Wall clock time and date at job start Tue Mar 31 2020 20:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.69966 * 2 1 4 4 C 1.53184 * 109.59007 * 239.64221 * 2 1 3 5 5 H 1.09002 * 109.52603 * 305.54843 * 4 2 1 6 6 N 1.46504 * 109.49899 * 65.62549 * 4 2 1 7 7 C 1.34778 * 120.00174 * 204.84398 * 6 4 2 8 8 O 1.21278 * 120.00116 * 359.97438 * 7 6 4 9 9 C 1.50697 * 119.99754 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47074 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47307 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47140 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99983 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99701 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00118 * 179.97438 * 13 12 11 16 16 C 1.52996 * 117.50058 * 248.75079 * 15 13 12 17 17 C 1.52995 * 117.49889 * 180.08484 * 15 13 12 18 18 C 1.53033 * 109.31663 * 185.57609 * 4 2 1 19 19 C 1.53043 * 109.53706 * 61.36419 * 18 4 2 20 20 C 1.53192 * 109.31621 * 298.63970 * 19 18 4 21 21 N 1.46928 * 108.77535 * 54.63043 * 20 19 18 22 22 C 1.36939 * 120.62962 * 126.12113 * 21 20 19 23 23 H 1.08001 * 119.99774 * 220.94669 * 22 21 20 24 24 C 1.38810 * 119.99742 * 40.93976 * 22 21 20 25 25 N 1.31617 * 119.99844 * 214.93099 * 24 22 21 26 26 Si 1.86795 * 120.00095 * 34.93492 * 24 22 21 27 27 H 1.48497 * 109.47312 * 84.63019 * 26 24 22 28 28 H 1.48502 * 109.47041 * 204.62791 * 26 24 22 29 29 H 1.48496 * 109.47194 * 324.62661 * 26 24 22 30 30 H 1.08997 * 109.46917 * 299.64393 * 1 2 3 31 31 H 1.08992 * 109.47035 * 59.64836 * 1 2 3 32 32 H 1.09004 * 109.46824 * 179.64916 * 1 2 3 33 33 H 0.97003 * 119.99517 * 24.83521 * 6 4 2 34 34 H 1.09007 * 109.47007 * 299.99284 * 9 7 6 35 35 H 1.08999 * 109.47610 * 59.99579 * 9 7 6 36 36 H 1.08998 * 109.47184 * 299.99889 * 10 9 7 37 37 H 1.09003 * 109.47381 * 59.99392 * 10 9 7 38 38 H 1.08998 * 109.47242 * 300.00263 * 11 10 9 39 39 H 1.08999 * 109.47159 * 60.00111 * 11 10 9 40 40 H 0.97001 * 120.00190 * 359.97438 * 12 11 10 41 41 H 1.09000 * 115.54352 * 34.41480 * 15 13 12 42 42 H 1.09006 * 117.49975 * 359.97438 * 16 15 13 43 43 H 1.09001 * 117.50336 * 145.01958 * 16 15 13 44 44 H 1.09000 * 117.50116 * 214.97956 * 17 15 13 45 45 H 1.08998 * 117.50260 * 359.97438 * 17 15 13 46 46 H 1.08998 * 109.46139 * 301.35216 * 18 4 2 47 47 H 1.08996 * 109.46557 * 181.38380 * 18 4 2 48 48 H 1.09002 * 109.50267 * 178.68116 * 19 18 4 49 49 H 1.09005 * 109.49451 * 58.58904 * 19 18 4 50 50 H 1.09004 * 109.57985 * 294.84511 * 20 19 18 51 51 H 1.08991 * 109.58912 * 174.42085 * 20 19 18 52 52 H 0.96992 * 120.00338 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7294 -1.2453 5 1 1.6031 -1.7253 -1.2918 6 7 1.6707 0.0266 -2.4435 7 6 1.5505 -0.6044 -3.6283 8 8 1.7516 -1.7981 -3.7027 9 6 1.1674 0.1734 -4.8608 10 6 1.1015 -0.7730 -6.0611 11 6 0.7119 0.0166 -7.3124 12 7 0.6495 -0.8895 -8.4619 13 6 0.3236 -0.4121 -9.6795 14 8 0.0826 0.7677 -9.8235 15 6 0.2600 -1.3441 -10.8620 16 6 1.3267 -1.1829 -11.9468 17 6 -0.1137 -0.7409 -12.2175 18 6 3.5675 -0.8479 -1.1700 19 6 3.9570 -1.6656 0.0636 20 6 3.4651 -0.9469 1.3239 21 7 2.0225 -0.6995 1.1946 22 6 1.1530 -1.1180 2.1662 23 1 0.2038 -1.5530 1.8904 24 6 1.4919 -0.9832 3.5056 25 7 1.1098 -1.8936 4.3759 26 14 2.4899 0.4904 4.0728 27 1 1.5803 1.6364 4.3265 28 1 3.2134 0.1465 5.3232 29 1 3.4696 0.8597 3.0197 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5192 -0.8867 32 1 -0.3633 -1.0277 -0.0063 33 1 1.5101 0.9814 -2.3840 34 1 0.1925 0.6371 -4.7094 35 1 1.9123 0.9467 -5.0487 36 1 2.0765 -1.2364 -6.2124 37 1 0.3569 -1.5466 -5.8736 38 1 -0.2631 0.4797 -7.1609 39 1 1.4564 0.7903 -7.5003 40 1 0.8434 -1.8330 -8.3469 41 1 -0.0902 -2.3536 -10.6465 42 1 2.0744 -0.4023 -11.8054 43 1 1.6781 -2.0862 -12.4455 44 1 -0.7094 -1.3538 -12.8941 45 1 -0.3139 0.3299 -12.2539 46 1 4.0062 0.1474 -1.0991 47 1 3.9379 -1.3448 -2.0667 48 1 5.0413 -1.7695 0.1039 49 1 3.4984 -2.6528 0.0054 50 1 3.9904 0.0021 1.4318 51 1 3.6518 -1.5716 2.1973 52 1 1.3462 -1.7993 5.3118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676874009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:27 Heat of formation + Delta-G solvation = -42.892514 kcal Electronic energy + Delta-G solvation = -28991.659858 eV Core-core repulsion = 24991.867781 eV Total energy + Delta-G solvation = -3999.792077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.31998 -39.87356 -37.94820 -36.85777 -35.70107 -34.36912 -33.03567 -32.67820 -31.72566 -30.02075 -27.78654 -26.28120 -24.93963 -24.40366 -22.90260 -22.59599 -21.76335 -20.83867 -20.48320 -20.10165 -19.46310 -17.83620 -17.19475 -16.51223 -16.34477 -16.10552 -15.84581 -15.57611 -15.04427 -14.85840 -14.49537 -14.40075 -14.13794 -13.73886 -13.56439 -13.48800 -13.13585 -12.96320 -12.61782 -12.47537 -12.42756 -12.01958 -11.94250 -11.86161 -11.78649 -11.41945 -11.23276 -11.16964 -11.09414 -10.97891 -10.78287 -10.60098 -10.41631 -10.36855 -10.23744 -10.10428 -9.87388 -9.60990 -9.50915 -9.44826 -8.77171 -8.38089 -6.77828 -6.11507 -3.42558 2.12098 2.69795 2.74863 3.33382 3.37577 3.40915 3.48513 3.52744 4.22760 4.33165 4.41280 4.48872 4.54795 4.65936 4.69315 4.69796 4.90183 5.06076 5.12749 5.17094 5.23676 5.26572 5.34306 5.36001 5.38034 5.46297 5.46982 5.60715 5.66126 5.77051 5.78264 5.88350 5.92379 6.06278 6.06856 6.22425 6.31241 6.32756 6.44546 6.51306 6.56332 6.65929 6.85932 6.88320 6.99685 7.09005 7.11341 7.67574 7.85437 7.99232 8.34640 8.40494 8.95545 9.67921 10.15436 11.03712 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.001706 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.682468 B =16411.704043 C =16620.927857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.163 3.837 3 H 0.029 0.971 4 C 0.131 3.869 5 H 0.088 0.912 6 N -0.720 5.720 7 C 0.511 3.489 8 O -0.544 6.544 9 C -0.138 4.138 10 C -0.115 4.115 11 C 0.118 3.882 12 N -0.725 5.725 13 C 0.541 3.459 14 O -0.542 6.542 15 C -0.197 4.197 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.117 4.117 19 C -0.135 4.135 20 C 0.141 3.859 21 N -0.590 5.590 22 C -0.278 4.278 23 H 0.077 0.923 24 C 0.052 3.948 25 N -0.878 5.878 26 Si 0.844 3.156 27 H -0.288 1.288 28 H -0.297 1.297 29 H -0.260 1.260 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.397 0.603 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.404 0.596 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.025 0.975 51 H 0.068 0.932 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 3.080 -27.463 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 H 0.046 0.954 4 C 0.025 3.975 5 H 0.107 0.893 6 N -0.370 5.370 7 C 0.296 3.704 8 O -0.421 6.421 9 C -0.179 4.179 10 C -0.154 4.154 11 C -0.006 4.006 12 N -0.377 5.377 13 C 0.328 3.672 14 O -0.420 6.420 15 C -0.218 4.218 16 C -0.190 4.190 17 C -0.185 4.185 18 C -0.156 4.156 19 C -0.174 4.174 20 C 0.016 3.984 21 N -0.314 5.314 22 C -0.406 4.406 23 H 0.094 0.906 24 C -0.151 4.151 25 N -0.516 5.516 26 Si 0.670 3.330 27 H -0.215 1.215 28 H -0.224 1.224 29 H -0.185 1.185 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.230 0.770 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.238 0.762 41 H 0.143 0.857 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.043 0.957 51 H 0.087 0.913 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.049 2.994 -27.376 27.559 hybrid contribution 0.589 0.830 0.763 1.272 sum 1.638 3.824 -26.613 26.936 Atomic orbital electron populations 1.21774 0.94987 1.02078 1.00260 1.20702 0.93896 0.93279 0.86488 0.95372 1.21718 0.94824 0.97082 0.83868 0.89342 1.46148 1.70174 1.12227 1.08473 1.20508 0.77068 0.88115 0.84661 1.90704 1.50377 1.15229 1.85806 1.21553 1.04076 0.99311 0.92964 1.21503 1.03779 0.98193 0.91877 1.21411 1.02149 0.92632 0.84378 1.45926 1.70916 1.12788 1.08045 1.19681 0.75963 0.88149 0.83417 1.90703 1.49209 1.17097 1.84961 1.22213 1.08751 1.00931 0.89933 1.22961 0.92632 1.03851 0.99578 1.22970 0.97700 1.02697 0.95169 1.21756 0.95668 0.99904 0.98258 1.22041 0.99361 1.00022 0.96006 1.21350 0.84620 0.96742 0.95702 1.44268 1.02450 1.65327 1.19357 1.18567 1.02250 1.35423 0.84311 0.90553 1.25548 0.96781 0.96881 0.95864 1.70080 1.46953 1.31033 1.03543 0.87368 0.80734 0.86743 0.78121 1.21540 1.22384 1.18522 0.91564 0.94317 0.92406 0.76988 0.88598 0.88734 0.90400 0.90306 0.91233 0.91349 0.76176 0.85749 0.88230 0.87676 0.87847 0.87379 0.92788 0.92822 0.92738 0.91723 0.95729 0.91337 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.95 37.16 0.30 -2.08 16 2 C 0.16 3.03 3.03 -67.60 -0.21 2.82 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.17 1.99 -67.82 -0.14 2.03 16 5 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 6 N -0.72 -9.16 4.59 -53.70 -0.25 -9.41 16 7 C 0.51 6.50 7.79 -10.99 -0.09 6.41 16 8 O -0.54 -9.17 15.65 5.56 0.09 -9.08 16 9 C -0.14 -1.12 5.70 -27.89 -0.16 -1.28 16 10 C -0.12 -0.92 4.62 -26.73 -0.12 -1.04 16 11 C 0.12 0.91 5.67 -4.04 -0.02 0.89 16 12 N -0.73 -5.42 5.56 -60.29 -0.33 -5.75 16 13 C 0.54 5.06 7.61 -10.99 -0.08 4.97 16 14 O -0.54 -7.18 16.26 5.56 0.09 -7.09 16 15 C -0.20 -1.26 6.19 -91.78 -0.57 -1.82 16 16 C -0.15 -0.82 10.24 -26.69 -0.27 -1.09 16 17 C -0.15 -0.90 10.05 -26.69 -0.27 -1.16 16 18 C -0.12 -1.91 5.46 -26.69 -0.15 -2.05 16 19 C -0.13 -2.40 6.08 -26.61 -0.16 -2.56 16 20 C 0.14 2.97 4.59 -3.71 -0.02 2.96 16 21 N -0.59 -13.32 2.47 -164.77 -0.41 -13.73 16 22 C -0.28 -7.36 8.43 -15.06 -0.13 -7.48 16 23 H 0.08 2.18 6.81 -52.49 -0.36 1.82 16 24 C 0.05 1.44 4.81 -17.43 -0.08 1.36 16 25 N -0.88 -25.79 13.97 55.49 0.78 -25.02 16 26 Si 0.84 20.79 27.38 -169.99 -4.65 16.14 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.26 -6.13 5.24 56.52 0.30 -5.84 16 30 H 0.07 1.28 7.68 -51.93 -0.40 0.88 16 31 H 0.04 0.55 7.80 -51.93 -0.41 0.14 16 32 H 0.06 1.12 7.41 -51.93 -0.38 0.74 16 33 H 0.40 3.95 8.60 -40.82 -0.35 3.60 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.40 2.12 8.47 -40.82 -0.35 1.78 16 41 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.11 0.83 7.67 -51.93 -0.40 0.43 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 50 H 0.02 0.52 6.72 -51.93 -0.35 0.17 16 51 H 0.07 1.57 6.98 -51.93 -0.36 1.21 16 52 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 411.63 15.07 6.20 6.20 Total: -1.00 -33.80 411.63 -9.98 -43.78 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -9.32 Total: 3.08 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.16 Total: 0.87 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.21 Total: -53.90 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.18 Total: -16.17 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.65 Total: 16.14 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.80 -9.98 -43.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676874009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.887 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds