Wall clock time and date at job start Tue Mar 31 2020 19:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21279 * 119.99998 * 2 1 4 4 N 1.34783 * 120.00086 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00110 * 184.69615 * 4 2 1 6 6 C 1.50699 * 110.01540 * 56.13595 * 5 4 2 7 7 O 1.21279 * 119.99933 * 213.77247 * 6 5 4 8 8 N 1.34775 * 120.00264 * 33.76920 * 6 5 4 9 9 C 1.46502 * 120.00437 * 174.99611 * 8 6 5 10 10 H 1.08997 * 109.45334 * 325.00152 * 9 8 6 11 11 C 1.53037 * 109.46043 * 84.97312 * 9 8 6 12 12 C 1.53193 * 109.31582 * 58.65479 * 11 9 8 13 13 N 1.46937 * 108.76948 * 54.63430 * 12 11 9 14 14 C 1.36938 * 120.62766 * 126.37226 * 13 12 11 15 15 H 1.07992 * 120.00000 * 213.65805 * 14 13 12 16 16 C 1.38811 * 119.99925 * 33.65235 * 14 13 12 17 17 N 1.31620 * 120.00456 * 8.19011 * 16 14 13 18 18 Si 1.86805 * 119.99851 * 188.18679 * 16 14 13 19 19 H 1.48499 * 109.46923 * 90.00367 * 18 16 14 20 20 H 1.48504 * 109.47016 * 210.00330 * 18 16 14 21 21 H 1.48495 * 109.47224 * 330.00193 * 18 16 14 22 22 C 1.46925 * 118.73882 * 306.39203 * 13 12 11 23 23 H 1.09001 * 109.58786 * 293.67766 * 22 13 12 24 24 C 1.52997 * 109.58376 * 173.39751 * 22 13 12 25 25 C 1.53039 * 109.46185 * 205.03087 * 9 8 6 26 26 C 1.53878 * 110.02937 * 294.69572 * 5 4 2 27 27 C 1.54264 * 106.59560 * 240.71008 * 26 5 4 28 28 C 1.54895 * 104.19621 * 23.61724 * 27 26 5 29 29 C 1.54259 * 110.03257 * 177.52868 * 5 4 2 30 30 H 1.09004 * 109.46844 * 239.99918 * 1 2 3 31 31 H 1.08999 * 109.47060 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47237 * 120.00464 * 1 2 3 33 33 H 0.97003 * 119.99522 * 4.97459 * 4 2 1 34 34 H 0.97004 * 119.99881 * 354.99992 * 8 6 5 35 35 H 1.08999 * 109.50136 * 178.60924 * 11 9 8 36 36 H 1.09004 * 109.49544 * 298.67506 * 11 9 8 37 37 H 1.08997 * 109.59448 * 174.42047 * 12 11 9 38 38 H 1.09001 * 109.58798 * 294.85445 * 12 11 9 39 39 H 0.97000 * 120.00530 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.47259 * 59.99936 * 24 22 13 41 41 H 1.08998 * 109.47159 * 180.02562 * 24 22 13 42 42 H 1.09005 * 109.47271 * 300.00231 * 24 22 13 43 43 H 1.08995 * 109.49729 * 61.29009 * 25 9 8 44 44 H 1.09000 * 109.49726 * 181.39114 * 25 9 8 45 45 H 1.08994 * 110.03375 * 359.97438 * 26 5 4 46 46 H 1.09003 * 110.02990 * 121.43426 * 26 5 4 47 47 H 1.09000 * 110.49311 * 264.93776 * 27 26 5 48 48 H 1.09004 * 110.48499 * 142.28452 * 27 26 5 49 49 H 1.08999 * 110.75436 * 203.74154 * 28 27 26 50 50 H 1.08995 * 110.75993 * 80.36370 * 28 27 26 51 51 H 1.08996 * 110.48468 * 214.35626 * 29 5 4 52 52 H 1.09007 * 110.48780 * 336.99522 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6422 -1.1694 0.1033 6 6 4.0722 -0.4305 1.3444 7 8 5.1037 0.2074 1.3435 8 7 3.3105 -0.4784 2.4552 9 6 3.7807 0.1475 3.6935 10 1 4.8629 0.0397 3.7666 11 6 3.4159 1.6337 3.6839 12 6 1.8973 1.7819 3.5465 13 7 1.2483 1.0079 4.6137 14 6 0.3365 1.5981 5.4476 15 1 0.2660 1.2849 6.4787 16 6 -0.4971 2.5989 4.9676 17 7 -0.5264 2.8698 3.6800 18 14 -1.5776 3.5611 6.1493 19 1 -0.8387 4.7535 6.6364 20 1 -2.8125 3.9961 5.4484 21 1 -1.9406 2.6985 7.3023 22 6 1.5966 -0.4109 4.7692 23 1 1.2521 -0.9693 3.8987 24 6 0.9327 -0.9666 6.0306 25 6 3.1182 -0.5342 4.8929 26 6 4.2602 -0.5124 -1.1433 27 6 5.1390 -1.5861 -1.8175 28 6 4.5414 -2.9285 -1.3277 29 6 4.1670 -2.6195 0.1432 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 1.6986 -2.0057 -0.0737 34 1 2.4509 -0.9275 2.4348 35 1 3.7435 2.0948 4.6157 36 1 3.9072 2.1235 2.8432 37 1 1.6228 2.8327 3.6385 38 1 1.5796 1.4027 2.5752 39 1 -1.1092 3.5689 3.3445 40 1 -0.1493 -0.8663 5.9460 41 1 1.1926 -2.0191 6.1445 42 1 1.2822 -0.4103 6.9004 43 1 3.3971 -1.5877 4.9123 44 1 3.4487 -0.0527 5.8133 45 1 3.4729 -0.1923 -1.8258 46 1 4.8719 0.3412 -0.8511 47 1 6.1754 -1.4893 -1.4938 48 1 5.0685 -1.5106 -2.9026 49 1 5.2851 -3.7237 -1.3781 50 1 3.6547 -3.1902 -1.9051 51 1 5.0463 -2.6895 0.7835 52 1 3.3872 -3.2981 0.4890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700317708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:45 Heat of formation + Delta-G solvation = -83.497731 kcal Electronic energy + Delta-G solvation = -32813.800861 eV Core-core repulsion = 28812.248010 eV Total energy + Delta-G solvation = -4001.552851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.10111 -40.28540 -39.36898 -38.04438 -35.92936 -34.76370 -34.00942 -32.81455 -31.54389 -30.82339 -29.78340 -28.47883 -27.90416 -26.78692 -24.06407 -23.37087 -22.22760 -22.18963 -21.65882 -20.59181 -20.21405 -18.74907 -18.22916 -17.84345 -17.11554 -17.02629 -16.59284 -16.18688 -15.93947 -15.84336 -15.57420 -15.40399 -15.36240 -14.78738 -14.65354 -14.42380 -14.14758 -14.02846 -13.60023 -13.37097 -13.27408 -13.09706 -12.95042 -12.85569 -12.67691 -12.62520 -12.47052 -12.38538 -12.31559 -12.17982 -12.01835 -11.97861 -11.95119 -11.69582 -11.46932 -11.41443 -11.15715 -11.02304 -10.84759 -10.48098 -10.05695 -9.98419 -8.50035 -7.77642 -5.31002 1.46020 1.48400 1.53237 1.55664 1.69670 2.10485 2.35875 2.53249 3.37193 3.46353 3.51280 3.63375 3.75594 3.94443 3.95371 4.06916 4.17701 4.24122 4.40263 4.42280 4.43983 4.48055 4.51329 4.60385 4.64531 4.66254 4.73877 4.80123 4.81481 4.93363 4.96673 4.99105 5.03680 5.06657 5.09192 5.15320 5.19192 5.20557 5.26854 5.42608 5.43478 5.47504 5.55652 5.58256 5.63423 5.75142 5.82199 6.48937 6.52735 6.62945 7.22641 7.25301 7.32729 7.93276 8.47733 9.26532 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.004103 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.832691 B = 6823.122387 C = 7469.158109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.504 3.496 3 O -0.574 6.574 4 N -0.709 5.709 5 C 0.160 3.840 6 C 0.515 3.485 7 O -0.583 6.583 8 N -0.699 5.699 9 C 0.160 3.840 10 H 0.071 0.929 11 C -0.143 4.143 12 C 0.199 3.801 13 N -0.598 5.598 14 C -0.250 4.250 15 H 0.073 0.927 16 C -0.047 4.047 17 N -0.930 5.930 18 Si 0.958 3.042 19 H -0.295 1.295 20 H -0.298 1.298 21 H -0.264 1.264 22 C 0.164 3.836 23 H 0.022 0.978 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.109 4.109 29 C -0.112 4.112 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.424 0.576 34 H 0.403 0.597 35 H 0.056 0.944 36 H 0.026 0.974 37 H 0.034 0.966 38 H 0.005 0.995 39 H 0.244 0.756 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.046 0.954 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.061 0.939 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.077 0.923 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 -19.462 -8.491 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.293 3.707 3 O -0.452 6.452 4 N -0.367 5.367 5 C 0.070 3.930 6 C 0.302 3.698 7 O -0.463 6.463 8 N -0.350 5.350 9 C 0.055 3.945 10 H 0.089 0.911 11 C -0.183 4.183 12 C 0.073 3.927 13 N -0.322 5.322 14 C -0.381 4.381 15 H 0.091 0.909 16 C -0.242 4.242 17 N -0.576 5.576 18 Si 0.787 3.213 19 H -0.223 1.223 20 H -0.225 1.225 21 H -0.188 1.188 22 C 0.058 3.942 23 H 0.040 0.960 24 C -0.185 4.185 25 C -0.164 4.164 26 C -0.154 4.154 27 C -0.158 4.158 28 C -0.146 4.146 29 C -0.150 4.150 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.143 0.857 33 H 0.263 0.737 34 H 0.239 0.761 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.023 0.977 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.109 0.891 51 H 0.096 0.904 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.387 -18.173 -8.494 21.053 hybrid contribution -1.212 1.468 0.432 1.953 sum 5.175 -16.705 -8.061 19.257 Atomic orbital electron populations 1.21820 0.89293 1.04934 1.05952 1.21413 0.91773 0.83316 0.74216 1.90798 1.71593 1.33404 1.49427 1.46094 1.05302 1.09475 1.75801 1.21192 0.81584 0.98429 0.91797 1.21173 0.83431 0.79865 0.85370 1.90620 1.27907 1.43503 1.84273 1.45929 1.22284 1.56501 1.10294 1.20743 0.97947 0.91506 0.84334 0.91070 1.22369 0.99464 0.97172 0.99316 1.20223 0.87194 0.95645 0.89598 1.44261 1.46627 1.05185 1.36166 1.19420 1.09984 1.16642 0.92016 0.90942 1.25899 0.99289 1.02516 0.96524 1.70165 1.41114 1.33358 1.12946 0.85418 0.78148 0.78832 0.78919 1.22277 1.22463 1.18814 1.20620 0.92441 0.84709 0.96430 0.96003 1.21717 1.00159 1.00061 0.96563 1.22255 0.96777 1.01047 0.96308 1.22354 0.99241 0.99046 0.94781 1.22388 0.98564 0.94262 1.00575 1.22517 1.02136 0.96624 0.93368 1.22659 1.02451 0.89854 1.00007 0.88548 0.91780 0.85685 0.73657 0.76080 0.92554 0.95504 0.94744 0.97703 0.94717 0.93796 0.90279 0.93502 0.88736 0.90865 0.91816 0.93771 0.91973 0.89956 0.88785 0.89076 0.90433 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.32 71.24 0.74 -3.36 16 2 C 0.50 15.59 6.64 87.66 0.58 16.17 16 3 O -0.57 -25.10 15.04 -3.03 -0.05 -25.15 16 4 N -0.71 -15.23 4.34 -423.02 -1.83 -17.07 16 5 C 0.16 4.01 0.88 3.58 0.00 4.01 16 6 C 0.52 18.09 5.13 87.66 0.45 18.54 16 7 O -0.58 -25.41 15.24 -3.03 -0.05 -25.46 16 8 N -0.70 -23.59 3.96 -442.42 -1.75 -25.34 16 9 C 0.16 5.84 2.74 45.02 0.12 5.97 16 10 H 0.07 2.61 7.65 -2.39 -0.02 2.59 16 11 C -0.14 -6.51 5.77 30.67 0.18 -6.34 16 12 C 0.20 10.35 4.98 86.36 0.43 10.78 16 13 N -0.60 -28.87 2.98 -675.27 -2.01 -30.88 16 14 C -0.25 -13.23 8.47 84.03 0.71 -12.51 16 15 H 0.07 3.68 6.34 -2.91 -0.02 3.66 16 16 C -0.05 -2.59 5.09 84.86 0.43 -2.16 16 17 N -0.93 -55.54 11.08 21.65 0.24 -55.30 16 18 Si 0.96 45.10 29.56 68.60 2.03 47.12 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 22 C 0.16 6.04 3.19 44.96 0.14 6.18 16 23 H 0.02 0.80 6.65 -2.39 -0.02 0.79 16 24 C -0.13 -4.15 7.98 71.98 0.57 -3.58 16 25 C -0.12 -3.92 5.07 30.66 0.16 -3.77 16 26 C -0.12 -3.19 5.23 31.32 0.16 -3.02 16 27 C -0.12 -2.21 6.83 31.67 0.22 -1.99 16 28 C -0.11 -1.28 6.91 31.89 0.22 -1.06 16 29 C -0.11 -1.71 5.99 31.67 0.19 -1.52 16 30 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 32 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.42 5.05 8.27 -92.71 -0.77 4.28 16 34 H 0.40 12.52 5.93 -92.71 -0.55 11.97 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.03 1.33 8.11 -2.38 -0.02 1.32 16 37 H 0.03 2.09 6.20 -2.39 -0.01 2.08 16 38 H 0.00 0.27 7.46 -2.39 -0.02 0.25 16 39 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.04 1.59 7.66 -2.39 -0.02 1.57 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.59 7.42 -2.38 -0.02 1.57 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.06 1.82 7.41 -2.39 -0.02 1.80 16 46 H 0.04 1.62 6.71 -2.39 -0.02 1.61 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.08 1.36 7.85 -2.39 -0.02 1.34 16 52 H 0.11 1.01 7.76 -2.38 -0.02 0.99 16 Total: -1.00 -80.22 394.01 1.50 -78.72 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.39 Total: 31.01 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 5.31 Total: 22.33 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.36 Total: -128.58 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.09 Total: -50.61 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -80.22 1.50 -78.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700317708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.773 kcal (2) G-P(sol) polarization free energy of solvation -80.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds