Wall clock time and date at job start Tue Mar 31 2020 20:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.47342 * 2 1 4 4 C 1.50697 * 109.47401 * 240.00090 * 2 1 3 5 5 O 1.21283 * 119.99951 * 240.00215 * 4 2 1 6 6 N 1.34780 * 120.00200 * 59.99972 * 4 2 1 7 7 C 1.46503 * 120.00200 * 180.02562 * 6 4 2 8 8 H 1.08999 * 110.28569 * 327.12594 * 7 6 4 9 9 C 1.54258 * 110.40900 * 89.31373 * 7 6 4 10 10 C 1.54377 * 105.06254 * 118.93796 * 9 7 6 11 11 N 1.48562 * 104.58915 * 23.85451 * 10 9 7 12 12 C 1.46902 * 110.99507 * 200.95927 * 11 10 9 13 13 C 1.50702 * 109.47027 * 285.41618 * 12 11 10 14 14 O 1.21293 * 120.00255 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72353 * 13 12 11 16 16 C 1.37101 * 120.00327 * 180.27606 * 15 13 12 17 17 H 1.08001 * 119.99426 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00412 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46646 * 60.00463 * 20 18 16 22 22 H 1.48504 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47259 * 300.00225 * 20 18 16 24 24 C 1.48558 * 104.22581 * 320.51255 * 11 10 9 25 25 H 1.08999 * 110.41332 * 280.71138 * 24 11 10 26 26 C 1.52992 * 110.41452 * 158.26542 * 24 11 10 27 27 C 1.52997 * 109.47140 * 119.99877 * 2 1 3 28 28 C 1.53782 * 113.61538 * 279.13957 * 27 2 1 29 29 C 1.53955 * 87.01901 * 220.04597 * 28 27 2 30 30 C 1.53776 * 113.61593 * 181.52980 * 27 2 1 31 31 H 1.09009 * 109.47016 * 59.99790 * 1 2 3 32 32 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47414 * 300.00427 * 1 2 3 34 34 H 0.96999 * 119.99674 * 0.02562 * 6 4 2 35 35 H 1.08997 * 110.32491 * 237.83944 * 9 7 6 36 36 H 1.09004 * 110.32195 * 359.93738 * 9 7 6 37 37 H 1.08991 * 110.41233 * 265.07479 * 10 9 7 38 38 H 1.08994 * 110.40953 * 142.62680 * 10 9 7 39 39 H 1.09004 * 109.47131 * 165.41862 * 12 11 10 40 40 H 1.09000 * 109.47732 * 45.41973 * 12 11 10 41 41 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 42 42 H 0.96996 * 120.00330 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47255 * 61.45444 * 26 24 11 44 44 H 1.09001 * 109.47357 * 181.45593 * 26 24 11 45 45 H 1.09007 * 109.46915 * 301.45722 * 26 24 11 46 46 H 1.09002 * 112.84857 * 50.33705 * 27 2 1 47 47 H 1.08995 * 113.61478 * 334.56081 * 28 27 2 48 48 H 1.09000 * 113.61559 * 105.47249 * 28 27 2 49 49 H 1.09003 * 113.53557 * 270.80993 * 29 28 27 50 50 H 1.09005 * 113.66946 * 139.93348 * 29 28 27 51 51 H 1.09004 * 113.61826 * 254.53217 * 30 27 2 52 52 H 1.08997 * 113.62159 * 25.34997 * 30 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9408 -3.6508 8 1 3.1784 -1.3714 -3.4636 9 6 1.2014 -2.0403 -4.0798 10 6 0.7447 -1.6371 -5.4983 11 7 1.8443 -0.7831 -6.0168 12 6 1.3741 0.0705 -7.1160 13 6 1.2009 -0.7622 -8.3600 14 8 1.4447 -1.9501 -8.3334 15 7 0.7694 -0.1882 -9.5005 16 6 0.6064 -0.9469 -10.6308 17 1 0.8235 -2.0046 -10.6071 18 6 0.1620 -0.3551 -11.8067 19 7 -0.1017 0.9320 -11.8356 20 14 -0.0594 -1.3887 -13.3469 21 1 -1.0548 -2.4592 -13.0856 22 1 -0.5387 -0.5265 -14.4569 23 1 1.2400 -2.0017 -13.7226 24 6 2.2548 0.0342 -4.8461 25 1 1.5603 0.8611 -4.6975 26 6 3.6792 0.5596 -5.0352 27 6 2.0399 -0.7212 1.2492 28 6 2.0343 0.1559 2.5124 29 6 3.3854 -0.4899 2.8694 30 6 3.5732 -0.7443 1.3644 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.1494 0.5389 -2.5436 35 1 1.6975 -3.0105 -4.1032 36 1 0.3500 -2.0675 -3.3997 37 1 -0.1860 -1.0718 -5.4517 38 1 0.6227 -2.5211 -6.1239 39 1 2.1055 0.8567 -7.3039 40 1 0.4192 0.5203 -6.8439 41 1 0.5741 0.7617 -9.5217 42 1 -0.4116 1.3453 -12.6566 43 1 3.7167 1.1983 -5.9176 44 1 3.9739 1.1348 -4.1575 45 1 4.3619 -0.2802 -5.1653 46 1 1.5766 -1.6973 1.3933 47 1 2.1024 1.2234 2.3030 48 1 1.2341 -0.0894 3.2107 49 1 3.2897 -1.4025 3.4579 50 1 4.1084 0.2106 3.2874 51 1 4.0136 -1.7152 1.1373 52 1 4.0630 0.0758 0.8395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479709751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:57 Heat of formation + Delta-G solvation = -56.969583 kcal Electronic energy + Delta-G solvation = -29668.943079 eV Core-core repulsion = 25668.540575 eV Total energy + Delta-G solvation = -4000.402505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.67540 -39.46487 -38.32158 -37.48941 -34.53453 -33.85666 -33.24794 -31.42847 -31.20315 -30.57275 -26.59721 -26.31150 -25.67750 -25.38687 -24.13835 -23.23886 -21.26316 -20.51707 -19.98363 -19.64900 -19.11934 -17.87435 -17.27345 -16.70029 -15.94053 -15.70600 -15.38144 -15.32365 -14.90256 -14.76093 -14.55703 -14.14692 -13.91397 -13.78342 -13.41607 -13.27021 -13.09232 -12.93595 -12.71296 -12.57316 -12.44026 -12.20335 -11.96456 -11.87941 -11.68528 -11.60547 -11.46066 -11.33895 -11.22627 -11.09819 -10.86419 -10.79455 -10.66033 -10.58093 -10.43416 -10.39558 -10.20136 -9.73134 -9.47341 -9.14135 -8.53427 -8.03383 -7.93732 -6.40398 -3.81080 2.51468 2.94104 3.20962 3.26342 3.30981 3.91969 4.01029 4.18985 4.26132 4.31829 4.33358 4.45168 4.59489 4.67481 4.72608 4.83734 4.97649 5.00036 5.02715 5.17984 5.24525 5.27226 5.34934 5.37429 5.37621 5.43591 5.45959 5.48045 5.59219 5.61119 5.63541 5.68699 5.73509 5.79717 5.87930 5.90554 5.91934 5.99549 6.03843 6.14866 6.22495 6.22818 6.31628 6.40479 6.42059 7.10522 7.17995 7.35456 7.56267 8.07510 8.10489 8.63611 9.19799 9.56046 10.08421 10.77410 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.001871 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.759519 B =14960.351399 C =14985.065077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.095 0.905 4 C 0.517 3.483 5 O -0.531 6.531 6 N -0.724 5.724 7 C 0.146 3.854 8 H 0.101 0.899 9 C -0.132 4.132 10 C 0.038 3.962 11 N -0.476 5.476 12 C 0.035 3.965 13 C 0.446 3.554 14 O -0.575 6.575 15 N -0.566 5.566 16 C -0.298 4.298 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.930 3.070 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.052 3.948 25 H 0.052 0.948 26 C -0.135 4.135 27 C -0.088 4.088 28 C -0.136 4.136 29 C -0.146 4.146 30 C -0.124 4.124 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.397 0.603 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 4.807 26.791 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.113 0.887 4 C 0.303 3.697 5 O -0.407 6.407 6 N -0.376 5.376 7 C 0.041 3.959 8 H 0.119 0.881 9 C -0.171 4.171 10 C -0.089 4.089 11 N -0.200 5.200 12 C -0.096 4.096 13 C 0.231 3.769 14 O -0.459 6.459 15 N -0.203 5.203 16 C -0.427 4.427 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.545 5.545 20 Si 0.757 3.243 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.058 4.058 25 H 0.070 0.930 26 C -0.193 4.193 27 C -0.107 4.107 28 C -0.174 4.174 29 C -0.184 4.184 30 C -0.162 4.162 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.746 3.082 26.486 26.806 hybrid contribution -1.339 1.195 -0.775 1.955 sum 1.407 4.277 25.711 26.102 Atomic orbital electron populations 1.21752 0.92898 1.02849 1.02579 1.21383 0.97459 1.00460 0.93055 0.88662 1.20634 0.79943 0.84687 0.84389 1.90704 1.37361 1.25977 1.86675 1.46193 1.53795 1.32011 1.05638 1.21743 0.99055 0.92147 0.82982 0.88070 1.22730 0.98842 0.99379 0.96121 1.23150 0.91874 0.99128 0.94781 1.65094 1.33413 1.17406 1.04113 1.22069 0.99452 0.95672 0.92450 1.19675 0.84142 0.88675 0.84401 1.90518 1.54946 1.15632 1.84754 1.41849 1.58445 1.11332 1.08709 1.19644 1.41580 0.94548 0.86972 0.87995 1.25244 0.97273 0.96041 0.99402 1.69602 1.45905 1.09936 1.29057 0.85925 0.78894 0.79125 0.80314 1.19954 1.21009 1.19901 1.22869 0.97861 0.94518 0.90526 0.92984 1.21704 0.94994 1.01333 1.01261 1.22342 0.97047 0.99047 0.92268 1.23010 0.97863 0.99254 0.97235 1.22882 0.97432 1.00814 0.97249 1.22800 0.95675 1.02554 0.95152 0.92190 0.92004 0.91366 0.76889 0.90323 0.91277 0.94407 0.88381 0.89311 0.93233 0.77575 0.91881 0.92173 0.92601 0.91392 0.88897 0.90180 0.91539 0.90331 0.91639 0.90850 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.07 37.15 0.34 -0.49 16 2 C -0.10 -0.73 2.45 -91.78 -0.23 -0.96 16 3 H 0.10 0.55 7.98 -51.92 -0.41 0.14 16 4 C 0.52 5.34 6.97 -10.99 -0.08 5.27 16 5 O -0.53 -7.51 14.60 5.55 0.08 -7.43 16 6 N -0.72 -6.76 4.92 -52.47 -0.26 -7.02 16 7 C 0.15 1.74 2.96 -66.55 -0.20 1.55 16 8 H 0.10 1.40 7.26 -51.93 -0.38 1.02 16 9 C -0.13 -1.73 6.79 -25.35 -0.17 -1.90 16 10 C 0.04 0.60 5.92 -2.18 -0.01 0.59 16 11 N -0.48 -7.78 4.66 -223.58 -1.04 -8.82 16 12 C 0.04 0.62 5.27 -4.97 -0.03 0.60 16 13 C 0.45 10.51 7.63 -10.98 -0.08 10.43 16 14 O -0.58 -15.60 14.80 5.55 0.08 -15.52 16 15 N -0.57 -14.32 5.29 -10.96 -0.06 -14.38 16 16 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 20 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 C 0.05 0.64 2.58 -66.08 -0.17 0.46 16 25 H 0.05 0.57 7.61 -51.93 -0.40 0.17 16 26 C -0.14 -1.57 9.34 37.15 0.35 -1.22 16 27 C -0.09 -0.68 2.68 -89.81 -0.24 -0.92 16 28 C -0.14 -0.82 7.63 -25.83 -0.20 -1.01 16 29 C -0.15 -0.98 8.09 -25.83 -0.21 -1.19 16 30 C -0.12 -1.06 6.29 -25.92 -0.16 -1.23 16 31 H 0.06 0.30 7.57 -51.92 -0.39 -0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.40 2.76 7.80 -40.82 -0.32 2.44 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.83 7.95 -51.93 -0.41 0.41 16 37 H 0.04 0.55 7.75 -51.93 -0.40 0.15 16 38 H 0.10 1.83 7.23 -51.93 -0.38 1.46 16 39 H 0.09 1.42 7.18 -51.93 -0.37 1.04 16 40 H 0.05 0.79 7.77 -51.93 -0.40 0.38 16 41 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.06 0.71 7.31 -51.93 -0.38 0.33 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.42 7.99 -51.93 -0.41 0.01 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 52 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 411.13 15.07 6.20 6.20 Total: -1.00 -32.48 411.13 -9.76 -42.24 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -9.13 Total: 10.45 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.33 Total: 1.99 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.63 Total: -54.02 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.16 Total: -22.95 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.48 -9.76 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479709751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.731 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds