Wall clock time and date at job start Tue Mar 31 2020 20:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.99591 * 2 1 4 4 C 1.54332 * 109.78008 * 121.16594 * 2 1 3 5 5 C 1.55147 * 103.02084 * 97.49794 * 4 2 1 6 6 H 1.09007 * 111.00887 * 277.22918 * 5 4 2 7 7 N 1.46907 * 111.00547 * 153.38061 * 5 4 2 8 8 C 1.46898 * 111.00124 * 161.35011 * 7 5 4 9 9 C 1.50697 * 109.47403 * 180.02562 * 8 7 5 10 10 O 1.21291 * 119.99861 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00367 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00406 * 180.02562 * 11 9 8 13 13 H 1.08004 * 119.99633 * 359.97438 * 12 11 9 14 14 C 1.38942 * 120.00180 * 180.02562 * 12 11 9 15 15 N 1.31406 * 120.00256 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99876 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47090 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47508 * 119.99737 * 16 14 12 19 19 H 1.48500 * 109.47146 * 240.00133 * 16 14 12 20 20 C 1.54912 * 101.58422 * 35.30453 * 5 4 2 21 21 N 1.47023 * 109.88018 * 238.90907 * 2 1 3 22 22 C 1.34766 * 125.65361 * 59.55970 * 21 2 1 23 23 O 1.21289 * 119.99973 * 359.71395 * 22 21 2 24 24 C 1.50706 * 120.00326 * 179.71568 * 22 21 2 25 25 C 1.52994 * 109.47215 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.47180 * 179.97438 * 25 24 22 27 27 C 1.52999 * 109.47331 * 179.97438 * 26 25 24 28 28 C 1.53002 * 117.49968 * 174.99931 * 27 26 25 29 29 C 1.53000 * 60.02940 * 107.50530 * 28 27 26 30 30 H 1.09002 * 109.46688 * 179.64371 * 1 2 3 31 31 H 1.08998 * 109.47145 * 299.63683 * 1 2 3 32 32 H 1.08998 * 109.46925 * 59.64268 * 1 2 3 33 33 H 1.09004 * 110.84991 * 339.03097 * 4 2 1 34 34 H 1.09000 * 110.51587 * 215.81372 * 4 2 1 35 35 H 1.00904 * 110.99794 * 37.39894 * 7 5 4 36 36 H 1.09004 * 109.47342 * 300.00168 * 8 7 5 37 37 H 1.09006 * 109.47252 * 59.99773 * 8 7 5 38 38 H 0.96998 * 120.00203 * 0.02562 * 11 9 8 39 39 H 0.97001 * 120.00363 * 180.02562 * 15 14 12 40 40 H 1.08994 * 110.36722 * 204.15008 * 20 5 4 41 41 H 1.09002 * 110.45395 * 81.87475 * 20 5 4 42 42 H 1.09002 * 109.46864 * 59.99824 * 24 22 21 43 43 H 1.08997 * 109.46749 * 299.99649 * 24 22 21 44 44 H 1.09007 * 109.47385 * 59.99830 * 25 24 22 45 45 H 1.09004 * 109.47378 * 300.00000 * 25 24 22 46 46 H 1.09002 * 109.46667 * 60.00202 * 26 25 24 47 47 H 1.08997 * 109.47591 * 300.00457 * 26 25 24 48 48 H 1.08999 * 115.55899 * 29.31737 * 27 26 25 49 49 H 1.09002 * 117.49918 * 0.02562 * 28 27 26 50 50 H 1.09002 * 117.49754 * 215.00713 * 28 27 26 51 51 H 1.09008 * 117.49673 * 107.47884 * 29 28 27 52 52 H 1.08999 * 117.49942 * 252.47315 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7516 1.2427 5 6 2.3562 -2.1696 0.6914 6 1 1.4523 -2.7779 0.6579 7 7 3.4030 -2.8293 1.4834 8 6 3.3888 -4.2824 1.2683 9 6 4.4732 -4.9233 2.0956 10 8 5.1873 -4.2371 2.7958 11 7 4.6489 -6.2590 2.0581 12 6 5.6351 -6.8421 2.8111 13 1 6.2715 -6.2310 3.4340 14 6 5.8166 -8.2191 2.7720 15 7 5.0433 -8.9625 2.0130 16 14 7.1598 -9.0136 3.7986 17 1 7.8863 -7.9657 4.5598 18 1 6.5516 -9.9821 4.7459 19 1 8.1100 -9.7245 2.9058 20 6 2.8613 -1.8465 -0.7369 21 7 2.0300 -0.7140 -1.1840 22 6 1.7754 -0.3844 -2.4657 23 8 1.0746 0.5729 -2.7180 24 6 2.3613 -1.2052 -3.5856 25 6 1.9206 -0.6224 -4.9297 26 6 2.5160 -1.4554 -6.0666 27 6 2.0747 -0.8729 -7.4108 28 6 2.6624 -1.4969 -8.6782 29 6 1.1995 -1.7508 -8.3088 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3633 0.5082 0.8932 32 1 -0.3633 0.5194 -0.8868 33 1 1.2885 -0.7952 2.0191 34 1 2.9606 -0.2815 1.6197 35 1 3.3086 -2.6079 2.4633 36 1 2.4202 -4.6843 1.5656 37 1 3.5623 -4.4953 0.2134 38 1 4.0776 -6.8078 1.4984 39 1 5.1697 -9.9238 1.9860 40 1 2.7179 -2.7047 -1.3933 41 1 3.9126 -1.5593 -0.7134 42 1 2.0109 -2.2341 -3.5036 43 1 3.4491 -1.1855 -3.5197 44 1 2.2706 0.4067 -5.0119 45 1 0.8327 -0.6424 -4.9953 46 1 2.1662 -2.4845 -5.9846 47 1 3.6038 -1.4350 -6.0009 48 1 1.8865 0.2007 -7.4191 49 1 3.3630 -2.3226 -8.5544 50 1 2.8611 -0.8337 -9.5201 51 1 0.4357 -1.2543 -8.9076 52 1 0.9379 -2.7434 -7.9424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332015012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:50 Heat of formation + Delta-G solvation = -61.994374 kcal Electronic energy + Delta-G solvation = -28702.852631 eV Core-core repulsion = 24702.232235 eV Total energy + Delta-G solvation = -4000.620396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.47820 -38.58358 -38.10385 -37.65191 -34.86894 -34.07851 -33.83092 -32.06779 -31.28496 -29.95355 -28.23943 -26.35941 -26.03510 -24.18550 -23.28695 -22.67279 -21.57945 -20.76696 -20.58538 -19.37622 -19.01637 -17.93384 -17.29526 -16.43090 -16.12392 -16.04248 -15.73182 -15.22940 -15.14433 -14.76740 -14.51467 -14.32368 -14.07196 -13.72855 -13.63066 -13.50426 -13.31656 -12.93696 -12.72122 -12.65794 -12.35125 -12.20074 -12.11814 -11.90216 -11.83978 -11.73460 -11.56979 -11.37440 -11.17253 -11.15220 -11.09102 -11.06664 -10.76757 -10.52823 -10.37542 -10.26523 -10.16911 -9.85341 -9.56527 -8.80868 -8.55003 -8.21295 -8.01188 -6.46195 -3.87143 2.51952 2.76926 3.13294 3.24411 3.31410 3.47766 3.84623 3.94570 4.14899 4.28791 4.31808 4.40608 4.55903 4.60580 4.67008 4.76926 4.84772 4.88568 4.99905 5.03661 5.10321 5.17689 5.19701 5.27458 5.29825 5.32094 5.40446 5.44039 5.47206 5.49534 5.53214 5.62788 5.65217 5.67519 5.73709 5.78986 5.84494 5.88380 5.89603 5.91180 5.98719 6.07271 6.13154 6.20596 6.27443 7.08878 7.37389 7.51271 7.51702 8.01689 8.04692 8.55952 9.13444 9.49183 10.00088 10.71480 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009652 B = 0.002115 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.306348 B =13235.509593 C =15693.314313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.130 4.130 5 C 0.074 3.926 6 H 0.059 0.941 7 N -0.657 5.657 8 C 0.049 3.951 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.563 5.563 12 C -0.299 4.299 13 H 0.104 0.896 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.929 3.071 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.107 3.893 21 N -0.615 5.615 22 C 0.530 3.470 23 O -0.544 6.544 24 C -0.139 4.139 25 C -0.099 4.099 26 C -0.091 4.091 27 C -0.152 4.152 28 C -0.184 4.184 29 C -0.182 4.182 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.356 0.644 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.091 0.909 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 14.070 -14.431 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.168 4.168 5 C -0.037 4.037 6 H 0.077 0.923 7 N -0.290 5.290 8 C -0.083 4.083 9 C 0.225 3.775 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.122 0.878 14 C -0.180 4.180 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.017 4.017 21 N -0.350 5.350 22 C 0.320 3.680 23 O -0.421 6.421 24 C -0.179 4.179 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.170 4.170 28 C -0.221 4.221 29 C -0.219 4.219 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.177 0.823 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.122 0.878 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.232 14.961 -14.651 22.885 hybrid contribution -0.459 -1.301 0.612 1.509 sum -9.691 13.660 -14.039 21.854 Atomic orbital electron populations 1.22157 0.94761 1.02264 1.02908 1.21489 0.94602 0.96291 0.84202 0.90621 1.22894 1.02432 0.94918 0.96581 1.22610 0.93049 0.94553 0.93468 0.92301 1.59986 1.46868 1.08035 1.14133 1.21746 0.97649 0.87943 1.00981 1.19762 0.87788 0.83078 0.86847 1.90531 1.49068 1.62331 1.44770 1.41870 1.31773 1.05200 1.41103 1.19754 1.10488 0.90601 1.22036 0.87825 1.25269 0.98639 0.96295 0.97762 1.69613 1.39015 1.06387 1.39227 0.85800 0.80221 0.79040 0.79287 1.19194 1.20763 1.20716 1.22401 0.95699 0.88414 0.95155 1.48603 1.50660 1.30689 1.05066 1.20396 0.80455 0.84944 0.82255 1.90676 1.38882 1.29299 1.83284 1.21703 1.02469 1.00279 0.93407 1.21306 1.01547 0.99583 0.91261 1.21213 1.00620 0.99044 0.91941 1.22355 1.04342 0.98844 0.91432 1.22975 0.96563 1.03626 0.98899 1.23052 0.93775 1.01219 1.03888 0.92599 0.91785 0.91101 0.89842 0.89241 0.82295 0.93668 0.89586 0.77468 0.91885 0.90723 0.89701 0.88912 0.88763 0.91195 0.91151 0.91671 0.91377 0.87773 0.88766 0.88981 0.89033 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.05 37.16 0.34 -1.27 16 2 C 0.14 1.42 3.51 -66.95 -0.23 1.18 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.24 5.95 -24.90 -0.15 -1.39 16 5 C 0.07 0.81 3.32 -65.56 -0.22 0.59 16 6 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 7 N -0.66 -9.36 6.00 -105.72 -0.63 -10.00 16 8 C 0.05 0.79 6.04 -4.98 -0.03 0.76 16 9 C 0.44 9.86 7.82 -10.99 -0.09 9.77 16 10 O -0.58 -15.19 15.78 5.55 0.09 -15.10 16 11 N -0.56 -13.74 5.29 -10.97 -0.06 -13.80 16 12 C -0.30 -8.14 9.68 -14.94 -0.14 -8.28 16 13 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 14 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 15 N -0.90 -23.98 13.05 55.49 0.72 -23.26 16 16 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 20 C 0.11 1.12 6.34 -2.53 -0.02 1.10 16 21 N -0.62 -6.69 3.08 -163.01 -0.50 -7.19 16 22 C 0.53 6.19 7.63 -10.99 -0.08 6.11 16 23 O -0.54 -7.98 14.87 5.55 0.08 -7.90 16 24 C -0.14 -1.20 4.71 -27.88 -0.13 -1.34 16 25 C -0.10 -0.85 4.46 -26.74 -0.12 -0.97 16 26 C -0.09 -0.67 5.50 -26.73 -0.15 -0.81 16 27 C -0.15 -1.13 5.74 -90.58 -0.52 -1.64 16 28 C -0.18 -1.26 10.25 -26.73 -0.27 -1.53 16 29 C -0.18 -1.27 10.18 -26.70 -0.27 -1.55 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.84 6.74 -51.93 -0.35 0.49 16 33 H 0.08 0.69 7.83 -51.93 -0.41 0.28 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.36 5.27 8.23 -39.29 -0.32 4.95 16 36 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 0.70 7.85 -51.93 -0.41 0.29 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.67 8.10 -51.92 -0.42 0.24 16 45 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.06 0.46 7.88 -51.93 -0.41 0.05 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 52 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 LS Contribution 421.86 15.07 6.36 6.36 Total: -1.00 -31.60 421.86 -10.43 -42.03 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -9.28 Total: 12.03 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.18 Total: 1.22 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.47 Total: -54.25 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.17 Total: -23.00 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -31.60 -10.43 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332015012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.964 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds