Wall clock time and date at job start Tue Mar 31 2020 19:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 120.00287 * 2 1 4 4 C 1.50702 * 119.99962 * 180.02562 * 2 1 3 5 5 C 1.52991 * 109.47468 * 94.99299 * 4 2 1 6 6 C 1.50705 * 109.47038 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00103 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99971 * 180.28078 * 6 5 4 9 9 C 1.46506 * 120.00045 * 179.72497 * 8 6 5 10 10 H 1.08992 * 109.51919 * 324.99466 * 9 8 6 11 11 C 1.53117 * 109.52460 * 85.12186 * 9 8 6 12 12 C 1.53039 * 109.27669 * 177.49510 * 11 9 8 13 13 N 1.46843 * 109.57499 * 300.91733 * 12 11 9 14 14 C 1.46898 * 110.99874 * 185.80423 * 13 12 11 15 15 C 1.50700 * 109.47215 * 301.25768 * 14 13 12 16 16 O 1.21288 * 120.00399 * 354.36975 * 15 14 13 17 17 N 1.34779 * 120.00086 * 174.36572 * 15 14 13 18 18 C 1.37096 * 120.00066 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00123 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99780 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00127 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99629 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47362 * 60.00412 * 22 20 18 24 24 H 1.48505 * 109.47081 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47262 * 300.00163 * 22 20 18 26 26 C 1.46850 * 111.19850 * 61.70669 * 13 12 11 27 27 H 1.09008 * 109.46157 * 58.28028 * 26 13 12 28 28 C 1.53000 * 109.46334 * 178.23958 * 26 13 12 29 29 C 1.53026 * 109.52498 * 298.25883 * 26 13 12 30 30 H 1.08006 * 119.99753 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.00241 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47233 * 270.00288 * 3 2 1 33 33 H 1.09005 * 109.46790 * 30.00333 * 3 2 1 34 34 H 1.09003 * 109.47117 * 150.00068 * 3 2 1 35 35 H 1.09008 * 109.46619 * 334.99043 * 4 2 1 36 36 H 1.09002 * 109.46729 * 215.00218 * 4 2 1 37 37 H 1.08995 * 109.47118 * 60.00355 * 5 4 2 38 38 H 1.09002 * 109.47369 * 299.99648 * 5 4 2 39 39 H 0.97007 * 120.00184 * 359.71310 * 8 6 5 40 40 H 1.09003 * 109.50540 * 297.50351 * 11 9 8 41 41 H 1.09008 * 109.50375 * 57.61655 * 11 9 8 42 42 H 1.08995 * 109.46480 * 180.86722 * 12 11 9 43 43 H 1.09005 * 109.39835 * 60.92471 * 12 11 9 44 44 H 1.09002 * 109.47202 * 61.26172 * 14 13 12 45 45 H 1.09006 * 109.47396 * 181.25987 * 14 13 12 46 46 H 0.96998 * 120.00028 * 0.02562 * 17 15 14 47 47 H 0.97002 * 119.99593 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.47579 * 173.66348 * 28 26 13 49 49 H 1.08997 * 109.47397 * 293.66535 * 28 26 13 50 50 H 1.09000 * 109.47042 * 53.66173 * 28 26 13 51 51 H 1.09005 * 109.50294 * 299.23787 * 29 26 13 52 52 H 1.09004 * 109.54105 * 179.14285 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4272 -1.6834 -1.4377 6 6 3.1802 -2.9889 -1.4382 7 8 3.4043 -3.5602 -0.3920 8 7 3.6100 -3.5185 -2.6006 9 6 4.3472 -4.7845 -2.6006 10 1 4.9723 -4.8419 -1.7096 11 6 3.3576 -5.9529 -2.6076 12 6 4.1327 -7.2710 -2.6707 13 7 4.9599 -7.2978 -3.8837 14 6 5.6118 -8.6040 -4.0475 15 6 6.4684 -8.8926 -2.8417 16 8 6.6113 -8.0481 -1.9830 17 7 7.0758 -10.0894 -2.7174 18 6 7.8546 -10.3522 -1.6201 19 1 7.9811 -9.6004 -0.8552 20 6 8.4803 -11.5862 -1.4918 21 7 8.3259 -12.5011 -2.4223 22 14 9.5409 -11.9445 0.0036 23 1 8.7169 -11.8304 1.2338 24 1 10.0915 -13.3199 -0.0981 25 1 10.6579 -10.9678 0.0637 26 6 5.9496 -6.2130 -3.8756 27 1 6.5812 -6.3042 -2.9918 28 6 6.8165 -6.3043 -5.1330 29 6 5.2288 -4.8633 -3.8501 30 1 -0.5400 0.9354 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.2452 1.6198 -1.0276 33 1 1.4745 2.0648 0.5139 34 1 3.0160 1.1747 0.5138 35 1 1.4385 -2.0856 0.4336 36 1 2.9742 -1.1991 0.5890 37 1 3.0522 -0.9030 -1.8717 38 1 1.5165 -1.7895 -2.0271 39 1 3.4311 -3.0614 -3.4374 40 1 2.7565 -5.9262 -1.6987 41 1 2.7061 -5.8729 -3.4779 42 1 3.4306 -8.1045 -2.6914 43 1 4.7728 -7.3570 -1.7926 44 1 4.8522 -9.3792 -4.1476 45 1 6.2358 -8.5892 -4.9412 46 1 6.9618 -10.7647 -3.4042 47 1 8.7631 -13.3624 -2.3328 48 1 7.4749 -5.4372 -5.1842 49 1 7.4158 -7.2139 -5.0958 50 1 6.1762 -6.3269 -6.0148 51 1 4.6076 -4.7656 -4.7405 52 1 5.9632 -4.0581 -3.8287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274623708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:41 Heat of formation + Delta-G solvation = -90.883489 kcal Electronic energy + Delta-G solvation = -29665.096550 eV Core-core repulsion = 25663.223428 eV Total energy + Delta-G solvation = -4001.873122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.47053 -40.67238 -38.99120 -37.34612 -36.31564 -35.68554 -33.42538 -33.34475 -33.02721 -31.76122 -28.77306 -28.07815 -27.87736 -26.45776 -25.43008 -23.88337 -22.57008 -21.44293 -21.23058 -20.60983 -19.73586 -19.31432 -18.03187 -17.67827 -17.19023 -16.81777 -16.63692 -16.54279 -16.34768 -15.95788 -15.63407 -15.53683 -15.29870 -14.93724 -14.87922 -14.51203 -14.27867 -14.07954 -13.79630 -13.56360 -13.44546 -13.11155 -13.00130 -12.97834 -12.94719 -12.75740 -12.56773 -12.52598 -12.48183 -12.17105 -12.07631 -11.97670 -11.83628 -11.81157 -11.75308 -11.48396 -11.31100 -10.97670 -10.82136 -10.06001 -10.00806 -9.90438 -9.01415 -8.48426 -5.98246 1.31539 1.34388 1.36946 1.47516 1.66245 2.00417 2.21219 2.26336 2.95746 3.17124 3.26258 3.65596 3.77264 3.84368 3.97681 4.03625 4.06369 4.17311 4.27284 4.36384 4.39218 4.43480 4.50242 4.55524 4.57255 4.63118 4.68436 4.72673 4.75007 4.85161 4.88363 4.92896 4.97786 5.01260 5.04390 5.08902 5.10819 5.16009 5.19834 5.24838 5.27218 5.36316 5.48597 5.55543 5.76196 5.89943 5.99838 6.05741 6.15479 6.56897 6.61370 7.09612 7.32655 7.53248 8.09181 8.66496 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.002121 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.726784 B =13197.791073 C =14114.372964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.072 4.072 5 C -0.120 4.120 6 C 0.503 3.497 7 O -0.594 6.594 8 N -0.709 5.709 9 C 0.150 3.850 10 H 0.040 0.960 11 C -0.106 4.106 12 C 0.041 3.959 13 N -0.489 5.489 14 C 0.045 3.955 15 C 0.407 3.593 16 O -0.623 6.623 17 N -0.570 5.570 18 C -0.334 4.334 19 H 0.074 0.926 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.989 3.011 23 H -0.275 1.275 24 H -0.267 1.267 25 H -0.273 1.273 26 C 0.062 3.938 27 H 0.034 0.966 28 C -0.137 4.137 29 C -0.098 4.098 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.419 0.581 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.029 0.971 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.071 0.929 49 H 0.037 0.963 50 H 0.083 0.917 51 H 0.102 0.898 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 23.110 -7.867 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.110 4.110 5 C -0.159 4.159 6 C 0.291 3.709 7 O -0.474 6.474 8 N -0.361 5.361 9 C 0.044 3.956 10 H 0.058 0.942 11 C -0.145 4.145 12 C -0.087 4.087 13 N -0.212 5.212 14 C -0.087 4.087 15 C 0.195 3.805 16 O -0.511 6.511 17 N -0.207 5.207 18 C -0.464 4.464 19 H 0.092 0.908 20 C -0.211 4.211 21 N -0.557 5.557 22 Si 0.813 3.187 23 H -0.201 1.201 24 H -0.192 1.192 25 H -0.198 1.198 26 C -0.047 4.047 27 H 0.052 0.948 28 C -0.195 4.195 29 C -0.136 4.136 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.257 0.743 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.124 0.876 45 H 0.135 0.865 46 H 0.230 0.770 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.056 0.944 50 H 0.102 0.898 51 H 0.120 0.880 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.637 23.156 -7.011 27.773 hybrid contribution 1.185 -1.249 1.324 2.171 sum -12.452 21.907 -5.688 25.833 Atomic orbital electron populations 1.23853 0.95145 1.02482 1.01747 1.21784 0.95605 0.95431 1.00316 1.20911 0.99971 0.93800 1.03041 1.20378 0.99985 0.94739 0.95863 1.21627 1.01980 0.93221 0.99120 1.21509 0.78653 0.87626 0.83073 1.90733 1.58589 1.64559 1.33551 1.45946 1.56812 1.23574 1.09783 1.20771 0.92686 0.83441 0.98692 0.94169 1.21765 0.97716 0.92974 1.01999 1.22166 0.95987 0.98130 0.92451 1.62620 1.21096 1.01462 1.36035 1.22226 0.97517 0.93447 0.95486 1.22206 0.84850 0.82629 0.90854 1.90438 1.67318 1.47230 1.46075 1.42113 1.43068 1.14112 1.21360 1.19565 1.25967 0.99978 1.00892 0.90820 1.25991 0.99003 0.94821 1.01276 1.69655 1.44557 1.06489 1.34967 0.85056 0.78165 0.77759 0.77752 1.20089 1.19174 1.19826 1.21790 0.93033 0.91016 0.98901 0.94835 1.21821 0.99086 1.01591 0.96991 1.21761 0.98699 0.95991 0.97178 0.87105 0.88701 0.90058 0.91163 0.92204 0.92516 0.92265 0.86176 0.86409 0.74311 0.93316 0.89009 0.91097 0.95255 0.87561 0.86490 0.76999 0.91242 0.90982 0.94358 0.89797 0.87996 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 13.89 67.78 0.94 -1.48 16 2 C -0.13 -1.78 5.31 -16.49 -0.09 -1.87 16 3 C -0.12 -1.24 10.03 71.24 0.71 -0.52 16 4 C -0.07 -1.28 4.66 29.85 0.14 -1.14 16 5 C -0.12 -1.67 5.68 29.85 0.17 -1.50 16 6 C 0.50 11.78 7.80 87.66 0.68 12.46 16 7 O -0.59 -21.01 15.65 -3.04 -0.05 -21.06 16 8 N -0.71 -13.75 5.08 -442.15 -2.25 -16.00 16 9 C 0.15 4.05 2.52 45.07 0.11 4.16 16 10 H 0.04 1.50 7.58 -2.39 -0.02 1.48 16 11 C -0.11 -3.01 5.68 30.65 0.17 -2.83 16 12 C 0.04 1.44 4.98 86.33 0.43 1.87 16 13 N -0.49 -15.42 4.69 -875.65 -4.11 -19.53 16 14 C 0.04 1.54 5.47 85.56 0.47 2.01 16 15 C 0.41 19.22 7.18 87.66 0.63 19.85 16 16 O -0.62 -33.88 11.22 -3.05 -0.03 -33.92 16 17 N -0.57 -29.43 5.29 -306.98 -1.62 -31.05 16 18 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 19 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 21 N -0.92 -49.80 13.05 21.66 0.28 -49.52 16 22 Si 0.99 43.95 29.55 68.60 2.03 45.98 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.06 1.88 2.07 44.93 0.09 1.98 16 27 H 0.03 1.40 5.76 -2.38 -0.01 1.39 16 28 C -0.14 -3.45 8.54 71.98 0.62 -2.83 16 29 C -0.10 -2.22 4.85 30.64 0.15 -2.08 16 30 H 0.11 1.05 8.04 -2.91 -0.02 1.03 16 31 H 0.09 1.21 7.99 -2.91 -0.02 1.19 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.62 8.06 -2.38 -0.02 0.60 16 34 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 35 H 0.06 1.22 7.94 -2.38 -0.02 1.20 16 36 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 37 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 38 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.42 4.50 8.60 -92.70 -0.80 3.70 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.07 2.35 8.12 -2.39 -0.02 2.33 16 43 H 0.03 1.33 5.61 -2.38 -0.01 1.32 16 44 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.12 3.53 6.04 -2.38 -0.01 3.52 16 46 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 47 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 48 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.04 1.11 6.60 -2.39 -0.02 1.09 16 50 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 52 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -75.42 410.95 0.15 -75.28 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.61 Total: 40.33 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.51 Total: 9.50 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -7.70 Total: -116.11 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -0.08 Total: -54.98 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.42 0.15 -75.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274623708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.607 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds