 -1.06 5.68 -27.89 -0.16 -1.22 16 6 C 0.51 6.06 7.80 -10.98 -0.09 5.98 16 7 O -0.54 -8.98 15.65 5.56 0.09 -8.90 16 8 N -0.73 -7.68 5.08 -53.68 -0.27 -7.95 16 9 C 0.14 1.96 2.52 -67.81 -0.17 1.79 16 10 H 0.09 1.54 7.58 -51.93 -0.39 1.14 16 11 C -0.12 -1.69 5.68 -26.65 -0.15 -1.84 16 12 C 0.04 0.67 4.98 -3.83 -0.02 0.65 16 13 N -0.51 -8.25 4.69 -228.13 -1.07 -9.33 16 14 C 0.04 0.65 5.47 -4.98 -0.03 0.62 16 15 C 0.41 9.23 7.18 -10.98 -0.08 9.15 16 16 O -0.59 -15.13 11.22 5.55 0.06 -15.06 16 17 N -0.56 -13.86 5.29 -10.96 -0.06 -13.92 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 22 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.07 1.05 2.07 -67.73 -0.14 0.91 16 27 H 0.08 1.67 5.76 -51.92 -0.30 1.37 16 28 C -0.14 -1.97 8.54 37.16 0.32 -1.65 16 29 C -0.11 -1.38 4.85 -26.66 -0.13 -1.51 16 30 H 0.10 0.57 8.04 -52.48 -0.42 0.15 16 31 H 0.10 0.68 7.99 -52.49 -0.42 0.26 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.34 8.06 -51.93 -0.42 -0.08 16 34 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.08 0.79 7.94 -51.92 -0.41 0.38 16 36 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 2.89 8.60 -40.82 -0.35 2.54 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 43 H 0.08 1.66 5.61 -51.93 -0.29 1.37 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.09 1.48 6.04 -51.93 -0.31 1.17 16 46 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.89 6.60 -51.93 -0.34 0.54 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -31.84 410.95 -9.13 -40.97 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -8.98 Total: 14.13 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.79 Total: 1.32 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.68 Total: -54.76 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.15 Total: -23.96 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.84 -9.13 -40.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274623708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.051 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds