Wall clock time and date at job start Tue Mar 31 2020 19:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.45673 * 2 1 4 4 C 1.53038 * 109.46401 * 240.02674 * 2 1 3 5 5 C 1.53117 * 109.28107 * 180.80435 * 4 2 1 6 6 H 1.09000 * 109.52132 * 177.56061 * 5 4 2 7 7 N 1.46498 * 109.57595 * 297.71819 * 5 4 2 8 8 C 1.34773 * 120.00166 * 204.83646 * 7 5 4 9 9 O 1.21284 * 119.99768 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00199 * 180.02562 * 8 7 5 11 11 C 1.53000 * 109.47267 * 185.54580 * 10 8 7 12 12 C 1.53001 * 115.54921 * 279.63278 * 11 10 8 13 13 C 1.52999 * 117.49962 * 133.92074 * 11 10 8 14 14 C 1.52996 * 60.00288 * 252.50960 * 13 11 10 15 15 C 1.53119 * 109.15771 * 57.65483 * 5 4 2 16 16 C 1.53034 * 109.28057 * 302.34557 * 15 5 4 17 17 N 1.46843 * 109.52340 * 59.17829 * 16 15 5 18 18 C 1.46899 * 110.99948 * 174.16015 * 17 16 15 19 19 C 1.50699 * 109.47304 * 66.04957 * 18 17 16 20 20 O 1.21296 * 119.99624 * 359.97438 * 19 18 17 21 21 N 1.34768 * 120.00448 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00219 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00000 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00022 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99899 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00000 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47189 * 60.00376 * 26 24 22 28 28 H 1.48500 * 109.47221 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47496 * 300.00609 * 26 24 22 30 30 H 1.09000 * 109.47221 * 300.02539 * 1 2 3 31 31 H 1.09003 * 109.47076 * 60.02100 * 1 2 3 32 32 H 1.08999 * 109.46929 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50080 * 60.86263 * 4 2 1 34 34 H 1.09003 * 109.50413 * 300.75087 * 4 2 1 35 35 H 0.97002 * 119.99737 * 24.84429 * 7 5 4 36 36 H 1.08999 * 109.46967 * 305.54174 * 10 8 7 37 37 H 1.08996 * 109.47065 * 65.54678 * 10 8 7 38 38 H 1.08991 * 109.47266 * 65.00207 * 12 11 10 39 39 H 1.09000 * 109.46843 * 185.00325 * 12 11 10 40 40 H 1.08998 * 109.46722 * 304.99802 * 12 11 10 41 41 H 1.08997 * 117.50055 * 0.02562 * 13 11 10 42 42 H 1.09001 * 117.49693 * 145.02199 * 13 11 10 43 43 H 1.08997 * 117.50138 * 252.50937 * 14 13 11 44 44 H 1.09004 * 117.51662 * 107.48208 * 14 13 11 45 45 H 1.09003 * 109.50448 * 62.29219 * 15 5 4 46 46 H 1.09002 * 109.50097 * 182.36454 * 15 5 4 47 47 H 1.08998 * 109.46306 * 179.19830 * 16 15 5 48 48 H 1.09002 * 109.46255 * 299.17211 * 16 15 5 49 49 H 1.09005 * 109.47279 * 186.04833 * 18 17 16 50 50 H 1.09001 * 109.47344 * 306.04454 * 18 17 16 51 51 H 0.97005 * 119.99802 * 359.97438 * 21 19 18 52 52 H 0.96995 * 119.99558 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7360 -1.2356 6 1 3.9379 -1.2863 -2.1020 7 7 4.0758 0.6385 -1.2788 8 6 5.3068 0.8892 -1.7670 9 8 5.9963 -0.0231 -2.1710 10 6 5.8264 2.3031 -1.8109 11 6 7.1768 2.3281 -2.5298 12 6 8.3824 1.9137 -1.6838 13 6 7.3943 3.4123 -3.5872 14 6 7.1941 1.9568 -4.0140 15 6 4.0547 -1.4188 0.0467 16 6 3.4864 -0.6777 1.2591 17 7 2.0193 -0.6917 1.1993 18 6 1.4373 -0.1106 2.4165 19 6 1.7792 1.3554 2.4864 20 8 2.4429 1.8658 1.6087 21 7 1.3485 2.0992 3.5244 22 6 1.6601 3.4328 3.5882 23 1 2.2503 3.8874 2.8063 24 6 1.2155 4.1997 4.6582 25 7 0.4969 3.6466 5.6093 26 14 1.6406 6.0166 4.7454 27 1 1.0911 6.7113 3.5534 28 1 1.0526 6.6040 5.9761 29 1 3.1164 6.1788 4.7763 30 1 -0.3634 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6895 -0.1981 -2.1399 34 1 1.6658 -1.7447 -1.2577 35 1 3.5242 1.3682 -0.9560 36 1 5.1177 2.9341 -2.3472 37 1 5.9489 2.6769 -0.7944 38 1 8.2854 0.8653 -1.4021 39 1 9.2963 2.0516 -2.2616 40 1 8.4244 2.5291 -0.7852 41 1 6.5755 4.1081 -3.7704 42 1 8.3965 3.8307 -3.6802 43 1 8.0645 1.4176 -4.3878 44 1 6.2434 1.6943 -4.4782 45 1 3.7125 -2.4536 0.0594 46 1 5.1439 -1.3953 0.0828 47 1 3.8174 -1.1699 2.1735 48 1 3.8402 0.3533 1.2531 49 1 0.3541 -0.2303 2.3943 50 1 1.8413 -0.6200 3.2914 51 1 0.8181 1.6909 4.2265 52 1 0.1869 4.1819 6.3564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502948113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:50 Heat of formation + Delta-G solvation = -52.104081 kcal Electronic energy + Delta-G solvation = -31140.328564 eV Core-core repulsion = 27140.137043 eV Total energy + Delta-G solvation = -4000.191521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.38654 -39.36392 -37.90462 -37.00957 -34.64988 -33.83029 -32.11170 -31.71061 -31.29959 -29.47165 -28.12968 -27.17818 -26.57752 -24.54952 -22.72616 -22.47160 -21.59075 -20.98086 -19.43608 -18.98831 -18.71696 -17.82539 -16.88605 -16.15763 -15.70997 -15.56547 -15.45225 -15.20264 -14.76031 -14.52296 -14.45562 -14.22376 -13.89849 -13.70846 -13.55960 -13.00954 -12.85022 -12.73497 -12.34088 -12.22435 -12.15242 -11.94078 -11.75704 -11.65579 -11.64596 -11.55178 -11.32030 -11.26203 -11.15586 -11.03596 -10.55244 -10.45163 -10.40404 -10.31379 -10.30721 -9.92277 -9.90893 -9.50907 -9.39025 -9.23050 -8.78298 -8.06284 -7.39186 -6.51430 -3.93134 2.87202 3.10980 3.18885 3.22071 3.30335 3.76553 3.86440 4.08773 4.29597 4.58433 4.72794 4.82502 4.88822 4.95069 4.98126 5.05407 5.14041 5.21636 5.23922 5.44510 5.46651 5.57968 5.61159 5.62896 5.70006 5.78395 5.81137 5.82371 5.87099 5.89653 5.92364 5.97850 6.01493 6.03551 6.06978 6.09866 6.15177 6.19730 6.23030 6.27848 6.35363 6.41962 6.56734 6.76559 6.78646 7.39218 7.44418 7.51272 7.77613 7.94417 8.46716 8.49664 9.06320 9.43049 9.92815 10.64865 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.003615 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.321857 B = 7743.500152 C = 9836.816473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 H 0.092 0.908 4 C -0.116 4.116 5 C 0.148 3.852 6 H 0.082 0.918 7 N -0.720 5.720 8 C 0.516 3.484 9 O -0.543 6.543 10 C -0.108 4.108 11 C -0.105 4.105 12 C -0.113 4.113 13 C -0.181 4.181 14 C -0.157 4.157 15 C -0.122 4.122 16 C 0.044 3.956 17 N -0.508 5.508 18 C 0.037 3.963 19 C 0.409 3.591 20 O -0.597 6.597 21 N -0.555 5.555 22 C -0.303 4.303 23 H 0.102 0.898 24 C 0.025 3.975 25 N -0.897 5.897 26 Si 0.929 3.071 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.408 0.592 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.091 0.909 50 H 0.085 0.915 51 H 0.393 0.607 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -5.869 -12.643 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.052 4.052 3 H 0.109 0.891 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.100 0.900 7 N -0.373 5.373 8 C 0.302 3.698 9 O -0.421 6.421 10 C -0.148 4.148 11 C -0.106 4.106 12 C -0.170 4.170 13 C -0.218 4.218 14 C -0.194 4.194 15 C -0.161 4.161 16 C -0.084 4.084 17 N -0.232 5.232 18 C -0.095 4.095 19 C 0.195 3.805 20 O -0.485 6.485 21 N -0.190 5.190 22 C -0.433 4.433 23 H 0.120 0.880 24 C -0.177 4.177 25 N -0.538 5.538 26 Si 0.756 3.244 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.244 0.756 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.109 0.891 50 H 0.103 0.897 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.190 -6.602 -13.353 16.131 hybrid contribution -0.322 1.893 0.994 2.163 sum 5.868 -4.709 -12.358 14.468 Atomic orbital electron populations 1.21857 0.95123 1.01488 1.01710 1.21964 0.94839 0.99254 0.89112 0.89064 1.21918 0.93699 1.02036 0.97813 1.20906 0.93689 0.82754 0.98308 0.90028 1.46241 1.17231 1.09988 1.63874 1.20545 0.81276 0.91174 0.76763 1.90649 1.56896 1.46692 1.47832 1.21232 0.95721 0.94679 1.03165 1.21011 0.95285 1.03489 0.90799 1.21296 0.94797 1.02113 0.98766 1.23177 1.02707 0.92170 1.03705 1.22847 1.02908 0.96872 0.96794 1.21918 1.00214 0.99551 0.94407 1.22170 0.87654 1.01351 0.97226 1.62432 1.07348 1.52206 1.01185 1.22104 1.01194 0.92232 0.93925 1.21055 0.85747 0.89139 0.84560 1.90315 1.44348 1.73799 1.39998 1.42059 1.46459 1.09540 1.20901 1.19641 1.31687 0.84287 1.07711 0.88013 1.25284 0.96465 1.00600 0.95370 1.69599 1.35675 1.37430 1.11092 0.85943 0.78869 0.81919 0.77642 1.19882 1.20891 1.19892 0.92369 0.92816 0.92564 0.91521 0.90323 0.75583 0.89194 0.88104 0.91391 0.92813 0.92443 0.88925 0.88877 0.89012 0.89279 0.91018 0.91577 0.91965 0.91257 0.89052 0.89660 0.77406 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.76 37.16 0.33 -1.66 16 2 C 0.06 0.83 1.80 -67.72 -0.12 0.71 16 3 H 0.09 1.61 3.86 -51.92 -0.20 1.41 16 4 C -0.12 -1.46 5.04 -26.65 -0.13 -1.59 16 5 C 0.15 1.99 2.80 -67.81 -0.19 1.80 16 6 H 0.08 1.13 7.58 -51.93 -0.39 0.73 16 7 N -0.72 -10.02 4.35 -53.69 -0.23 -10.26 16 8 C 0.52 7.40 7.65 -10.99 -0.08 7.31 16 9 O -0.54 -9.06 14.62 5.55 0.08 -8.98 16 10 C -0.11 -1.32 5.64 -27.88 -0.16 -1.47 16 11 C -0.11 -1.22 1.59 -154.51 -0.25 -1.47 16 12 C -0.11 -1.29 9.66 37.16 0.36 -0.93 16 13 C -0.18 -1.78 9.87 -26.73 -0.26 -2.04 16 14 C -0.16 -1.75 9.19 -26.73 -0.25 -2.00 16 15 C -0.12 -1.70 5.76 -26.65 -0.15 -1.86 16 16 C 0.04 0.69 4.95 -3.84 -0.02 0.68 16 17 N -0.51 -7.85 4.69 -228.13 -1.07 -8.92 16 18 C 0.04 0.62 5.30 -4.98 -0.03 0.60 16 19 C 0.41 8.66 7.04 -10.99 -0.08 8.58 16 20 O -0.60 -13.58 11.20 5.54 0.06 -13.51 16 21 N -0.55 -13.13 5.29 -10.97 -0.06 -13.19 16 22 C -0.30 -7.97 9.68 -14.93 -0.14 -8.11 16 23 H 0.10 2.78 7.16 -52.49 -0.38 2.40 16 24 C 0.03 0.65 5.50 -17.46 -0.10 0.55 16 25 N -0.90 -23.58 13.05 55.50 0.72 -22.86 16 26 Si 0.93 20.25 29.55 -169.99 -5.02 15.23 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 29 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 30 H 0.06 0.89 6.24 -51.93 -0.32 0.57 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.41 5.94 7.02 -40.82 -0.29 5.65 16 36 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 37 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.07 0.88 7.60 -51.93 -0.39 0.49 16 39 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 48 H 0.07 1.29 5.55 -51.93 -0.29 1.01 16 49 H 0.09 1.42 6.32 -51.93 -0.33 1.09 16 50 H 0.09 1.34 8.06 -51.93 -0.42 0.92 16 51 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 52 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -28.33 401.62 -9.53 -37.86 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -8.79 Total: 19.48 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.27 Total: -0.91 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.64 Total: -55.22 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.14 Total: -22.49 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.33 -9.53 -37.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502948113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.243 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds