Wall clock time and date at job start Tue Mar 31 2020 20:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00444 * 2 1 4 4 N 1.34777 * 119.99821 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99885 * 185.22005 * 4 2 1 6 6 C 1.50704 * 110.02035 * 300.03791 * 5 4 2 7 7 O 1.21276 * 120.00469 * 144.83430 * 6 5 4 8 8 N 1.34780 * 119.99446 * 324.83285 * 6 5 4 9 9 C 1.46498 * 119.99842 * 184.93033 * 8 6 5 10 10 H 1.08995 * 109.52772 * 324.92413 * 9 8 6 11 11 C 1.53039 * 109.49369 * 85.00349 * 9 8 6 12 12 C 1.53040 * 109.53730 * 58.59005 * 11 9 8 13 13 C 1.53196 * 109.31556 * 61.36106 * 12 11 9 14 14 N 1.46922 * 108.77555 * 305.36845 * 13 12 11 15 15 C 1.36941 * 120.62867 * 233.58630 * 14 13 12 16 16 H 1.07996 * 119.99749 * 142.61612 * 15 14 13 17 17 C 1.38812 * 119.99906 * 322.62047 * 15 14 13 18 18 N 1.31608 * 120.00054 * 0.55977 * 17 15 14 19 19 Si 1.86800 * 119.99792 * 180.56288 * 17 15 14 20 20 H 1.48504 * 109.47069 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47151 * 119.99753 * 19 17 15 22 22 H 1.48493 * 109.47279 * 239.99907 * 19 17 15 23 23 C 1.46920 * 118.73929 * 53.60440 * 14 13 12 24 24 H 1.09005 * 109.58524 * 66.18249 * 23 14 13 25 25 C 1.53000 * 109.58773 * 186.60394 * 23 14 13 26 26 C 1.54269 * 110.07226 * 61.45294 * 5 4 2 27 27 C 1.54891 * 104.19504 * 95.69886 * 26 5 4 28 28 C 1.54889 * 102.74949 * 37.94123 * 27 26 5 29 29 C 1.53870 * 110.03521 * 178.64555 * 5 4 2 30 30 H 1.08996 * 109.47309 * 239.99735 * 1 2 3 31 31 H 1.09003 * 109.47282 * 0.02562 * 1 2 3 32 32 H 1.09008 * 109.47197 * 119.99827 * 1 2 3 33 33 H 0.96991 * 120.00493 * 5.21855 * 4 2 1 34 34 H 0.97004 * 120.00046 * 4.94414 * 8 6 5 35 35 H 1.08996 * 109.46550 * 298.56760 * 11 9 8 36 36 H 1.09008 * 109.44707 * 178.59755 * 11 9 8 37 37 H 1.09001 * 109.50039 * 181.31905 * 12 11 9 38 38 H 1.09004 * 109.49417 * 301.41190 * 12 11 9 39 39 H 1.08995 * 109.58458 * 65.15674 * 13 12 11 40 40 H 1.09003 * 109.58448 * 185.57742 * 13 12 11 41 41 H 0.97000 * 120.00134 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.47265 * 179.29023 * 25 23 14 43 43 H 1.08993 * 109.47598 * 299.29318 * 25 23 14 44 44 H 1.09003 * 109.47060 * 59.29549 * 25 23 14 45 45 H 1.09001 * 110.48794 * 214.37172 * 26 5 4 46 46 H 1.08997 * 110.49014 * 337.01917 * 26 5 4 47 47 H 1.08996 * 110.75592 * 279.62404 * 27 26 5 48 48 H 1.08998 * 110.75424 * 156.25522 * 27 26 5 49 49 H 1.08994 * 110.48778 * 203.37991 * 28 27 26 50 50 H 1.09005 * 110.48789 * 80.73622 * 28 27 26 51 51 H 1.09001 * 110.03090 * 359.94548 * 29 5 4 52 52 H 1.08994 * 110.03926 * 121.38286 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6412 -1.1698 0.1160 6 6 4.2509 -0.4074 -1.0322 7 8 5.2558 0.2490 -0.8588 8 7 3.6792 -0.4552 -2.2518 9 6 4.3295 0.1963 -3.3915 10 1 4.8253 1.1072 -3.0563 11 6 5.3634 -0.7533 -4.0009 12 6 4.6734 -2.0461 -4.4422 13 6 3.6255 -1.7216 -5.5115 14 7 2.7115 -0.6999 -4.9832 15 6 1.3575 -0.9048 -4.9890 16 1 0.7550 -0.5555 -4.1636 17 6 0.7595 -1.5617 -6.0557 18 7 1.4952 -1.9971 -7.0563 19 14 -1.0894 -1.8273 -6.0710 20 1 -1.6831 -1.2472 -4.8396 21 1 -1.6752 -1.1627 -7.2628 22 1 -1.3800 -3.2826 -6.1230 23 6 3.2777 0.5461 -4.4489 24 1 3.7446 1.1109 -5.2560 25 6 2.1667 1.3820 -3.8103 26 6 4.0675 -0.5363 1.4564 27 6 4.2618 -1.7464 2.4036 28 6 4.8938 -2.8110 1.4729 29 6 4.1666 -2.6160 0.1264 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8901 33 1 1.6989 -2.0055 -0.0755 34 1 2.8371 -0.9207 -2.3749 35 1 6.1266 -0.9845 -3.2579 36 1 5.8291 -0.2774 -4.8640 37 1 5.4140 -2.7313 -4.8547 38 1 4.1863 -2.5097 -3.5843 39 1 4.1207 -1.3420 -6.4052 40 1 3.0635 -2.6226 -5.7576 41 1 1.0774 -2.4565 -7.8015 42 1 2.5908 2.3000 -3.4034 43 1 1.4194 1.6299 -4.5640 44 1 1.6983 0.8116 -3.0081 45 1 5.0031 0.0105 1.3395 46 1 3.2846 0.1215 1.8336 47 1 3.3031 -2.0918 2.7906 48 1 4.9402 -1.4940 3.2185 49 1 4.7139 -3.8131 1.8621 50 1 5.9629 -2.6314 1.3586 51 1 3.3349 -3.3160 0.0466 52 1 4.8625 -2.7666 -0.6989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486182002.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:43 Heat of formation + Delta-G solvation = -63.513121 kcal Electronic energy + Delta-G solvation = -33005.464667 eV Core-core repulsion = 29004.778413 eV Total energy + Delta-G solvation = -4000.686254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.87213 -38.93376 -37.96181 -36.72476 -34.04785 -33.56318 -32.30252 -31.60419 -30.27333 -29.31013 -28.85061 -27.48092 -26.15866 -24.99889 -22.69259 -21.59194 -21.43507 -20.71349 -20.29647 -19.20161 -18.65198 -17.62531 -16.83943 -16.44330 -15.90184 -15.56451 -15.16646 -15.01079 -14.71673 -14.34702 -14.18825 -13.85839 -13.56098 -13.44089 -13.16184 -13.02967 -12.86657 -12.71484 -12.53037 -12.36377 -12.02094 -11.81882 -11.61051 -11.36011 -11.32660 -11.23260 -11.15857 -11.05799 -10.98182 -10.72675 -10.71900 -10.56456 -10.52661 -10.10822 -9.98615 -9.88132 -9.73639 -9.66155 -9.32384 -8.80126 -8.50169 -8.34605 -6.55695 -5.85038 -3.39615 2.69275 2.91287 3.28220 3.28565 3.35835 3.38269 3.69488 4.39670 4.41817 4.45576 4.78296 4.86774 5.18696 5.24019 5.28158 5.30428 5.34029 5.38089 5.40677 5.43104 5.52839 5.63122 5.66163 5.66872 5.74702 5.79600 5.84494 5.91559 5.95123 6.01887 6.12112 6.19685 6.29343 6.30560 6.40397 6.49579 6.53346 6.57555 6.71087 6.72069 6.84500 6.99218 7.06270 7.22292 7.40647 7.46761 7.71550 7.73853 8.14738 8.26546 8.45842 8.75569 9.18585 9.77062 10.39526 11.21854 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.004803 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.701067 B = 5828.548477 C = 6629.064603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.509 3.491 3 O -0.525 6.525 4 N -0.726 5.726 5 C 0.157 3.843 6 C 0.522 3.478 7 O -0.550 6.550 8 N -0.691 5.691 9 C 0.133 3.867 10 H 0.074 0.926 11 C -0.120 4.120 12 C -0.140 4.140 13 C 0.172 3.828 14 N -0.586 5.586 15 C -0.254 4.254 16 H 0.064 0.936 17 C 0.013 3.987 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.160 3.840 24 H 0.038 0.962 25 C -0.128 4.128 26 C -0.116 4.116 27 C -0.123 4.123 28 C -0.121 4.121 29 C -0.118 4.118 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.403 0.597 34 H 0.405 0.595 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.016 0.984 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.038 0.962 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.080 0.920 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -3.175 15.455 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.296 3.704 3 O -0.400 6.400 4 N -0.382 5.382 5 C 0.068 3.932 6 C 0.306 3.694 7 O -0.428 6.428 8 N -0.341 5.341 9 C 0.027 3.973 10 H 0.092 0.908 11 C -0.159 4.159 12 C -0.179 4.179 13 C 0.047 3.953 14 N -0.310 5.310 15 C -0.383 4.383 16 H 0.081 0.919 17 C -0.186 4.186 18 N -0.542 5.542 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.053 3.947 24 H 0.055 0.945 25 C -0.186 4.186 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.158 4.158 29 C -0.156 4.156 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.239 0.761 34 H 0.241 0.759 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.099 0.901 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.625 -2.012 15.385 15.736 hybrid contribution -1.657 -0.869 -0.424 1.919 sum 0.968 -2.880 14.961 15.266 Atomic orbital electron populations 1.21938 0.91567 1.05644 1.04363 1.20855 0.90660 0.83522 0.75344 1.90786 1.70503 1.31091 1.47631 1.46325 1.06127 1.09424 1.76310 1.21193 0.80286 0.96527 0.95197 1.20324 0.84376 0.80882 0.83852 1.90618 1.26526 1.41837 1.83775 1.45806 1.25907 1.55109 1.07273 1.21500 0.94436 0.94968 0.86415 0.90807 1.21776 0.97194 0.97387 0.99537 1.22164 0.99079 0.95781 1.00879 1.20838 0.89315 0.94215 0.90952 1.44065 1.02572 1.12226 1.72121 1.19048 0.82956 1.35291 1.01048 0.91858 1.25358 0.97384 1.00656 0.95207 1.69934 1.33842 1.41069 1.09379 0.86309 0.85969 0.77352 0.77624 1.20256 1.21585 1.21744 1.20743 0.92469 0.89009 0.92517 0.94494 1.21698 0.98806 0.97825 1.00271 1.22623 1.03513 0.97530 0.91766 1.22512 1.00559 0.95327 0.97650 1.22344 1.00191 0.99160 0.94135 1.22352 1.00987 0.92762 0.99493 0.89639 0.88990 0.88884 0.76148 0.75902 0.93441 0.91997 0.93637 0.93122 0.96565 0.89295 0.93608 0.94286 0.92084 0.93099 0.88856 0.90706 0.91588 0.91234 0.91151 0.91040 0.90117 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 10.32 36.00 0.37 -1.36 16 2 C 0.51 6.85 6.88 -10.99 -0.08 6.77 16 3 O -0.53 -9.43 14.95 5.56 0.08 -9.35 16 4 N -0.73 -8.34 4.38 -47.64 -0.21 -8.55 16 5 C 0.16 2.09 0.87 -131.85 -0.12 1.98 16 6 C 0.52 9.16 5.00 -10.98 -0.05 9.10 16 7 O -0.55 -11.41 15.20 5.56 0.08 -11.33 16 8 N -0.69 -12.29 3.27 -53.69 -0.18 -12.46 16 9 C 0.13 2.55 2.36 -67.81 -0.16 2.39 16 10 H 0.07 1.50 7.52 -51.93 -0.39 1.11 16 11 C -0.12 -2.20 5.58 -26.69 -0.15 -2.35 16 12 C -0.14 -2.63 5.93 -26.61 -0.16 -2.79 16 13 C 0.17 3.90 5.22 -3.71 -0.02 3.88 16 14 N -0.59 -13.45 2.64 -164.78 -0.43 -13.89 16 15 C -0.25 -6.25 8.37 -15.06 -0.13 -6.38 16 16 H 0.06 1.53 6.45 -52.49 -0.34 1.19 16 17 C 0.01 0.35 5.25 -17.44 -0.09 0.26 16 18 N -0.90 -24.58 10.92 55.49 0.61 -23.97 16 19 Si 0.90 20.23 29.55 -169.99 -5.02 15.21 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.16 3.31 3.20 -67.60 -0.22 3.10 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 25 C -0.13 -2.54 7.80 37.16 0.29 -2.25 16 26 C -0.12 -1.52 5.56 -25.07 -0.14 -1.66 16 27 C -0.12 -1.17 6.91 -24.74 -0.17 -1.34 16 28 C -0.12 -1.11 6.83 -25.07 -0.17 -1.29 16 29 C -0.12 -1.27 6.24 -25.61 -0.16 -1.43 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 32 H 0.09 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.40 3.44 8.07 -40.82 -0.33 3.11 16 34 H 0.40 7.29 7.04 -40.82 -0.29 7.01 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.95 7.53 -51.93 -0.39 0.56 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 2.25 6.22 -51.93 -0.32 1.93 16 41 H 0.25 6.77 8.31 -40.82 -0.34 6.44 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.26 7.71 -51.93 -0.40 0.86 16 44 H 0.05 1.01 6.35 -51.93 -0.33 0.68 16 45 H 0.09 1.45 6.80 -51.93 -0.35 1.09 16 46 H 0.07 1.06 6.63 -51.93 -0.34 0.72 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.08 0.70 7.44 -51.93 -0.39 0.31 16 52 H 0.08 0.98 7.67 -51.93 -0.40 0.58 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -31.14 394.09 -9.18 -40.32 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -8.90 Total: 11.44 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.15 Total: 6.63 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.21 Total: -58.86 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: 0.17 Total: -20.67 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.14 -9.18 -40.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486182002.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.195 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds