Wall clock time and date at job start Tue Mar 31 2020 19:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.58633 * 2 1 4 4 C 1.53187 * 109.70315 * 239.64020 * 2 1 3 5 5 C 1.53046 * 109.31086 * 185.51114 * 4 2 1 6 6 H 1.09004 * 109.44573 * 301.34975 * 5 4 2 7 7 N 1.46900 * 109.46162 * 181.39122 * 5 4 2 8 8 C 1.46891 * 111.00191 * 154.93167 * 7 5 4 9 9 C 1.50703 * 109.47069 * 179.97438 * 8 7 5 10 10 O 1.21289 * 120.00241 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99915 * 179.97438 * 9 8 7 12 12 C 1.37101 * 120.00005 * 179.97438 * 11 9 8 13 13 H 1.08006 * 119.99946 * 0.02562 * 12 11 9 14 14 C 1.38943 * 120.00002 * 180.27655 * 12 11 9 15 15 N 1.31410 * 120.00096 * 359.71952 * 14 12 11 16 16 Si 1.86807 * 119.99965 * 179.72715 * 14 12 11 17 17 H 1.48503 * 109.47305 * 89.99537 * 16 14 12 18 18 H 1.48502 * 109.46722 * 209.99952 * 16 14 12 19 19 H 1.48495 * 109.47039 * 329.99521 * 16 14 12 20 20 C 1.53036 * 109.53925 * 61.36589 * 5 4 2 21 21 C 1.53192 * 109.31458 * 298.63530 * 20 5 4 22 22 N 1.46932 * 109.58121 * 120.28171 * 2 1 3 23 23 C 1.34771 * 120.63512 * 353.51965 * 22 2 1 24 24 O 1.21282 * 119.99582 * 354.24556 * 23 22 2 25 25 C 1.50697 * 120.00258 * 174.24885 * 23 22 2 26 26 C 1.53004 * 109.47149 * 179.97438 * 25 23 22 27 27 C 1.53780 * 113.61358 * 272.49645 * 26 25 23 28 28 C 1.53781 * 87.08124 * 220.01933 * 27 26 25 29 29 C 1.53782 * 113.61123 * 174.99886 * 26 25 23 30 30 H 1.09000 * 109.46996 * 305.47235 * 1 2 3 31 31 H 1.08997 * 109.46456 * 65.47061 * 1 2 3 32 32 H 1.08996 * 109.47274 * 185.46964 * 1 2 3 33 33 H 1.09003 * 109.49515 * 65.56498 * 4 2 1 34 34 H 1.08991 * 109.50422 * 305.45972 * 4 2 1 35 35 H 1.00907 * 111.00069 * 30.97292 * 7 5 4 36 36 H 1.08998 * 109.47349 * 59.99594 * 8 7 5 37 37 H 1.08994 * 109.47136 * 299.99475 * 8 7 5 38 38 H 0.96993 * 119.99953 * 359.97438 * 11 9 8 39 39 H 0.97000 * 120.00106 * 180.02562 * 15 14 12 40 40 H 1.09006 * 109.49525 * 58.58792 * 20 5 4 41 41 H 1.08997 * 109.49676 * 178.64883 * 20 5 4 42 42 H 1.08996 * 109.59157 * 174.41954 * 21 20 5 43 43 H 1.08998 * 109.58861 * 294.70566 * 21 20 5 44 44 H 1.08998 * 109.46760 * 299.99530 * 25 23 22 45 45 H 1.09002 * 109.47291 * 59.99533 * 25 23 22 46 46 H 1.09001 * 112.84942 * 43.80159 * 26 25 23 47 47 H 1.09001 * 113.61795 * 334.56770 * 27 26 25 48 48 H 1.08996 * 113.61546 * 105.46970 * 27 26 25 49 49 H 1.09001 * 113.61666 * 270.88863 * 28 27 26 50 50 H 1.09000 * 113.61344 * 139.98294 * 28 27 26 51 51 H 1.09004 * 113.61203 * 254.52577 * 29 26 25 52 52 H 1.08992 * 113.61630 * 25.43270 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 3.5707 -0.8445 -1.1672 6 1 4.0070 0.1519 -1.0962 7 7 4.0726 -1.5135 -2.3749 8 6 5.4669 -1.1377 -2.6440 9 6 5.9462 -1.8424 -3.8869 10 8 5.1998 -2.5850 -4.4890 11 7 7.2042 -1.6473 -4.3294 12 6 7.6404 -2.2888 -5.4598 13 1 6.9757 -2.9501 -5.9960 14 6 8.9391 -2.0923 -5.9128 15 7 9.7476 -1.2872 -5.2608 16 14 9.5359 -2.9722 -7.4488 17 1 9.2576 -2.1313 -8.6407 18 1 10.9972 -3.2146 -7.3441 19 1 8.8272 -4.2703 -7.5824 20 6 3.9602 -1.6608 0.0672 21 6 3.4654 -0.9425 1.3266 22 7 2.0225 -0.6981 1.1955 23 6 1.1671 -1.1060 2.1537 24 8 -0.0065 -0.8075 2.0859 25 6 1.6687 -1.9330 3.3093 26 6 0.5041 -2.2595 4.2463 27 6 0.2545 -1.1839 5.3167 28 6 -0.0046 -2.3362 6.3016 29 6 0.8862 -3.2047 5.3976 30 1 -0.3633 0.5964 0.8369 31 1 -0.3632 0.4266 -0.9349 32 1 -0.3633 -1.0229 0.0980 33 1 1.7690 -0.1672 -2.1364 34 1 1.6081 -1.7257 -1.2905 35 1 3.4843 -1.3137 -3.1700 36 1 6.0910 -1.4277 -1.7987 37 1 5.5309 -0.0594 -2.7897 38 1 7.8009 -1.0532 -3.8481 39 1 10.6542 -1.1497 -5.5772 40 1 3.5036 -2.6489 0.0088 41 1 5.0446 -1.7630 0.1084 42 1 3.6523 -1.5665 2.2005 43 1 3.9904 0.0064 1.4361 44 1 2.1025 -2.8590 2.9320 45 1 2.4275 -1.3722 3.8550 46 1 -0.3963 -2.5633 3.7124 47 1 1.1389 -0.5942 5.5576 48 1 -0.6247 -0.5699 5.1219 49 1 -1.0450 -2.6603 6.3305 50 1 0.4143 -2.1655 7.2933 51 1 0.5167 -4.2220 5.2682 52 1 1.9432 -3.1674 5.6606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324050849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:24 Heat of formation + Delta-G solvation = -48.344027 kcal Electronic energy + Delta-G solvation = -29434.233511 eV Core-core repulsion = 25434.205039 eV Total energy + Delta-G solvation = -4000.028472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.88203 -39.13330 -38.37513 -37.51840 -35.11055 -33.87656 -33.40577 -31.39413 -31.07742 -30.28825 -27.82696 -26.22196 -25.89984 -24.57629 -24.03972 -23.63278 -21.84070 -20.59280 -19.68256 -19.35342 -19.01233 -17.89481 -17.01726 -16.46972 -16.17981 -16.05871 -15.46573 -15.34121 -14.96051 -14.78470 -14.51764 -14.14776 -14.05246 -13.84397 -13.76214 -13.66169 -13.10347 -12.92297 -12.75911 -12.60583 -12.33747 -12.22686 -12.07979 -12.02395 -11.79745 -11.71915 -11.60439 -11.41061 -11.20200 -11.07718 -10.92549 -10.81418 -10.60810 -10.55080 -10.48209 -10.40555 -10.23142 -9.52475 -9.20429 -8.77773 -8.46981 -8.09736 -7.97562 -6.43291 -3.84130 2.46952 2.75423 3.16715 3.25469 3.31553 3.88973 4.02632 4.12750 4.25833 4.31801 4.35524 4.49633 4.55934 4.57189 4.72270 4.85540 4.94697 5.01633 5.06324 5.09163 5.16102 5.22749 5.23797 5.30338 5.36072 5.39606 5.40136 5.41316 5.46050 5.57985 5.61699 5.63816 5.71634 5.75933 5.77984 5.84499 5.92824 5.95038 5.96993 6.08654 6.19266 6.20815 6.22223 6.30332 6.51693 7.21662 7.24648 7.53789 7.63744 8.04891 8.05029 8.59721 9.16475 9.52703 10.04220 10.74418 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.001835 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.938798 B =15256.146725 C =15859.773602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.069 0.931 4 C -0.132 4.132 5 C 0.088 3.912 6 H 0.043 0.957 7 N -0.665 5.665 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.564 5.564 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.124 4.124 21 C 0.107 3.893 22 N -0.610 5.610 23 C 0.517 3.483 24 O -0.534 6.534 25 C -0.135 4.135 26 C -0.094 4.094 27 C -0.134 4.134 28 C -0.143 4.143 29 C -0.139 4.139 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.351 0.649 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 3.452 21.817 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 H 0.087 0.913 4 C -0.171 4.171 5 C -0.022 4.022 6 H 0.061 0.939 7 N -0.297 5.297 8 C -0.081 4.081 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.163 4.163 21 C -0.017 4.017 22 N -0.344 5.344 23 C 0.305 3.695 24 O -0.411 6.411 25 C -0.174 4.174 26 C -0.112 4.112 27 C -0.171 4.171 28 C -0.181 4.181 29 C -0.176 4.176 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.171 0.829 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.092 2.577 21.639 26.508 hybrid contribution 1.031 0.877 -0.909 1.631 sum -14.061 3.454 20.730 25.285 Atomic orbital electron populations 1.22180 0.92435 1.03693 1.01013 1.21237 0.95831 0.94928 0.83603 0.91282 1.22199 0.95256 1.02180 0.97458 1.21475 0.93953 0.95318 0.91441 0.93929 1.60085 1.02422 1.61175 1.06054 1.21715 0.90745 0.97344 0.98333 1.19821 0.83545 0.86683 0.87381 1.90526 1.55464 1.40963 1.59745 1.41866 1.10855 1.41964 1.25379 1.19707 0.96772 1.24031 1.02397 0.87928 1.25259 0.95868 0.97330 0.99482 1.69609 1.07606 1.36822 1.40299 0.85856 0.77695 0.79721 0.81014 1.20422 1.20913 1.19409 1.21947 1.01768 0.99950 0.92670 1.21818 0.79967 1.00699 0.99183 1.48239 1.07411 1.58244 1.20543 1.20663 0.85992 0.79694 0.83104 1.90727 1.17239 1.56515 1.76642 1.21794 0.99706 1.00512 0.95433 1.22343 0.98107 0.97110 0.93675 1.22933 1.01945 0.96360 0.95898 1.22798 1.00131 0.97301 0.97837 1.22989 1.00092 0.98303 0.96264 0.90373 0.93788 0.91683 0.90701 0.90386 0.82909 0.89703 0.93937 0.77487 0.91879 0.90556 0.90412 0.89497 0.91259 0.88735 0.89081 0.88258 0.90488 0.91330 0.90266 0.91595 0.91430 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 7.62 37.16 0.28 -1.20 16 2 C 0.15 1.49 3.49 -67.60 -0.24 1.25 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.13 -1.42 4.66 -26.61 -0.12 -1.54 16 5 C 0.09 1.03 2.46 -67.67 -0.17 0.86 16 6 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 7 N -0.66 -10.34 5.93 -107.95 -0.64 -10.98 16 8 C 0.05 0.87 5.96 -4.98 -0.03 0.85 16 9 C 0.44 10.28 7.82 -10.98 -0.09 10.19 16 10 O -0.58 -15.77 15.78 5.55 0.09 -15.69 16 11 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 12 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 13 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 16 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C -0.12 -1.26 5.59 -26.61 -0.15 -1.41 16 21 C 0.11 0.84 6.35 -3.71 -0.02 0.81 16 22 N -0.61 -5.82 2.97 -165.22 -0.49 -6.31 16 23 C 0.52 5.27 7.50 -10.99 -0.08 5.19 16 24 O -0.53 -6.86 11.32 5.56 0.06 -6.79 16 25 C -0.13 -0.99 3.89 -27.88 -0.11 -1.09 16 26 C -0.09 -0.72 3.15 -89.81 -0.28 -1.01 16 27 C -0.13 -0.99 7.63 -25.92 -0.20 -1.19 16 28 C -0.14 -0.91 8.08 -25.92 -0.21 -1.12 16 29 C -0.14 -0.87 7.64 -25.91 -0.20 -1.07 16 30 H 0.08 0.94 6.54 -51.93 -0.34 0.60 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.81 6.95 -51.93 -0.36 0.45 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.35 5.73 8.03 -39.29 -0.32 5.41 16 36 H 0.08 1.32 7.41 -51.93 -0.38 0.94 16 37 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 38 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.80 7.42 -51.93 -0.39 0.41 16 42 H 0.09 0.51 5.93 -51.93 -0.31 0.20 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.62 7.93 -51.93 -0.41 0.20 16 45 H 0.09 0.53 7.41 -51.93 -0.38 0.14 16 46 H 0.10 0.94 7.67 -51.93 -0.40 0.54 16 47 H 0.08 0.52 7.90 -51.93 -0.41 0.11 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 LS Contribution 404.13 15.07 6.09 6.09 Total: -1.00 -31.86 404.13 -10.10 -41.96 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -9.00 Total: 12.08 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.85 Total: 1.54 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.47 Total: -55.13 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.15 Total: -22.48 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.86 -10.10 -41.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324050849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.384 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds