Wall clock time and date at job start Tue Mar 31 2020 19:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21279 * 119.99998 * 2 1 4 4 N 1.34783 * 120.00086 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00110 * 184.69615 * 4 2 1 6 6 C 1.50699 * 110.01540 * 56.13595 * 5 4 2 7 7 O 1.21279 * 119.99933 * 213.77247 * 6 5 4 8 8 N 1.34775 * 120.00264 * 33.76920 * 6 5 4 9 9 C 1.46502 * 120.00437 * 174.99611 * 8 6 5 10 10 H 1.08997 * 109.45334 * 325.00152 * 9 8 6 11 11 C 1.53037 * 109.46043 * 84.97312 * 9 8 6 12 12 C 1.53193 * 109.31582 * 58.65479 * 11 9 8 13 13 N 1.46937 * 108.76948 * 54.63430 * 12 11 9 14 14 C 1.36938 * 120.62766 * 126.37226 * 13 12 11 15 15 H 1.07992 * 120.00000 * 213.65805 * 14 13 12 16 16 C 1.38811 * 119.99925 * 33.65235 * 14 13 12 17 17 N 1.31620 * 120.00456 * 8.19011 * 16 14 13 18 18 Si 1.86805 * 119.99851 * 188.18679 * 16 14 13 19 19 H 1.48499 * 109.46923 * 90.00367 * 18 16 14 20 20 H 1.48504 * 109.47016 * 210.00330 * 18 16 14 21 21 H 1.48495 * 109.47224 * 330.00193 * 18 16 14 22 22 C 1.46925 * 118.73882 * 306.39203 * 13 12 11 23 23 H 1.09001 * 109.58786 * 293.67766 * 22 13 12 24 24 C 1.52997 * 109.58376 * 173.39751 * 22 13 12 25 25 C 1.53039 * 109.46185 * 205.03087 * 9 8 6 26 26 C 1.53878 * 110.02937 * 294.69572 * 5 4 2 27 27 C 1.54264 * 106.59560 * 240.71008 * 26 5 4 28 28 C 1.54895 * 104.19621 * 23.61724 * 27 26 5 29 29 C 1.54259 * 110.03257 * 177.52868 * 5 4 2 30 30 H 1.09004 * 109.46844 * 239.99918 * 1 2 3 31 31 H 1.08999 * 109.47060 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47237 * 120.00464 * 1 2 3 33 33 H 0.97003 * 119.99522 * 4.97459 * 4 2 1 34 34 H 0.97004 * 119.99881 * 354.99992 * 8 6 5 35 35 H 1.08999 * 109.50136 * 178.60924 * 11 9 8 36 36 H 1.09004 * 109.49544 * 298.67506 * 11 9 8 37 37 H 1.08997 * 109.59448 * 174.42047 * 12 11 9 38 38 H 1.09001 * 109.58798 * 294.85445 * 12 11 9 39 39 H 0.97000 * 120.00530 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.47259 * 59.99936 * 24 22 13 41 41 H 1.08998 * 109.47159 * 180.02562 * 24 22 13 42 42 H 1.09005 * 109.47271 * 300.00231 * 24 22 13 43 43 H 1.08995 * 109.49729 * 61.29009 * 25 9 8 44 44 H 1.09000 * 109.49726 * 181.39114 * 25 9 8 45 45 H 1.08994 * 110.03375 * 359.97438 * 26 5 4 46 46 H 1.09003 * 110.02990 * 121.43426 * 26 5 4 47 47 H 1.09000 * 110.49311 * 264.93776 * 27 26 5 48 48 H 1.09004 * 110.48499 * 142.28452 * 27 26 5 49 49 H 1.08999 * 110.75436 * 203.74154 * 28 27 26 50 50 H 1.08995 * 110.75993 * 80.36370 * 28 27 26 51 51 H 1.08996 * 110.48468 * 214.35626 * 29 5 4 52 52 H 1.09007 * 110.48780 * 336.99522 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6422 -1.1694 0.1033 6 6 4.0722 -0.4305 1.3444 7 8 5.1037 0.2074 1.3435 8 7 3.3105 -0.4784 2.4552 9 6 3.7807 0.1475 3.6935 10 1 4.8629 0.0397 3.7666 11 6 3.4159 1.6337 3.6839 12 6 1.8973 1.7819 3.5465 13 7 1.2483 1.0079 4.6137 14 6 0.3365 1.5981 5.4476 15 1 0.2660 1.2849 6.4787 16 6 -0.4971 2.5989 4.9676 17 7 -0.5264 2.8698 3.6800 18 14 -1.5776 3.5611 6.1493 19 1 -0.8387 4.7535 6.6364 20 1 -2.8125 3.9961 5.4484 21 1 -1.9406 2.6985 7.3023 22 6 1.5966 -0.4109 4.7692 23 1 1.2521 -0.9693 3.8987 24 6 0.9327 -0.9666 6.0306 25 6 3.1182 -0.5342 4.8929 26 6 4.2602 -0.5124 -1.1433 27 6 5.1390 -1.5861 -1.8175 28 6 4.5414 -2.9285 -1.3277 29 6 4.1670 -2.6195 0.1432 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 1.6986 -2.0057 -0.0737 34 1 2.4509 -0.9275 2.4348 35 1 3.7435 2.0948 4.6157 36 1 3.9072 2.1235 2.8432 37 1 1.6228 2.8327 3.6385 38 1 1.5796 1.4027 2.5752 39 1 -1.1092 3.5689 3.3445 40 1 -0.1493 -0.8663 5.9460 41 1 1.1926 -2.0191 6.1445 42 1 1.2822 -0.4103 6.9004 43 1 3.3971 -1.5877 4.9123 44 1 3.4487 -0.0527 5.8133 45 1 3.4729 -0.1923 -1.8258 46 1 4.8719 0.3412 -0.8511 47 1 6.1754 -1.4893 -1.4938 48 1 5.0685 -1.5106 -2.9026 49 1 5.2851 -3.7237 -1.3781 50 1 3.6547 -3.1902 -1.9051 51 1 5.0463 -2.6895 0.7835 52 1 3.3872 -3.2981 0.4890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700317708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:46 Heat of formation + Delta-G solvation = -60.397145 kcal Electronic energy + Delta-G solvation = -32812.799145 eV Core-core repulsion = 28812.248010 eV Total energy + Delta-G solvation = -4000.551135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.86156 -38.82338 -37.95243 -36.78102 -34.27987 -33.54933 -32.24985 -31.13276 -30.05981 -29.41132 -28.88572 -27.40196 -26.31296 -24.90712 -22.60643 -21.72615 -21.13833 -20.79376 -20.55457 -19.31629 -18.54647 -17.48985 -16.75367 -16.35652 -15.89197 -15.35868 -15.07064 -15.04598 -14.76721 -14.20028 -14.16312 -13.86757 -13.63256 -13.49529 -13.27509 -13.06988 -12.58739 -12.54599 -12.39518 -12.18762 -11.89258 -11.77171 -11.56477 -11.44066 -11.36333 -11.31272 -11.17301 -11.09249 -10.93566 -10.66821 -10.63915 -10.56933 -10.37780 -10.07341 -10.01849 -9.81806 -9.59758 -9.54663 -9.25815 -8.80557 -8.46510 -8.38347 -6.50363 -5.71310 -3.22585 2.82801 2.93482 3.27860 3.38797 3.45599 3.46240 3.62325 4.37135 4.43095 4.50964 4.73377 5.02380 5.16104 5.29586 5.32152 5.36433 5.38764 5.41446 5.47905 5.51191 5.51841 5.55308 5.67821 5.67944 5.74253 5.74667 5.84132 5.94632 6.05451 6.14186 6.18234 6.24946 6.30694 6.33775 6.35270 6.45891 6.47247 6.52525 6.63681 6.78098 6.93196 7.00579 7.07615 7.16136 7.54034 7.57122 7.84821 7.89683 7.98020 8.43961 8.55145 8.64731 9.28882 9.90164 10.49518 11.35072 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.004103 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.832691 B = 6823.122387 C = 7469.158109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.509 3.491 3 O -0.512 6.512 4 N -0.734 5.734 5 C 0.158 3.842 6 C 0.523 3.477 7 O -0.542 6.542 8 N -0.705 5.705 9 C 0.155 3.845 10 H 0.068 0.932 11 C -0.153 4.153 12 C 0.180 3.820 13 N -0.586 5.586 14 C -0.253 4.253 15 H 0.065 0.935 16 C 0.009 3.991 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.171 3.829 23 H 0.014 0.986 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.114 4.114 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.118 4.118 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.400 0.600 34 H 0.397 0.603 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.026 0.974 39 H 0.252 0.748 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.084 0.916 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.614 -14.923 -8.905 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.296 3.704 3 O -0.385 6.385 4 N -0.391 5.391 5 C 0.069 3.931 6 C 0.308 3.692 7 O -0.418 6.418 8 N -0.356 5.356 9 C 0.051 3.949 10 H 0.086 0.914 11 C -0.193 4.193 12 C 0.055 3.945 13 N -0.310 5.310 14 C -0.383 4.383 15 H 0.083 0.917 16 C -0.191 4.191 17 N -0.542 5.542 18 Si 0.729 3.271 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.064 3.936 23 H 0.032 0.968 24 C -0.193 4.193 25 C -0.179 4.179 26 C -0.153 4.153 27 C -0.161 4.161 28 C -0.159 4.159 29 C -0.156 4.156 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.235 0.765 34 H 0.233 0.767 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.102 0.898 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.670 -13.531 -8.927 17.529 hybrid contribution -1.345 0.020 0.576 1.463 sum 5.325 -13.511 -8.351 16.752 Atomic orbital electron populations 1.21877 0.91067 1.06349 1.03547 1.20944 0.90805 0.83333 0.75341 1.90806 1.70366 1.30949 1.46384 1.46353 1.05755 1.09408 1.77572 1.21151 0.81095 0.96406 0.94488 1.20339 0.84121 0.80443 0.84341 1.90642 1.25922 1.41742 1.83522 1.46001 1.22126 1.56865 1.10587 1.20863 0.97480 0.93872 0.82687 0.91421 1.22533 1.01884 0.94186 1.00700 1.20697 0.85523 0.98297 0.90027 1.44106 1.46937 1.03001 1.36947 1.19096 1.10762 1.17046 0.91370 0.91736 1.25212 0.97500 1.01022 0.95334 1.69981 1.40141 1.32783 1.11254 0.86356 0.80137 0.80261 0.80333 1.21552 1.21797 1.20544 1.20336 0.90653 0.87551 0.95082 0.96818 1.21791 1.01676 0.97659 0.98165 1.22367 0.99151 0.98812 0.97526 1.22401 0.99440 0.99147 0.94310 1.22390 0.99665 0.94117 0.99952 1.22506 1.00822 0.97759 0.94780 1.22581 1.01841 0.92567 0.98610 0.89083 0.88404 0.90261 0.76517 0.76735 0.92367 0.92720 0.90012 0.95607 0.93746 0.91940 0.94515 0.92772 0.92884 0.90783 0.90992 0.89210 0.91233 0.91481 0.91063 0.91173 0.89772 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.32 36.00 0.37 -1.82 16 2 C 0.51 7.80 6.64 -10.98 -0.07 7.73 16 3 O -0.51 -10.50 15.04 5.56 0.08 -10.42 16 4 N -0.73 -8.54 4.34 -47.64 -0.21 -8.75 16 5 C 0.16 2.07 0.88 -131.85 -0.12 1.95 16 6 C 0.52 9.10 5.13 -10.99 -0.06 9.04 16 7 O -0.54 -11.28 15.24 5.56 0.08 -11.20 16 8 N -0.70 -12.08 3.96 -53.77 -0.21 -12.30 16 9 C 0.16 2.88 2.74 -67.89 -0.19 2.69 16 10 H 0.07 1.26 7.65 -51.93 -0.40 0.86 16 11 C -0.15 -3.33 5.77 -26.61 -0.15 -3.48 16 12 C 0.18 4.44 4.98 -3.70 -0.02 4.43 16 13 N -0.59 -14.06 2.98 -164.79 -0.49 -14.55 16 14 C -0.25 -6.66 8.47 -15.06 -0.13 -6.78 16 15 H 0.07 1.67 6.34 -52.49 -0.33 1.34 16 16 C 0.01 0.23 5.09 -17.43 -0.09 0.14 16 17 N -0.90 -25.64 11.08 55.49 0.62 -25.03 16 18 Si 0.90 21.53 29.56 -169.99 -5.03 16.51 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 C 0.17 3.34 3.19 -67.62 -0.22 3.12 16 23 H 0.01 0.28 6.65 -51.93 -0.35 -0.07 16 24 C -0.14 -2.42 7.98 37.16 0.30 -2.13 16 25 C -0.14 -2.38 5.07 -26.63 -0.13 -2.52 16 26 C -0.11 -1.56 5.23 -25.61 -0.13 -1.69 16 27 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 28 C -0.12 -0.97 6.91 -24.73 -0.17 -1.14 16 29 C -0.12 -1.12 5.99 -25.08 -0.15 -1.27 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.10 1.52 8.12 -51.93 -0.42 1.10 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 3.17 8.27 -40.82 -0.34 2.83 16 34 H 0.40 6.49 5.93 -40.82 -0.24 6.25 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.27 8.11 -51.93 -0.42 0.85 16 37 H 0.08 2.34 6.20 -51.93 -0.32 2.01 16 38 H 0.03 0.68 7.46 -51.93 -0.39 0.29 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 1.00 7.42 -51.93 -0.39 0.61 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.07 1.00 7.41 -51.93 -0.39 0.62 16 46 H 0.09 1.53 6.71 -51.93 -0.35 1.18 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16 52 H 0.08 0.58 7.76 -51.92 -0.40 0.18 16 LS Contribution 394.01 15.07 5.94 5.94 Total: -1.00 -33.20 394.01 -9.24 -42.44 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.90 Total: 10.49 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.13 Total: 6.87 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.29 Total: -60.62 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.17 Total: -21.61 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.20 -9.24 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700317708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.959 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds