Wall clock time and date at job start Tue Mar 31 2020 20:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.69966 * 2 1 4 4 C 1.53184 * 109.59007 * 239.64221 * 2 1 3 5 5 H 1.09002 * 109.52603 * 305.54843 * 4 2 1 6 6 N 1.46504 * 109.49899 * 65.62549 * 4 2 1 7 7 C 1.34778 * 120.00174 * 204.84398 * 6 4 2 8 8 O 1.21278 * 120.00116 * 359.97438 * 7 6 4 9 9 C 1.50697 * 119.99754 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47074 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47307 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47140 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99983 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99701 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00118 * 179.97438 * 13 12 11 16 16 C 1.52996 * 117.50058 * 248.75079 * 15 13 12 17 17 C 1.52995 * 117.49889 * 180.08484 * 15 13 12 18 18 C 1.53033 * 109.31663 * 185.57609 * 4 2 1 19 19 C 1.53043 * 109.53706 * 61.36419 * 18 4 2 20 20 C 1.53192 * 109.31621 * 298.63970 * 19 18 4 21 21 N 1.46928 * 108.77535 * 54.63043 * 20 19 18 22 22 C 1.36939 * 120.62962 * 126.12113 * 21 20 19 23 23 H 1.08001 * 119.99774 * 220.94669 * 22 21 20 24 24 C 1.38810 * 119.99742 * 40.93976 * 22 21 20 25 25 N 1.31617 * 119.99844 * 214.93099 * 24 22 21 26 26 Si 1.86795 * 120.00095 * 34.93492 * 24 22 21 27 27 H 1.48497 * 109.47312 * 84.63019 * 26 24 22 28 28 H 1.48502 * 109.47041 * 204.62791 * 26 24 22 29 29 H 1.48496 * 109.47194 * 324.62661 * 26 24 22 30 30 H 1.08997 * 109.46917 * 299.64393 * 1 2 3 31 31 H 1.08992 * 109.47035 * 59.64836 * 1 2 3 32 32 H 1.09004 * 109.46824 * 179.64916 * 1 2 3 33 33 H 0.97003 * 119.99517 * 24.83521 * 6 4 2 34 34 H 1.09007 * 109.47007 * 299.99284 * 9 7 6 35 35 H 1.08999 * 109.47610 * 59.99579 * 9 7 6 36 36 H 1.08998 * 109.47184 * 299.99889 * 10 9 7 37 37 H 1.09003 * 109.47381 * 59.99392 * 10 9 7 38 38 H 1.08998 * 109.47242 * 300.00263 * 11 10 9 39 39 H 1.08999 * 109.47159 * 60.00111 * 11 10 9 40 40 H 0.97001 * 120.00190 * 359.97438 * 12 11 10 41 41 H 1.09000 * 115.54352 * 34.41480 * 15 13 12 42 42 H 1.09006 * 117.49975 * 359.97438 * 16 15 13 43 43 H 1.09001 * 117.50336 * 145.01958 * 16 15 13 44 44 H 1.09000 * 117.50116 * 214.97956 * 17 15 13 45 45 H 1.08998 * 117.50260 * 359.97438 * 17 15 13 46 46 H 1.08998 * 109.46139 * 301.35216 * 18 4 2 47 47 H 1.08996 * 109.46557 * 181.38380 * 18 4 2 48 48 H 1.09002 * 109.50267 * 178.68116 * 19 18 4 49 49 H 1.09005 * 109.49451 * 58.58904 * 19 18 4 50 50 H 1.09004 * 109.57985 * 294.84511 * 20 19 18 51 51 H 1.08991 * 109.58912 * 174.42085 * 20 19 18 52 52 H 0.96992 * 120.00338 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7294 -1.2453 5 1 1.6031 -1.7253 -1.2918 6 7 1.6707 0.0266 -2.4435 7 6 1.5505 -0.6044 -3.6283 8 8 1.7516 -1.7981 -3.7027 9 6 1.1674 0.1734 -4.8608 10 6 1.1015 -0.7730 -6.0611 11 6 0.7119 0.0166 -7.3124 12 7 0.6495 -0.8895 -8.4619 13 6 0.3236 -0.4121 -9.6795 14 8 0.0826 0.7677 -9.8235 15 6 0.2600 -1.3441 -10.8620 16 6 1.3267 -1.1829 -11.9468 17 6 -0.1137 -0.7409 -12.2175 18 6 3.5675 -0.8479 -1.1700 19 6 3.9570 -1.6656 0.0636 20 6 3.4651 -0.9469 1.3239 21 7 2.0225 -0.6995 1.1946 22 6 1.1530 -1.1180 2.1662 23 1 0.2038 -1.5530 1.8904 24 6 1.4919 -0.9832 3.5056 25 7 1.1098 -1.8936 4.3759 26 14 2.4899 0.4904 4.0728 27 1 1.5803 1.6364 4.3265 28 1 3.2134 0.1465 5.3232 29 1 3.4696 0.8597 3.0197 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5192 -0.8867 32 1 -0.3633 -1.0277 -0.0063 33 1 1.5101 0.9814 -2.3840 34 1 0.1925 0.6371 -4.7094 35 1 1.9123 0.9467 -5.0487 36 1 2.0765 -1.2364 -6.2124 37 1 0.3569 -1.5466 -5.8736 38 1 -0.2631 0.4797 -7.1609 39 1 1.4564 0.7903 -7.5003 40 1 0.8434 -1.8330 -8.3469 41 1 -0.0902 -2.3536 -10.6465 42 1 2.0744 -0.4023 -11.8054 43 1 1.6781 -2.0862 -12.4455 44 1 -0.7094 -1.3538 -12.8941 45 1 -0.3139 0.3299 -12.2539 46 1 4.0062 0.1474 -1.0991 47 1 3.9379 -1.3448 -2.0667 48 1 5.0413 -1.7695 0.1039 49 1 3.4984 -2.6528 0.0054 50 1 3.9904 0.0021 1.4318 51 1 3.6518 -1.5716 2.1973 52 1 1.3462 -1.7993 5.3118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676874009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:25 Heat of formation + Delta-G solvation = -66.299672 kcal Electronic energy + Delta-G solvation = -28992.674868 eV Core-core repulsion = 24991.867781 eV Total energy + Delta-G solvation = -4000.807088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.13636 -40.89558 -39.36153 -37.41072 -36.44649 -35.81182 -34.42310 -33.69726 -33.45718 -31.52445 -28.69972 -27.67425 -26.67415 -25.18673 -23.87221 -23.30646 -22.65057 -22.34595 -21.41832 -21.21386 -20.71061 -18.49486 -18.38876 -18.03479 -17.34826 -17.05956 -16.90334 -16.48137 -16.25357 -16.09188 -15.76797 -15.42292 -15.20523 -15.15433 -14.85222 -14.69070 -14.47582 -14.32946 -13.74856 -13.53543 -13.48169 -13.23860 -13.09802 -12.94980 -12.71560 -12.62915 -12.47142 -12.44155 -12.37822 -12.01962 -11.86473 -11.81607 -11.72956 -11.54548 -11.54353 -11.45033 -11.26951 -10.98116 -10.77508 -10.47738 -10.12061 -9.94872 -8.64829 -8.24049 -5.51123 1.40164 1.46123 1.47138 1.55275 1.75686 2.03736 2.35979 2.49530 2.92606 2.96649 3.44400 3.68744 3.76408 3.87440 3.90481 3.98244 4.00045 4.03908 4.05099 4.15457 4.23082 4.30828 4.36888 4.48039 4.57628 4.59073 4.68078 4.74027 4.74475 4.75383 4.81568 4.92661 4.93277 5.01192 5.03464 5.08113 5.12371 5.14657 5.22032 5.23993 5.24137 5.29420 5.42952 5.45142 5.50917 5.66716 5.94992 6.27294 6.51582 6.69046 7.01881 7.20778 7.39178 7.66892 8.15820 8.95769 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.001706 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.682468 B =16411.704043 C =16620.927857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.160 3.840 3 H 0.053 0.947 4 C 0.144 3.856 5 H 0.050 0.950 6 N -0.710 5.710 7 C 0.509 3.491 8 O -0.589 6.589 9 C -0.129 4.129 10 C -0.105 4.105 11 C 0.123 3.877 12 N -0.718 5.718 13 C 0.534 3.466 14 O -0.589 6.589 15 C -0.202 4.202 16 C -0.143 4.143 17 C -0.155 4.155 18 C -0.109 4.109 19 C -0.128 4.128 20 C 0.138 3.862 21 N -0.604 5.604 22 C -0.262 4.262 23 H 0.041 0.959 24 C -0.001 4.001 25 N -0.929 5.929 26 Si 0.908 3.092 27 H -0.291 1.291 28 H -0.304 1.304 29 H -0.238 1.238 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.415 0.585 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.415 0.585 41 H 0.150 0.850 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.041 0.959 50 H 0.038 0.962 51 H 0.041 0.959 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 4.809 -29.958 30.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.071 0.929 4 C 0.038 3.962 5 H 0.068 0.932 6 N -0.362 5.362 7 C 0.297 3.703 8 O -0.469 6.469 9 C -0.169 4.169 10 C -0.143 4.143 11 C -0.001 4.001 12 N -0.369 5.369 13 C 0.322 3.678 14 O -0.470 6.470 15 C -0.223 4.223 16 C -0.180 4.180 17 C -0.192 4.192 18 C -0.148 4.148 19 C -0.167 4.167 20 C 0.013 3.987 21 N -0.329 5.329 22 C -0.391 4.391 23 H 0.058 0.942 24 C -0.200 4.200 25 N -0.571 5.571 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.232 1.232 29 H -0.162 1.162 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.252 0.748 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.252 0.748 41 H 0.168 0.832 42 H 0.106 0.894 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.060 0.940 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.426 4.750 -29.905 30.377 hybrid contribution 0.119 0.216 1.462 1.483 sum 2.545 4.967 -28.443 28.985 Atomic orbital electron populations 1.21696 0.94786 1.00593 1.01278 1.20889 0.94186 0.94064 0.85428 0.92940 1.21222 0.95001 0.95405 0.84620 0.93187 1.45948 1.70019 1.12913 1.07297 1.21298 0.75717 0.87768 0.85521 1.90697 1.52248 1.17504 1.86466 1.21578 1.06062 0.99107 0.90143 1.21377 1.03065 0.97915 0.91975 1.21331 1.01927 0.92571 0.84256 1.45915 1.69896 1.13441 1.07623 1.20231 0.75095 0.87969 0.84460 1.90677 1.51469 1.19128 1.85713 1.22310 1.09796 1.01330 0.88878 1.23045 0.91912 1.04405 0.98649 1.23018 0.98829 1.01824 0.95538 1.21689 0.95137 1.00681 0.97289 1.21937 1.00814 0.98679 0.95296 1.21375 0.83874 0.97133 0.96296 1.44386 1.02678 1.66156 1.19700 1.18414 1.01435 1.33976 0.85324 0.94184 1.26070 0.98964 0.98893 0.96053 1.70183 1.50170 1.32947 1.03790 0.86337 0.79586 0.82859 0.77760 1.21851 1.23168 1.16157 0.93436 0.90255 0.95216 0.74814 0.86282 0.85940 0.91038 0.91362 0.91551 0.91388 0.74821 0.83248 0.89391 0.85182 0.85699 0.89642 0.90604 0.92487 0.89982 0.94004 0.94391 0.94017 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 7.95 71.98 0.57 -3.82 16 2 C 0.16 5.66 3.03 44.97 0.14 5.80 16 3 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.14 4.55 1.99 45.06 0.09 4.64 16 5 H 0.05 1.99 7.58 -2.39 -0.02 1.98 16 6 N -0.71 -15.89 4.59 -442.18 -2.03 -17.92 16 7 C 0.51 11.70 7.79 87.66 0.68 12.38 16 8 O -0.59 -19.28 15.65 -3.02 -0.05 -19.33 16 9 C -0.13 -1.65 5.70 29.85 0.17 -1.48 16 10 C -0.10 -1.45 4.62 30.59 0.14 -1.31 16 11 C 0.12 1.67 5.67 86.38 0.49 2.16 16 12 N -0.72 -9.68 5.56 -463.05 -2.57 -12.25 16 13 C 0.53 9.51 7.61 87.66 0.67 10.18 16 14 O -0.59 -15.60 16.26 -3.02 -0.05 -15.65 16 15 C -0.20 -2.24 6.19 -11.54 -0.07 -2.31 16 16 C -0.14 -1.27 10.24 30.62 0.31 -0.96 16 17 C -0.15 -1.69 10.05 30.62 0.31 -1.38 16 18 C -0.11 -3.26 5.46 30.62 0.17 -3.10 16 19 C -0.13 -4.36 6.08 30.67 0.19 -4.17 16 20 C 0.14 5.64 4.59 86.36 0.40 6.04 16 21 N -0.60 -27.06 2.47 -675.22 -1.67 -28.73 16 22 C -0.26 -14.27 8.43 84.03 0.71 -13.57 16 23 H 0.04 2.43 6.81 -2.91 -0.02 2.41 16 24 C 0.00 -0.05 4.81 84.86 0.41 0.36 16 25 N -0.93 -56.71 13.97 21.65 0.30 -56.41 16 26 Si 0.91 43.34 27.38 68.60 1.88 45.21 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 28 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 29 H -0.24 -10.33 5.24 99.48 0.52 -9.81 16 30 H 0.05 1.82 7.68 -2.39 -0.02 1.80 16 31 H 0.08 2.07 7.80 -2.39 -0.02 2.05 16 32 H 0.03 1.17 7.41 -2.38 -0.02 1.15 16 33 H 0.41 6.40 8.60 -92.71 -0.80 5.60 16 34 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.42 3.64 8.47 -92.71 -0.79 2.86 16 41 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 43 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 1.34 7.67 -2.39 -0.02 1.32 16 46 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 50 H 0.04 1.47 6.72 -2.38 -0.02 1.45 16 51 H 0.04 1.91 6.98 -2.39 -0.02 1.89 16 52 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -77.73 411.63 0.33 -77.40 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -0.85 Total: 18.20 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 5.37 Total: 9.47 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -5.97 Total: -115.31 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.10 Total: -34.98 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.21 kcal Total: -77.73 0.33 -77.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676874009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.104 kcal (2) G-P(sol) polarization free energy of solvation -77.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds