Wall clock time and date at job start Tue Mar 31 2020 20:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.99546 * 2 1 4 4 C 1.54310 * 109.98192 * 238.97545 * 2 1 3 5 5 C 1.55163 * 102.86324 * 263.04301 * 4 2 1 6 6 H 1.09001 * 110.99885 * 82.38317 * 5 4 2 7 7 N 1.46900 * 111.00678 * 206.23143 * 5 4 2 8 8 C 1.46890 * 111.00079 * 198.65178 * 7 5 4 9 9 C 1.50700 * 109.47277 * 180.02562 * 8 7 5 10 10 O 1.21285 * 119.99893 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00022 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99777 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99861 * 359.97438 * 12 11 9 14 14 C 1.38950 * 119.99777 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99894 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00123 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47312 * 90.00024 * 16 14 12 18 18 H 1.48502 * 109.46901 * 210.00190 * 16 14 12 19 19 H 1.48493 * 109.47096 * 330.00118 * 16 14 12 20 20 C 1.54911 * 101.57963 * 324.30795 * 5 4 2 21 21 N 1.47020 * 109.88299 * 121.09605 * 2 1 3 22 22 C 1.34777 * 125.64991 * 300.51648 * 21 2 1 23 23 O 1.21283 * 119.99750 * 359.71166 * 22 21 2 24 24 C 1.50702 * 119.99928 * 179.97438 * 22 21 2 25 25 C 1.52996 * 109.47159 * 179.72352 * 24 22 21 26 26 C 1.52994 * 109.47118 * 179.97438 * 25 24 22 27 27 C 1.53003 * 109.46834 * 179.97438 * 26 25 24 28 28 C 1.52998 * 117.50272 * 243.61919 * 27 26 25 29 29 C 1.53002 * 60.00372 * 252.51383 * 28 27 26 30 30 H 1.08999 * 109.46571 * 300.35394 * 1 2 3 31 31 H 1.09000 * 109.47003 * 60.35404 * 1 2 3 32 32 H 1.08999 * 109.47079 * 180.35503 * 1 2 3 33 33 H 1.09008 * 110.92446 * 144.63533 * 4 2 1 34 34 H 1.08999 * 110.75030 * 21.37788 * 4 2 1 35 35 H 1.00902 * 110.99682 * 322.60878 * 7 5 4 36 36 H 1.09003 * 109.47193 * 300.00144 * 8 7 5 37 37 H 1.09004 * 109.47341 * 60.00352 * 8 7 5 38 38 H 0.97003 * 120.00139 * 359.97438 * 11 9 8 39 39 H 0.96996 * 119.99873 * 180.02562 * 15 14 12 40 40 H 1.08992 * 110.36770 * 278.16448 * 20 5 4 41 41 H 1.09003 * 110.45466 * 155.88928 * 20 5 4 42 42 H 1.09004 * 109.46965 * 299.72211 * 24 22 21 43 43 H 1.08994 * 109.46990 * 59.72065 * 24 22 21 44 44 H 1.09004 * 109.47066 * 299.99797 * 25 24 22 45 45 H 1.09000 * 109.47234 * 59.99288 * 25 24 22 46 46 H 1.08998 * 109.46965 * 299.99512 * 26 25 24 47 47 H 1.09003 * 109.47184 * 60.00331 * 26 25 24 48 48 H 1.08995 * 115.55255 * 29.33442 * 27 26 25 49 49 H 1.09004 * 117.49647 * 0.02562 * 28 27 26 50 50 H 1.09002 * 117.50172 * 145.02101 * 28 27 26 51 51 H 1.08994 * 117.49602 * 252.50582 * 29 28 27 52 52 H 1.09000 * 117.51590 * 107.47693 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0574 -0.7474 -1.2427 5 6 2.3476 -2.1692 -0.6934 6 1 1.4382 -2.7694 -0.6630 7 7 3.3902 -2.8367 -1.4842 8 6 3.3628 -4.2899 -1.2719 9 6 4.4441 -4.9387 -2.0969 10 8 5.1663 -4.2575 -2.7937 11 7 4.6080 -6.2760 -2.0613 12 6 5.5922 -6.8662 -2.8116 13 1 6.2357 -6.2595 -3.4314 14 6 5.7615 -8.2448 -2.7745 15 7 6.7045 -8.8106 -3.4940 16 14 4.6488 -9.2940 -1.7019 17 1 3.4571 -9.7109 -2.4837 18 1 5.3900 -10.4985 -1.2491 19 1 4.2147 -8.5067 -0.5200 20 6 2.8524 -1.8530 0.7366 21 7 2.0301 -0.7141 1.1839 22 6 1.7743 -0.3853 2.4657 23 8 1.0809 0.5772 2.7180 24 6 2.3547 -1.2103 3.5853 25 6 1.9199 -0.6233 4.9297 26 6 2.5086 -1.4612 6.0664 27 6 2.0743 -0.8738 7.4107 28 6 3.1687 -0.3266 8.3293 29 6 2.4650 -1.6403 8.6759 30 1 -0.3632 0.5193 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3633 -1.0276 0.0064 33 1 2.9708 -0.2848 -1.6169 34 1 1.2973 -0.7833 -2.0232 35 1 3.3000 -2.6126 -2.4639 36 1 3.5320 -4.5062 -0.2170 37 1 2.3913 -4.6827 -1.5720 38 1 4.0302 -6.8208 -1.5044 39 1 6.8225 -9.7730 -3.4684 40 1 3.9059 -1.5746 0.7141 41 1 2.7013 -2.7106 1.3923 42 1 1.9964 -2.2365 3.5040 43 1 3.4426 -1.1990 3.5187 44 1 2.2783 0.4029 5.0110 45 1 0.8320 -0.6345 4.9962 46 1 2.1499 -2.4872 5.9849 47 1 3.5966 -1.4502 6.0000 48 1 1.1133 -0.3595 7.4106 49 1 4.1981 -0.3848 7.9757 50 1 2.9279 0.5480 8.9336 51 1 1.7614 -1.6299 9.5082 52 1 3.0313 -2.5632 8.5505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332015017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:59 Heat of formation + Delta-G solvation = -54.566092 kcal Electronic energy + Delta-G solvation = -28774.407563 eV Core-core repulsion = 24774.109282 eV Total energy + Delta-G solvation = -4000.298281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.53453 -38.71441 -38.20123 -37.72911 -34.96144 -34.12421 -33.89569 -32.11616 -31.71477 -30.07237 -28.28822 -26.53852 -26.09918 -24.05807 -23.28835 -22.70622 -21.61850 -20.80484 -20.65246 -19.47436 -19.12653 -18.37648 -17.33307 -16.53652 -16.20161 -15.97798 -15.70276 -15.37820 -15.34697 -14.88227 -14.61155 -14.40942 -14.03865 -13.78386 -13.73173 -13.42270 -13.20011 -12.99036 -12.86654 -12.61637 -12.55863 -12.35057 -12.22862 -12.06882 -11.93965 -11.87206 -11.85694 -11.42682 -11.25703 -11.21997 -11.15548 -11.14325 -10.82302 -10.63886 -10.56285 -10.20862 -10.02008 -9.90334 -9.62284 -8.86176 -8.67695 -8.33087 -8.22493 -6.35424 -3.87205 2.47127 2.71559 2.98343 3.02660 3.11633 3.44428 3.67476 3.87547 4.05862 4.18560 4.24092 4.33983 4.51053 4.57252 4.62360 4.69650 4.77502 4.80212 4.84588 4.98049 5.02187 5.12136 5.14931 5.20234 5.27876 5.29452 5.30319 5.38689 5.42412 5.45967 5.46788 5.52156 5.58974 5.60262 5.68153 5.71372 5.75731 5.78144 5.82671 5.84634 5.90593 5.94820 6.02498 6.08968 6.21941 6.96137 7.31764 7.42382 7.53089 7.99864 8.09481 8.54472 8.90188 9.37378 9.76711 10.77565 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.002274 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.411449 B =12310.044507 C =14777.440753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.130 4.130 5 C 0.074 3.926 6 H 0.059 0.941 7 N -0.656 5.656 8 C 0.047 3.953 9 C 0.449 3.551 10 O -0.564 6.564 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.880 5.880 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.107 3.893 21 N -0.616 5.616 22 C 0.530 3.470 23 O -0.543 6.543 24 C -0.139 4.139 25 C -0.099 4.099 26 C -0.091 4.091 27 C -0.152 4.152 28 C -0.182 4.182 29 C -0.184 4.184 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.358 0.642 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.092 0.908 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.525 14.312 17.889 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.168 4.168 5 C -0.037 4.037 6 H 0.077 0.923 7 N -0.290 5.290 8 C -0.086 4.086 9 C 0.234 3.766 10 O -0.446 6.446 11 N -0.229 5.229 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.520 5.520 16 Si 0.706 3.294 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.195 1.195 20 C -0.017 4.017 21 N -0.350 5.350 22 C 0.319 3.681 23 O -0.420 6.420 24 C -0.178 4.178 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.170 4.170 28 C -0.219 4.219 29 C -0.221 4.221 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.179 0.821 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.122 0.878 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.794 15.215 18.008 26.823 hybrid contribution -1.485 -1.468 0.296 2.109 sum -14.279 13.746 18.303 26.979 Atomic orbital electron populations 1.22153 0.94734 1.02234 1.02960 1.21477 0.94566 0.96382 0.84156 0.90583 1.22893 1.02540 0.94799 0.96592 1.22623 0.93017 0.94592 0.93492 0.92281 1.59964 1.47275 1.07373 1.14415 1.21780 0.97513 0.88334 1.00973 1.19658 0.87712 0.82562 0.86634 1.90573 1.47831 1.62288 1.43900 1.42208 1.32371 1.06026 1.42271 1.19428 1.10193 0.91462 1.22357 0.86253 1.25053 0.97056 0.96556 0.97521 1.69621 1.31334 1.11403 1.39618 0.86668 0.81054 0.81052 0.80585 1.19660 1.20143 1.19475 1.22400 0.95959 0.88291 0.95047 1.48603 1.50975 1.30386 1.05082 1.20395 0.80350 0.85067 0.82241 1.90678 1.39116 1.28987 1.83260 1.21702 1.02514 1.00194 0.93435 1.21308 1.01432 0.99741 0.91239 1.21213 1.00562 0.99060 0.91972 1.22343 0.99587 1.03799 0.91265 1.23042 0.97648 0.97442 1.03758 1.22973 1.04022 0.96007 0.99075 0.91087 0.91737 0.92634 0.89123 0.89821 0.82108 0.89471 0.93535 0.79698 0.91569 0.89636 0.90780 0.88941 0.88779 0.91086 0.91222 0.91445 0.91642 0.87775 0.88756 0.89010 0.88972 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.07 37.16 0.34 -1.19 16 2 C 0.14 1.35 3.48 -66.96 -0.23 1.12 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -1.16 5.97 -24.90 -0.15 -1.31 16 5 C 0.07 0.75 3.31 -65.56 -0.22 0.53 16 6 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 7 N -0.66 -8.81 6.00 -105.72 -0.63 -9.45 16 8 C 0.05 0.69 6.04 -4.98 -0.03 0.66 16 9 C 0.45 9.60 7.82 -10.98 -0.09 9.51 16 10 O -0.56 -14.47 15.78 5.55 0.09 -14.38 16 11 N -0.59 -13.44 5.09 -10.96 -0.06 -13.49 16 12 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 13 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 14 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 15 N -0.88 -25.24 13.96 55.50 0.77 -24.47 16 16 Si 0.88 18.80 27.74 -169.99 -4.71 14.09 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 20 C 0.11 1.04 6.34 -2.53 -0.02 1.02 16 21 N -0.62 -6.36 3.08 -163.02 -0.50 -6.86 16 22 C 0.53 5.94 7.63 -10.98 -0.08 5.85 16 23 O -0.54 -7.75 14.89 5.55 0.08 -7.67 16 24 C -0.14 -1.13 4.70 -27.88 -0.13 -1.27 16 25 C -0.10 -0.82 4.46 -26.74 -0.12 -0.93 16 26 C -0.09 -0.63 5.50 -26.73 -0.15 -0.78 16 27 C -0.15 -1.08 5.74 -90.61 -0.52 -1.60 16 28 C -0.18 -1.22 10.18 -26.73 -0.27 -1.49 16 29 C -0.18 -1.20 10.25 -26.73 -0.27 -1.47 16 30 H 0.07 0.81 6.75 -51.93 -0.35 0.45 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.08 0.64 7.84 -51.93 -0.41 0.24 16 35 H 0.36 5.01 8.23 -39.29 -0.32 4.69 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.37 7.36 5.76 -40.82 -0.24 7.12 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.63 7.48 -51.93 -0.39 0.24 16 42 H 0.09 0.64 7.85 -51.93 -0.41 0.23 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.67 8.10 -51.93 -0.42 0.24 16 45 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 48 H 0.10 0.75 8.07 -51.93 -0.42 0.33 16 49 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 50 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 418.77 15.07 6.31 6.31 Total: -1.00 -32.91 418.77 -10.08 -42.99 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -9.24 Total: 11.83 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.19 Total: 1.10 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.42 Total: -54.27 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.17 Total: -22.05 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.71 Total: 14.09 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.91 -10.08 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332015017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.581 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds