Wall clock time and date at job start Tue Mar 31 2020 20:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99685 * 2 1 4 4 N 1.34777 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99633 * 184.65753 * 4 2 1 6 6 C 1.50704 * 110.05798 * 54.64757 * 5 4 2 7 7 O 1.21276 * 120.00508 * 218.00675 * 6 5 4 8 8 N 1.34784 * 119.99766 * 38.00798 * 6 5 4 9 9 C 1.46492 * 119.99977 * 175.01230 * 8 6 5 10 10 H 1.09002 * 109.49835 * 34.93423 * 9 8 6 11 11 C 1.53039 * 109.49861 * 274.83548 * 9 8 6 12 12 C 1.53039 * 109.54055 * 178.68245 * 11 9 8 13 13 C 1.53195 * 109.31106 * 61.36621 * 12 11 9 14 14 N 1.46929 * 108.77463 * 305.36234 * 13 12 11 15 15 C 1.36937 * 120.63412 * 233.62881 * 14 13 12 16 16 H 1.07997 * 120.00016 * 143.09340 * 15 14 13 17 17 C 1.38810 * 119.99827 * 323.09875 * 15 14 13 18 18 N 1.31619 * 120.00134 * 358.73311 * 17 15 14 19 19 Si 1.86799 * 119.99891 * 178.73262 * 17 15 14 20 20 H 1.48497 * 109.47372 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47056 * 119.99917 * 19 17 15 22 22 H 1.48497 * 109.47361 * 239.99663 * 19 17 15 23 23 C 1.46925 * 118.73855 * 53.61087 * 14 13 12 24 24 H 1.09002 * 109.58767 * 66.17223 * 23 14 13 25 25 C 1.52988 * 109.70608 * 186.53120 * 23 14 13 26 26 C 1.53872 * 110.03693 * 293.22780 * 5 4 2 27 27 C 1.54261 * 106.60184 * 240.71662 * 26 5 4 28 28 C 1.54890 * 104.19507 * 23.60940 * 27 26 5 29 29 C 1.54265 * 110.03114 * 176.06131 * 5 4 2 30 30 H 1.09003 * 109.46908 * 239.99927 * 1 2 3 31 31 H 1.08999 * 109.47096 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47019 * 120.00228 * 1 2 3 33 33 H 0.96997 * 120.00212 * 4.66131 * 4 2 1 34 34 H 0.97003 * 119.99886 * 355.00494 * 8 6 5 35 35 H 1.09000 * 109.46259 * 298.70653 * 11 9 8 36 36 H 1.09004 * 109.46023 * 58.66253 * 11 9 8 37 37 H 1.09002 * 109.50056 * 301.41639 * 12 11 9 38 38 H 1.09002 * 109.52773 * 181.33453 * 12 11 9 39 39 H 1.09006 * 109.58413 * 185.58081 * 13 12 11 40 40 H 1.08994 * 109.58559 * 65.15430 * 13 12 11 41 41 H 0.97008 * 120.00030 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.47518 * 179.35918 * 25 23 14 43 43 H 1.08999 * 109.47588 * 299.35965 * 25 23 14 44 44 H 1.09001 * 109.47497 * 59.36279 * 25 23 14 45 45 H 1.08997 * 110.02882 * 0.02562 * 26 5 4 46 46 H 1.08999 * 110.03101 * 121.43050 * 26 5 4 47 47 H 1.08996 * 110.48876 * 264.93257 * 27 26 5 48 48 H 1.09002 * 110.48785 * 142.28993 * 27 26 5 49 49 H 1.08999 * 110.75644 * 203.74050 * 28 27 26 50 50 H 1.09003 * 110.75426 * 80.36987 * 28 27 26 51 51 H 1.09004 * 110.49028 * 214.35738 * 29 5 4 52 52 H 1.09004 * 110.48759 * 336.86908 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6423 -1.1693 0.1025 6 6 4.0754 -0.3990 1.3232 7 8 5.0672 0.2976 1.2804 8 7 3.3606 -0.4844 2.4627 9 6 3.8401 0.1757 3.6794 10 1 4.3398 1.1076 3.4149 11 6 4.8244 -0.7442 4.4055 12 6 5.3510 -0.0425 5.6594 13 6 4.1811 0.2548 6.6028 14 7 3.1627 1.0170 5.8675 15 6 2.6974 2.2095 6.3538 16 1 2.4667 3.0167 5.6744 17 6 2.5225 2.3810 7.7201 18 7 2.7801 1.3892 8.5462 19 14 1.9216 4.0194 8.3864 20 1 1.7055 4.9627 7.2600 21 1 0.6434 3.8186 9.1154 22 1 2.9375 4.5794 9.3136 23 6 2.6531 0.4755 4.6003 24 1 2.0985 -0.4431 4.7921 25 6 1.7332 1.5004 3.9341 26 6 4.2607 -0.5459 -1.1610 27 6 5.1372 -1.6383 -1.8077 28 6 4.5374 -2.9665 -1.2831 29 6 4.1645 -2.6188 0.1795 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5138 -0.8899 33 1 1.6983 -2.0058 -0.0692 34 1 2.5285 -0.9828 2.4770 35 1 4.3171 -1.6657 4.6911 36 1 5.6580 -0.9789 3.7436 37 1 5.8368 0.8915 5.3768 38 1 6.0699 -0.6883 6.1636 39 1 4.5353 0.8414 7.4505 40 1 3.7511 -0.6817 6.9579 41 1 2.6582 1.5092 9.5011 42 1 1.3664 1.0995 2.9891 43 1 0.8894 1.7123 4.5907 44 1 2.2882 2.4198 3.7476 45 1 3.4736 -0.2414 -1.8507 46 1 4.8741 0.3138 -0.8913 47 1 6.1738 -1.5350 -1.4873 48 1 5.0662 -1.5906 -2.8944 49 1 5.2797 -3.7641 -1.3133 50 1 3.6499 -3.2413 -1.8531 51 1 5.0441 -2.6739 0.8209 52 1 3.3843 -3.2865 0.5454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486182000.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:38 Heat of formation + Delta-G solvation = -64.137874 kcal Electronic energy + Delta-G solvation = -32059.831839 eV Core-core repulsion = 28059.118494 eV Total energy + Delta-G solvation = -4000.713345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.01921 -38.96772 -38.01812 -36.89483 -34.38078 -33.73378 -32.47847 -31.58382 -30.43356 -29.22726 -28.91376 -27.64708 -26.10242 -24.94940 -22.84230 -21.34936 -21.28547 -20.82115 -20.63227 -19.67438 -18.96790 -17.57305 -17.08100 -16.39409 -16.15511 -15.52471 -15.17628 -15.17119 -14.80906 -14.55653 -14.21364 -13.79989 -13.69666 -13.60095 -13.31952 -13.20544 -12.89362 -12.74655 -12.56077 -12.48934 -12.14147 -11.75742 -11.62629 -11.58434 -11.46810 -11.42249 -11.23713 -11.03314 -10.87941 -10.76322 -10.72630 -10.52717 -10.25335 -10.14524 -9.99263 -9.96532 -9.90068 -9.69619 -9.42405 -8.99707 -8.54118 -8.42237 -6.52120 -5.77874 -3.31387 2.50532 2.70067 3.10620 3.37628 3.42955 3.46023 3.49507 4.25381 4.30108 4.49355 4.62304 4.67012 4.98860 5.08848 5.14988 5.19669 5.21910 5.26366 5.36582 5.39974 5.42271 5.45877 5.57202 5.62817 5.66269 5.66787 5.75034 5.83941 5.85515 6.01837 6.07516 6.14457 6.20615 6.28534 6.32261 6.42000 6.50844 6.59837 6.69802 6.79168 6.81973 6.91657 7.07311 7.16063 7.27533 7.46072 7.75362 7.84514 7.85681 8.09178 8.51027 8.56560 9.25434 9.83763 10.44357 11.29993 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.003474 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.874934 B = 8057.733415 C = 9011.517684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.504 3.496 3 O -0.518 6.518 4 N -0.728 5.728 5 C 0.156 3.844 6 C 0.524 3.476 7 O -0.533 6.533 8 N -0.712 5.712 9 C 0.130 3.870 10 H 0.085 0.915 11 C -0.115 4.115 12 C -0.142 4.142 13 C 0.171 3.829 14 N -0.582 5.582 15 C -0.251 4.251 16 H 0.067 0.933 17 C 0.010 3.990 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.170 3.830 24 H 0.024 0.976 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.119 4.119 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.402 0.598 34 H 0.391 0.609 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.018 0.982 41 H 0.253 0.747 42 H 0.035 0.965 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.086 0.914 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -12.666 -19.314 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.291 3.709 3 O -0.392 6.392 4 N -0.385 5.385 5 C 0.067 3.933 6 C 0.307 3.693 7 O -0.408 6.408 8 N -0.361 5.361 9 C 0.025 3.975 10 H 0.103 0.897 11 C -0.154 4.154 12 C -0.181 4.181 13 C 0.046 3.954 14 N -0.306 5.306 15 C -0.381 4.381 16 H 0.084 0.916 17 C -0.188 4.188 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.216 1.216 23 C 0.062 3.938 24 H 0.041 0.959 25 C -0.188 4.188 26 C -0.155 4.155 27 C -0.162 4.162 28 C -0.159 4.159 29 C -0.157 4.157 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.237 0.763 34 H 0.224 0.776 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.104 0.896 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.207 -11.338 -19.096 22.241 hybrid contribution -1.018 0.049 0.470 1.123 sum -2.226 -11.289 -18.626 21.894 Atomic orbital electron populations 1.21934 0.91392 1.05863 1.04176 1.20930 0.90720 0.83572 0.75707 1.90829 1.70433 1.31005 1.46934 1.46317 1.06061 1.09275 1.76825 1.21234 0.80660 0.96611 0.94834 1.20282 0.83810 0.81194 0.83976 1.90670 1.27234 1.39098 1.83827 1.45991 1.25473 1.54309 1.10327 1.21772 0.97047 0.95758 0.82938 0.89703 1.21756 0.97998 0.98331 0.97266 1.22217 1.00069 0.99355 0.96509 1.20862 0.86170 0.95103 0.93284 1.43968 1.43626 1.22551 1.20423 1.19155 1.38621 0.89847 0.90481 0.91570 1.25318 0.99205 0.97263 0.97061 1.69954 1.51864 1.30543 1.02359 0.86228 0.78316 0.83490 0.78844 1.20134 1.21577 1.21607 1.20555 0.90825 0.95166 0.87215 0.95878 1.21744 0.99837 0.99309 0.97926 1.22414 0.99523 0.99479 0.94061 1.22389 0.99774 0.94015 0.99995 1.22510 1.00863 0.97844 0.94672 1.22598 1.02072 0.92295 0.98734 0.89112 0.88788 0.89596 0.76309 0.77598 0.92905 0.93516 0.92614 0.93119 0.89203 0.96429 0.93667 0.94570 0.91992 0.92768 0.91123 0.88968 0.91117 0.91408 0.90927 0.91204 0.89579 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.32 36.01 0.37 -0.90 16 2 C 0.50 5.70 6.87 -10.98 -0.08 5.62 16 3 O -0.52 -8.71 15.36 5.56 0.09 -8.63 16 4 N -0.73 -6.41 4.40 -47.64 -0.21 -6.62 16 5 C 0.16 1.78 0.86 -131.85 -0.11 1.67 16 6 C 0.52 8.48 5.03 -10.98 -0.06 8.42 16 7 O -0.53 -10.93 15.08 5.56 0.08 -10.85 16 8 N -0.71 -11.21 4.30 -53.69 -0.23 -11.44 16 9 C 0.13 2.52 2.04 -67.81 -0.14 2.38 16 10 H 0.08 1.96 7.51 -51.93 -0.39 1.57 16 11 C -0.11 -2.13 5.46 -26.69 -0.15 -2.28 16 12 C -0.14 -2.88 6.08 -26.61 -0.16 -3.04 16 13 C 0.17 4.13 5.21 -3.71 -0.02 4.11 16 14 N -0.58 -14.56 2.98 -164.78 -0.49 -15.05 16 15 C -0.25 -6.85 8.39 -15.06 -0.13 -6.97 16 16 H 0.07 1.81 6.44 -52.49 -0.34 1.47 16 17 C 0.01 0.29 5.22 -17.43 -0.09 0.20 16 18 N -0.90 -25.90 10.97 55.49 0.61 -25.29 16 19 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.17 3.58 3.03 -67.60 -0.20 3.37 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 C -0.13 -2.63 7.91 37.15 0.29 -2.34 16 26 C -0.12 -1.41 5.29 -25.62 -0.14 -1.54 16 27 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 28 C -0.12 -0.85 6.91 -24.74 -0.17 -1.02 16 29 C -0.12 -1.00 5.98 -25.07 -0.15 -1.15 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.40 2.01 8.28 -40.82 -0.34 1.67 16 34 H 0.39 5.21 7.93 -40.82 -0.32 4.89 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 2.42 6.24 -51.93 -0.32 2.10 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.04 0.63 7.78 -51.93 -0.40 0.22 16 43 H 0.06 1.29 7.72 -51.93 -0.40 0.89 16 44 H 0.05 1.19 7.38 -51.93 -0.38 0.80 16 45 H 0.07 0.85 7.51 -51.93 -0.39 0.46 16 46 H 0.09 1.45 6.62 -51.93 -0.34 1.11 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 52 H 0.08 0.49 7.77 -51.93 -0.40 0.09 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -34.44 398.55 -9.34 -43.78 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -9.08 Total: 6.07 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -1.09 Total: 5.25 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.32 Total: -58.39 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.17 Total: -19.47 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.44 -9.34 -43.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486182000.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.358 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds