Wall clock time and date at job start Tue Mar 31 2020 20:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.32622 * 2 1 4 4 C 1.54914 * 110.36490 * 237.65179 * 2 1 3 5 5 C 1.55159 * 101.57789 * 204.15459 * 4 2 1 6 6 H 1.09008 * 110.71865 * 277.13800 * 5 4 2 7 7 N 1.46896 * 110.72231 * 153.86739 * 5 4 2 8 8 C 1.46894 * 111.00302 * 154.99717 * 7 5 4 9 9 C 1.50694 * 109.47419 * 179.97438 * 8 7 5 10 10 O 1.21290 * 120.00221 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00370 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00144 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00231 * 359.97438 * 12 11 9 14 14 C 1.38952 * 120.00110 * 179.97438 * 12 11 9 15 15 N 1.31417 * 119.99990 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00268 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47444 * 59.99828 * 16 14 12 18 18 H 1.48495 * 109.47243 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47059 * 300.00191 * 16 14 12 20 20 C 1.54332 * 103.02224 * 35.29989 * 5 4 2 21 21 N 1.47017 * 107.26967 * 338.14823 * 20 5 4 22 22 C 1.34777 * 125.65026 * 178.85369 * 21 20 5 23 23 O 1.21281 * 120.00007 * 179.68830 * 22 21 20 24 24 C 1.50698 * 120.00058 * 359.68090 * 22 21 20 25 25 C 1.52998 * 109.47164 * 180.02562 * 24 22 21 26 26 C 1.52998 * 109.47088 * 180.02562 * 25 24 22 27 27 C 1.53003 * 109.47233 * 179.97438 * 26 25 24 28 28 C 1.53000 * 117.49792 * 174.99945 * 27 26 25 29 29 C 1.53002 * 60.02940 * 107.48056 * 28 27 26 30 30 H 1.08999 * 109.47260 * 299.21625 * 1 2 3 31 31 H 1.09001 * 109.47277 * 59.21581 * 1 2 3 32 32 H 1.09004 * 109.46849 * 179.21269 * 1 2 3 33 33 H 1.09004 * 111.00080 * 322.22078 * 4 2 1 34 34 H 1.08992 * 111.00683 * 86.03807 * 4 2 1 35 35 H 1.00894 * 110.99989 * 31.03584 * 7 5 4 36 36 H 1.09003 * 109.47024 * 299.99857 * 8 7 5 37 37 H 1.09005 * 109.47399 * 59.99277 * 8 7 5 38 38 H 0.96998 * 120.00047 * 359.97438 * 11 9 8 39 39 H 0.96999 * 120.00161 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.99121 * 218.66685 * 20 5 4 41 41 H 1.09001 * 109.77798 * 97.50285 * 20 5 4 42 42 H 1.08995 * 109.46823 * 60.00563 * 24 22 21 43 43 H 1.09002 * 109.46967 * 300.00532 * 24 22 21 44 44 H 1.08995 * 109.47381 * 60.00182 * 25 24 22 45 45 H 1.09002 * 109.47023 * 299.99776 * 25 24 22 46 46 H 1.09011 * 109.47228 * 59.99586 * 26 25 24 47 47 H 1.09003 * 109.47609 * 299.99953 * 26 25 24 48 48 H 1.08999 * 115.54778 * 29.33307 * 27 26 25 49 49 H 1.09002 * 117.49833 * 214.98161 * 28 27 26 50 50 H 1.09002 * 117.49953 * 359.97438 * 28 27 26 51 51 H 1.09000 * 117.49996 * 107.50493 * 29 28 27 52 52 H 1.08999 * 117.49664 * 252.51862 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7771 -1.2269 5 6 3.4778 -1.2005 -0.7330 6 1 4.1945 -0.3910 -0.8718 7 7 3.9262 -2.4176 -1.4226 8 6 5.3926 -2.5025 -1.4405 9 6 5.8142 -3.7612 -2.1538 10 8 4.9757 -4.5138 -2.6027 11 7 7.1231 -4.0513 -2.2921 12 6 7.5067 -5.1961 -2.9415 13 1 6.7600 -5.8658 -3.3419 14 6 8.8561 -5.4949 -3.0846 15 7 9.7648 -4.6803 -2.5969 16 14 9.3788 -7.0544 -3.9700 17 1 8.8677 -7.0272 -5.3641 18 1 10.8611 -7.1407 -3.9874 19 1 8.8229 -8.2356 -3.2620 20 6 3.2525 -1.4716 0.7695 21 7 2.0431 -0.7373 1.1690 22 6 1.4973 -0.7339 2.4013 23 8 0.4967 -0.0841 2.6195 24 6 2.1301 -1.5375 3.5079 25 6 1.3197 -1.3616 4.7936 26 6 1.9626 -2.1771 5.9173 27 6 1.1524 -2.0007 7.2032 28 6 1.5673 -2.8317 8.4191 29 6 1.8474 -1.3278 8.3896 30 1 -0.3634 0.5016 0.8969 31 1 -0.3634 0.5260 -0.8829 32 1 -0.3633 -1.0276 -0.0141 33 1 1.4510 -1.6495 -1.4392 34 1 2.1392 -0.1286 -2.1002 35 1 3.5499 -2.4629 -2.3576 36 1 5.8004 -1.6357 -1.9606 37 1 5.7680 -2.5220 -0.4173 38 1 7.7938 -3.4496 -1.9328 39 1 10.7068 -4.8890 -2.6965 40 1 4.1081 -1.1175 1.3445 41 1 3.1090 -2.5395 0.9341 42 1 3.1505 -1.1907 3.6709 43 1 2.1446 -2.5912 3.2292 44 1 0.2994 -1.7087 4.6304 45 1 1.3048 -0.3080 5.0725 46 1 2.9828 -1.8296 6.0805 47 1 1.9778 -3.2308 5.6388 48 1 0.0888 -1.8061 7.0658 49 1 0.7765 -3.1835 9.0817 50 1 2.4170 -3.5044 8.3027 51 1 1.2410 -0.6902 9.0329 52 1 2.8814 -1.0111 8.2535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332015014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:55 Heat of formation + Delta-G solvation = -59.378614 kcal Electronic energy + Delta-G solvation = -28665.955573 eV Core-core repulsion = 24665.448605 eV Total energy + Delta-G solvation = -4000.506968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.46755 -38.56781 -38.08766 -37.61275 -34.86196 -34.08061 -33.82706 -32.02639 -31.28495 -30.06345 -28.19820 -26.35684 -25.91873 -24.15468 -23.22430 -22.66228 -21.37631 -20.90178 -20.74278 -19.33345 -18.86052 -17.92771 -17.15958 -16.87577 -16.14148 -15.99213 -15.65436 -15.23272 -14.97747 -14.63356 -14.58580 -14.48854 -14.02040 -13.82520 -13.61296 -13.50096 -13.20174 -12.89205 -12.61483 -12.39814 -12.29297 -12.24201 -12.09946 -11.88523 -11.83517 -11.68072 -11.56367 -11.40413 -11.25674 -11.18864 -11.05954 -11.04916 -10.86410 -10.50914 -10.47257 -10.25035 -10.15509 -9.63378 -9.54078 -8.75182 -8.54825 -8.20910 -8.00782 -6.45650 -3.86668 2.54362 2.79960 3.17331 3.23550 3.27747 3.48667 3.85139 3.96681 4.14885 4.27688 4.33107 4.38275 4.57220 4.61765 4.68974 4.82202 4.87014 4.92661 5.01095 5.05501 5.06011 5.18768 5.23365 5.28519 5.32022 5.34123 5.44310 5.49597 5.51013 5.51757 5.55495 5.60147 5.64433 5.67337 5.75918 5.79555 5.86094 5.88526 5.90201 6.00512 6.02986 6.07494 6.15750 6.21750 6.38954 7.09777 7.40971 7.51269 7.52049 8.01611 8.08245 8.56475 9.13624 9.49478 10.00604 10.71846 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.002062 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.688614 B =13577.446152 C =15879.085610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 H 0.074 0.926 4 C -0.134 4.134 5 C 0.075 3.925 6 H 0.062 0.938 7 N -0.658 5.658 8 C 0.049 3.951 9 C 0.439 3.561 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.106 3.894 21 N -0.615 5.615 22 C 0.531 3.469 23 O -0.543 6.543 24 C -0.139 4.139 25 C -0.099 4.099 26 C -0.091 4.091 27 C -0.151 4.151 28 C -0.184 4.184 29 C -0.182 4.182 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.356 0.644 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.094 0.906 51 H 0.091 0.909 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 11.064 14.643 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.092 0.908 4 C -0.172 4.172 5 C -0.036 4.036 6 H 0.080 0.920 7 N -0.291 5.291 8 C -0.083 4.083 9 C 0.225 3.775 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.018 4.018 21 N -0.350 5.350 22 C 0.321 3.679 23 O -0.421 6.421 24 C -0.179 4.179 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.169 4.169 28 C -0.221 4.221 29 C -0.219 4.219 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.177 0.823 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.122 0.878 49 H 0.110 0.890 50 H 0.112 0.888 51 H 0.110 0.890 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.286 10.472 15.070 23.256 hybrid contribution 1.269 0.224 -0.895 1.569 sum -13.017 10.696 14.175 22.017 Atomic orbital electron populations 1.22164 0.93780 1.02766 1.03449 1.21836 0.95369 0.95230 0.84232 0.90834 1.23107 0.95958 1.01026 0.97104 1.22489 0.95938 0.91710 0.93472 0.91994 1.60008 1.08478 1.35764 1.24878 1.21761 0.88271 0.97064 1.01239 1.19769 0.83488 0.88471 0.85805 1.90531 1.51068 1.51656 1.53491 1.41857 1.05165 1.22391 1.50472 1.19653 0.91967 0.99468 1.31921 0.87948 1.25270 0.95484 0.99283 0.97877 1.69601 1.01528 1.37315 1.45809 0.85911 0.77184 0.81318 0.79776 1.19906 1.20972 1.19855 1.22155 0.86439 0.97871 0.95329 1.48588 1.28334 1.48737 1.09333 1.20366 0.83851 0.81629 0.82047 1.90626 1.25520 1.44118 1.81825 1.21704 1.00993 1.01259 0.93935 1.21301 0.99249 1.01115 0.91998 1.21217 0.98436 1.00480 0.92697 1.22358 0.99965 1.04772 0.89849 1.22975 1.03592 0.94058 1.01445 1.23047 1.01625 0.95370 1.01900 0.89530 0.92220 0.92582 0.89237 0.89834 0.82300 0.93623 0.89566 0.77456 0.91783 0.91522 0.89594 0.89003 0.88711 0.91176 0.91194 0.91719 0.91352 0.87762 0.88978 0.88770 0.89043 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 8.71 37.16 0.32 -1.41 16 2 C 0.14 1.40 3.76 -66.41 -0.25 1.15 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -1.29 5.89 -24.58 -0.14 -1.44 16 5 C 0.07 0.82 3.27 -65.87 -0.22 0.60 16 6 H 0.06 0.63 7.83 -51.92 -0.41 0.22 16 7 N -0.66 -9.47 5.95 -106.05 -0.63 -10.10 16 8 C 0.05 0.79 6.03 -4.98 -0.03 0.76 16 9 C 0.44 9.88 7.82 -10.99 -0.09 9.79 16 10 O -0.58 -15.27 15.78 5.55 0.09 -15.18 16 11 N -0.56 -13.76 5.29 -10.97 -0.06 -13.82 16 12 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 13 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 14 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 15 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 16 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.11 1.12 6.25 -3.06 -0.02 1.10 16 21 N -0.61 -6.77 3.24 -163.04 -0.53 -7.30 16 22 C 0.53 6.26 7.63 -10.99 -0.08 6.17 16 23 O -0.54 -7.84 13.64 5.56 0.08 -7.76 16 24 C -0.14 -1.24 4.89 -27.88 -0.14 -1.38 16 25 C -0.10 -0.86 4.46 -26.73 -0.12 -0.98 16 26 C -0.09 -0.68 5.50 -26.73 -0.15 -0.83 16 27 C -0.15 -1.14 5.74 -90.58 -0.52 -1.66 16 28 C -0.18 -1.28 10.25 -26.73 -0.27 -1.55 16 29 C -0.18 -1.28 10.18 -26.69 -0.27 -1.55 16 30 H 0.09 1.08 5.89 -51.93 -0.31 0.78 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.36 5.34 8.13 -39.29 -0.32 5.02 16 36 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 45 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.06 0.46 7.88 -51.92 -0.41 0.05 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 0.79 8.07 -51.93 -0.42 0.37 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 0.63 8.03 -51.93 -0.42 0.21 16 LS Contribution 420.65 15.07 6.34 6.34 Total: -1.00 -31.43 420.65 -10.51 -41.94 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -9.28 Total: 12.55 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.21 Total: 0.95 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.49 Total: -54.49 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.16 Total: -22.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -31.43 -10.51 -41.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332015014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.437 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds