Wall clock time and date at job start Tue Mar 31 2020 20:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99522 * 2 1 4 4 N 1.34772 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00204 * 185.05361 * 4 2 1 6 6 C 1.50696 * 110.01732 * 296.80365 * 5 4 2 7 7 O 1.21274 * 120.00574 * 143.68892 * 6 5 4 8 8 N 1.34777 * 119.99692 * 323.69001 * 6 5 4 9 9 C 1.46506 * 120.00107 * 185.03127 * 8 6 5 10 10 H 1.09006 * 109.49142 * 325.06163 * 9 8 6 11 11 C 1.53032 * 109.52580 * 85.13927 * 9 8 6 12 12 C 1.53355 * 109.60765 * 181.34228 * 11 9 8 13 13 C 1.53188 * 109.15213 * 298.71630 * 12 11 9 14 14 N 1.46931 * 108.89259 * 54.57257 * 13 12 11 15 15 C 1.36940 * 120.62690 * 126.29817 * 14 13 12 16 16 H 1.08000 * 120.00092 * 212.12445 * 15 14 13 17 17 C 1.38810 * 120.00026 * 32.13121 * 15 14 13 18 18 N 1.31626 * 120.00033 * 10.15560 * 17 15 14 19 19 Si 1.86796 * 120.00084 * 190.15236 * 17 15 14 20 20 H 1.48505 * 109.47153 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47277 * 119.99774 * 19 17 15 22 22 H 1.48497 * 109.47342 * 240.00129 * 19 17 15 23 23 C 1.46925 * 118.74208 * 306.32392 * 14 13 12 24 24 H 1.08998 * 109.58790 * 293.67669 * 23 14 13 25 25 C 1.52996 * 109.58682 * 173.39333 * 23 14 13 26 26 C 1.54270 * 110.06886 * 58.21838 * 5 4 2 27 27 C 1.54888 * 104.19457 * 95.70128 * 26 5 4 28 28 C 1.54889 * 102.74931 * 37.94002 * 27 26 5 29 29 C 1.53871 * 110.03283 * 175.40836 * 5 4 2 30 30 H 1.08997 * 109.47106 * 269.99507 * 1 2 3 31 31 H 1.09003 * 109.47568 * 29.99400 * 1 2 3 32 32 H 1.08999 * 109.47279 * 149.99404 * 1 2 3 33 33 H 0.97002 * 120.00158 * 5.04730 * 4 2 1 34 34 H 0.97001 * 120.00596 * 5.02809 * 8 6 5 35 35 H 1.08999 * 109.46508 * 301.35633 * 11 9 8 36 36 H 1.09001 * 109.45962 * 61.32901 * 11 9 8 37 37 H 1.08996 * 109.68457 * 178.74665 * 12 11 9 38 38 H 1.09007 * 109.47115 * 58.55471 * 12 11 9 39 39 H 1.09006 * 109.58413 * 294.72177 * 13 12 11 40 40 H 1.08995 * 109.58924 * 174.43416 * 13 12 11 41 41 H 0.97001 * 119.99609 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.47186 * 60.00150 * 25 23 14 43 43 H 1.09004 * 109.46796 * 180.02562 * 25 23 14 44 44 H 1.09003 * 109.47563 * 299.99777 * 25 23 14 45 45 H 1.09007 * 110.48291 * 214.37237 * 26 5 4 46 46 H 1.08994 * 110.49333 * 337.01836 * 26 5 4 47 47 H 1.08996 * 110.75557 * 279.62206 * 27 26 5 48 48 H 1.08996 * 110.75483 * 156.25475 * 27 26 5 49 49 H 1.09007 * 110.48286 * 203.38076 * 28 27 26 50 50 H 1.08993 * 110.48505 * 80.74000 * 28 27 26 51 51 H 1.09001 * 110.03504 * 359.95129 * 29 5 4 52 52 H 1.09001 * 110.03114 * 121.33725 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6416 -1.1697 0.1112 6 6 4.2513 -0.4765 -1.0799 7 8 5.2477 0.2012 -0.9428 8 7 3.6892 -0.6096 -2.2976 9 6 4.3418 -0.0279 -3.4732 10 1 4.8285 0.9066 -3.1939 11 6 5.3868 -1.0061 -4.0145 12 6 6.0945 -0.3852 -5.2251 13 6 5.0640 -0.1160 -6.3261 14 7 3.9795 0.7060 -5.7720 15 6 3.6150 1.8795 -6.3764 16 1 3.2461 2.7017 -5.7811 17 6 3.7194 2.0123 -7.7541 18 7 3.9749 0.9579 -8.4994 19 14 3.4972 3.6873 -8.5506 20 1 3.2211 4.7015 -7.5015 21 1 4.7362 4.0563 -9.2812 22 1 2.3582 3.6359 -9.5020 23 6 3.2940 0.2453 -4.5569 24 1 2.7421 -0.6693 -4.7732 25 6 2.3256 1.3265 -4.0731 26 6 4.0742 -0.4629 1.4125 27 6 4.2659 -1.6181 2.4264 28 6 4.8909 -2.7366 1.5561 29 6 4.1608 -2.6153 0.2026 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6988 -2.0056 -0.0748 34 1 2.8526 -1.0906 -2.3957 35 1 6.1200 -1.2213 -3.2372 36 1 4.8960 -1.9312 -4.3168 37 1 6.8545 -1.0718 -5.5981 38 1 6.5647 0.5528 -4.9295 39 1 4.6584 -1.0615 -6.6861 40 1 5.5402 0.4148 -7.1504 41 1 4.0475 1.0507 -9.4623 42 1 1.5886 1.5283 -4.8504 43 1 1.8185 0.9829 -3.1714 44 1 2.8801 2.2386 -3.8525 45 1 5.0119 0.0723 1.2623 46 1 3.2952 0.2187 1.7537 47 1 3.3069 -1.9367 2.8348 48 1 4.9476 -1.3228 3.2240 49 1 4.7077 -3.7142 2.0021 50 1 5.9603 -2.5685 1.4292 51 1 3.3259 -3.3150 0.1647 52 1 4.8531 -2.8157 -0.6151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486182003.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:48 Heat of formation + Delta-G solvation = -62.510406 kcal Electronic energy + Delta-G solvation = -31989.523357 eV Core-core repulsion = 27988.880584 eV Total energy + Delta-G solvation = -4000.642773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.02997 -39.01824 -37.99785 -36.88605 -34.39893 -33.75814 -32.46774 -31.60014 -30.45979 -29.26939 -28.89556 -27.62820 -26.11354 -24.95730 -22.84700 -21.75461 -21.26108 -20.64191 -20.37213 -19.65187 -19.05683 -17.69722 -17.00645 -16.42241 -16.10333 -15.66603 -15.34483 -15.17284 -14.79561 -14.39370 -14.20384 -13.77871 -13.70809 -13.60073 -13.28634 -13.27672 -12.97238 -12.75669 -12.54670 -12.48819 -12.19235 -11.80249 -11.65158 -11.48506 -11.47295 -11.44982 -11.19870 -11.03467 -10.88488 -10.82803 -10.72257 -10.50948 -10.27021 -10.17360 -10.02227 -9.97653 -9.90977 -9.70206 -9.39035 -8.95831 -8.56230 -8.42490 -6.59549 -5.76607 -3.24962 2.48822 2.70790 3.08948 3.38508 3.42983 3.46861 3.50361 4.25502 4.30413 4.50490 4.61445 4.66091 4.97447 5.00723 5.12502 5.16319 5.20701 5.25918 5.35189 5.40181 5.45034 5.50570 5.56992 5.59822 5.65358 5.66564 5.77007 5.80486 5.83140 5.99324 6.01464 6.13295 6.20064 6.26986 6.31698 6.40927 6.49619 6.58585 6.68436 6.77708 6.80958 6.90472 7.05951 7.14714 7.25867 7.43982 7.72207 7.84495 7.85966 8.06877 8.48555 8.55595 9.24252 9.85156 10.42886 11.31686 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.003430 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.777632 B = 8161.489365 C = 9117.195403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.520 6.520 4 N -0.727 5.727 5 C 0.156 3.844 6 C 0.522 3.478 7 O -0.534 6.534 8 N -0.712 5.712 9 C 0.131 3.869 10 H 0.085 0.915 11 C -0.115 4.115 12 C -0.141 4.141 13 C 0.170 3.830 14 N -0.582 5.582 15 C -0.249 4.249 16 H 0.069 0.931 17 C 0.005 3.995 18 N -0.905 5.905 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.170 3.830 24 H 0.024 0.976 25 C -0.132 4.132 26 C -0.118 4.118 27 C -0.123 4.123 28 C -0.121 4.121 29 C -0.118 4.118 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.401 0.599 34 H 0.391 0.609 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.089 0.911 41 H 0.253 0.747 42 H 0.062 0.938 43 H 0.036 0.964 44 H 0.053 0.947 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 -11.583 19.937 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.292 3.708 3 O -0.395 6.395 4 N -0.383 5.383 5 C 0.066 3.934 6 C 0.306 3.694 7 O -0.410 6.410 8 N -0.361 5.361 9 C 0.025 3.975 10 H 0.103 0.897 11 C -0.154 4.154 12 C -0.181 4.181 13 C 0.045 3.955 14 N -0.305 5.305 15 C -0.379 4.379 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.062 3.938 24 H 0.042 0.958 25 C -0.189 4.189 26 C -0.156 4.156 27 C -0.161 4.161 28 C -0.159 4.159 29 C -0.156 4.156 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.224 0.776 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.098 0.902 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.940 -10.288 19.820 22.676 hybrid contribution -0.814 0.046 -0.680 1.062 sum -4.754 -10.242 19.140 22.223 Atomic orbital electron populations 1.21895 0.91470 1.05205 1.04610 1.20903 0.90680 0.83578 0.75632 1.90828 1.70400 1.31076 1.47160 1.46375 1.06139 1.09294 1.76512 1.21246 0.80193 0.96838 0.95084 1.20370 0.84391 0.80617 0.84026 1.90670 1.26523 1.38949 1.84850 1.45983 1.26181 1.56823 1.07099 1.21756 0.94815 0.96618 0.84302 0.89678 1.21809 0.97584 0.98223 0.97772 1.22251 0.99128 0.99656 0.97023 1.20835 0.87047 0.94246 0.93392 1.44011 1.36296 1.23864 1.26360 1.19216 1.39528 0.90108 0.89024 0.91324 1.25164 1.00710 0.96990 0.96476 1.69996 1.53149 1.27378 1.04380 0.86212 0.77377 0.83887 0.79275 1.20181 1.21581 1.21695 1.20544 0.90719 0.95470 0.87072 0.95824 1.21765 0.99155 0.99098 0.98925 1.22646 1.03794 0.97571 0.91619 1.22516 1.00611 0.95272 0.97664 1.22349 1.00328 0.99041 0.94188 1.22363 1.00935 0.92669 0.99624 0.88961 0.88646 0.90134 0.76296 0.77554 0.93481 0.92896 0.93027 0.92566 0.96395 0.89272 0.93736 0.91946 0.94520 0.92759 0.88712 0.90379 0.91596 0.91098 0.91089 0.90909 0.90179 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.31 36.01 0.37 -0.82 16 2 C 0.51 5.59 7.05 -10.99 -0.08 5.51 16 3 O -0.52 -8.60 14.86 5.55 0.08 -8.52 16 4 N -0.73 -6.34 4.39 -47.64 -0.21 -6.55 16 5 C 0.16 1.77 0.87 -131.85 -0.11 1.66 16 6 C 0.52 8.44 5.20 -10.99 -0.06 8.38 16 7 O -0.53 -10.93 15.17 5.56 0.08 -10.85 16 8 N -0.71 -11.20 4.50 -53.69 -0.24 -11.44 16 9 C 0.13 2.52 2.04 -67.81 -0.14 2.38 16 10 H 0.09 1.96 7.51 -51.93 -0.39 1.57 16 11 C -0.12 -2.13 5.46 -26.53 -0.14 -2.28 16 12 C -0.14 -2.86 6.11 -26.45 -0.16 -3.02 16 13 C 0.17 4.10 5.24 -3.71 -0.02 4.09 16 14 N -0.58 -14.57 2.98 -164.78 -0.49 -15.06 16 15 C -0.25 -6.80 8.52 -15.06 -0.13 -6.93 16 16 H 0.07 1.87 6.29 -52.49 -0.33 1.54 16 17 C 0.01 0.14 5.05 -17.43 -0.09 0.05 16 18 N -0.90 -26.06 11.08 55.49 0.61 -25.44 16 19 Si 0.90 21.92 29.57 -169.99 -5.03 16.89 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.17 3.57 3.03 -67.60 -0.21 3.37 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 C -0.13 -2.66 7.85 37.16 0.29 -2.37 16 26 C -0.12 -1.42 5.52 -25.07 -0.14 -1.56 16 27 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 28 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 29 C -0.12 -1.00 6.23 -25.62 -0.16 -1.16 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.40 2.00 8.08 -40.82 -0.33 1.67 16 34 H 0.39 5.22 7.96 -40.82 -0.33 4.89 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 2.40 6.14 -51.93 -0.32 2.08 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 42 H 0.06 1.31 7.65 -51.93 -0.40 0.91 16 43 H 0.04 0.64 7.80 -51.93 -0.41 0.24 16 44 H 0.05 1.19 7.43 -51.93 -0.39 0.80 16 45 H 0.09 1.40 6.79 -51.92 -0.35 1.05 16 46 H 0.08 1.03 6.35 -51.93 -0.33 0.70 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.08 0.45 7.45 -51.93 -0.39 0.07 16 52 H 0.08 0.78 7.67 -51.93 -0.40 0.38 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -34.59 397.36 -9.29 -43.88 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.98 Total: 6.09 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.11 Total: 5.01 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.33 Total: -58.49 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.17 Total: -19.37 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.59 -9.29 -43.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486182003.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.629 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds