Wall clock time and date at job start Tue Mar 31 2020 20:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.45707 * 2 1 4 4 C 1.53039 * 109.46100 * 240.02850 * 2 1 3 5 5 H 1.09006 * 109.53749 * 60.84967 * 4 2 1 6 6 N 1.46495 * 109.50488 * 300.74772 * 4 2 1 7 7 C 1.34775 * 119.99962 * 155.19647 * 6 4 2 8 8 O 1.21278 * 120.00535 * 359.97438 * 7 6 4 9 9 C 1.50709 * 119.99829 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.46911 * 185.83454 * 9 7 6 11 11 C 1.52992 * 115.55542 * 65.53623 * 10 9 7 12 12 C 1.53005 * 117.49803 * 211.21071 * 10 9 7 13 13 C 1.53007 * 117.49497 * 279.86556 * 10 9 7 14 14 C 1.53119 * 109.27739 * 180.80199 * 4 2 1 15 15 C 1.53125 * 109.15928 * 57.66252 * 14 4 2 16 16 C 1.53040 * 109.27257 * 302.33745 * 15 14 4 17 17 N 1.46844 * 109.46290 * 119.97889 * 2 1 3 18 18 C 1.46897 * 110.99910 * 305.84934 * 17 2 1 19 19 C 1.50702 * 109.47661 * 301.83912 * 18 17 2 20 20 O 1.21297 * 119.99541 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00430 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00266 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99570 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00439 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99575 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00469 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46993 * 59.99788 * 26 24 22 28 28 H 1.48492 * 109.47314 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47139 * 300.00269 * 26 24 22 30 30 H 1.08993 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46861 * 299.97411 * 1 2 3 32 32 H 1.09004 * 109.47393 * 59.96643 * 1 2 3 33 33 H 0.96998 * 120.00023 * 335.19788 * 6 4 2 34 34 H 1.08991 * 109.47177 * 65.82944 * 9 7 6 35 35 H 1.08994 * 109.47015 * 305.82807 * 9 7 6 36 36 H 1.09004 * 109.47336 * 54.57702 * 11 10 9 37 37 H 1.08999 * 109.47374 * 174.57986 * 11 10 9 38 38 H 1.09001 * 109.47224 * 294.58190 * 11 10 9 39 39 H 1.08997 * 117.49694 * 215.00437 * 12 10 9 40 40 H 1.09008 * 117.49692 * 0.02562 * 12 10 9 41 41 H 1.08997 * 117.49941 * 359.97438 * 13 10 9 42 42 H 1.09002 * 117.49902 * 145.00292 * 13 10 9 43 43 H 1.09007 * 109.52043 * 177.55615 * 14 4 2 44 44 H 1.08992 * 109.52785 * 297.68644 * 14 4 2 45 45 H 1.08998 * 109.50656 * 62.28090 * 15 14 4 46 46 H 1.09002 * 109.50266 * 182.40545 * 15 14 4 47 47 H 1.08999 * 109.46292 * 179.19551 * 16 15 14 48 48 H 1.09000 * 109.46590 * 299.16712 * 16 15 14 49 49 H 1.09003 * 109.47137 * 61.83885 * 18 17 2 50 50 H 1.09002 * 109.47235 * 181.83634 * 18 17 2 51 51 H 0.97002 * 119.99828 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99582 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 1 1.6894 -0.1986 -2.1404 6 7 1.5371 -2.0968 -1.2604 7 6 1.4124 -2.7599 -2.4271 8 8 1.7158 -2.2174 -3.4685 9 6 0.8947 -4.1752 -2.4378 10 6 0.9878 -4.7415 -3.8561 11 6 2.4050 -4.9162 -4.4053 12 6 -0.0645 -5.7695 -4.2768 13 6 -0.1105 -4.3496 -4.8467 14 6 3.5708 -0.7360 -1.2357 15 6 4.0547 -1.4189 0.0466 16 6 3.4865 -0.6778 1.2590 17 7 2.0192 -0.6918 1.1993 18 6 1.4373 -0.1107 2.4165 19 6 1.7793 1.3554 2.4864 20 8 2.4429 1.8658 1.6087 21 7 1.3477 2.0994 3.5240 22 6 1.6592 3.4329 3.5878 23 1 2.2502 3.8873 2.8063 24 6 1.2148 4.1998 4.6578 25 7 0.4962 3.6467 5.6089 26 14 1.6387 6.0170 4.7444 27 1 1.0882 6.7110 3.5525 28 1 1.0499 6.6046 5.9745 29 1 3.1143 6.1802 4.7746 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3634 0.5144 -0.8897 33 1 1.2940 -2.5307 -0.4276 34 1 -0.1449 -4.1843 -2.1104 35 1 1.4936 -4.7863 -1.7626 36 1 2.9904 -5.5226 -3.7141 37 1 2.3604 -5.4116 -5.3751 38 1 2.8741 -3.9387 -4.5178 39 1 0.2530 -6.5702 -4.9447 40 1 -0.8234 -6.0420 -3.5432 41 1 -0.8994 -3.6886 -4.4879 42 1 0.1768 -4.2162 -5.8897 43 1 3.9378 -1.2863 -2.1021 44 1 3.9456 0.2870 -1.2684 45 1 3.7124 -2.4537 0.0592 46 1 5.1439 -1.3948 0.0830 47 1 3.8174 -1.1700 2.1734 48 1 3.8403 0.3532 1.2531 49 1 0.3541 -0.2304 2.3943 50 1 1.8413 -0.6201 3.2914 51 1 0.8173 1.6911 4.2261 52 1 0.1856 4.1822 6.3557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725640921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:44 Heat of formation + Delta-G solvation = -51.762550 kcal Electronic energy + Delta-G solvation = -30747.260196 eV Core-core repulsion = 26747.083485 eV Total energy + Delta-G solvation = -4000.176711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.45349 -39.40306 -37.96118 -37.05091 -34.48099 -33.72374 -32.88823 -31.46055 -31.22157 -29.53196 -28.18757 -27.38093 -26.39056 -24.59779 -22.77636 -22.57038 -21.47921 -20.99035 -19.45282 -19.13901 -18.84963 -17.83240 -17.08079 -16.17560 -15.81637 -15.69419 -15.27044 -15.23339 -14.76525 -14.60872 -14.37489 -14.09185 -13.93537 -13.83079 -13.65108 -13.21481 -12.92728 -12.82076 -12.45769 -12.34640 -12.16565 -11.94285 -11.79559 -11.71396 -11.63889 -11.61686 -11.39719 -11.29773 -11.15183 -10.90509 -10.51619 -10.49074 -10.47065 -10.33600 -10.30145 -10.03174 -9.97369 -9.54273 -9.42174 -9.27552 -8.79369 -8.05084 -7.45741 -6.50243 -3.91693 2.77836 3.12868 3.20314 3.22091 3.24324 3.73523 3.77906 4.10466 4.25000 4.45331 4.59181 4.72209 4.80611 4.86174 5.02374 5.05004 5.14833 5.16061 5.24336 5.31302 5.36644 5.38365 5.44937 5.58451 5.67732 5.74288 5.75401 5.77979 5.79612 5.83518 5.91515 5.95117 5.97820 5.99990 6.01283 6.09083 6.16239 6.18184 6.19476 6.26535 6.37627 6.39739 6.58398 6.62247 6.83067 7.31917 7.43334 7.46393 7.74910 7.95870 8.41508 8.50513 9.08090 9.43948 9.94290 10.66070 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.002320 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.929864 B =12064.446900 C =12318.418784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 H 0.106 0.894 4 C 0.160 3.840 5 H 0.084 0.916 6 N -0.711 5.711 7 C 0.510 3.490 8 O -0.541 6.541 9 C -0.105 4.105 10 C -0.106 4.106 11 C -0.115 4.115 12 C -0.180 4.180 13 C -0.161 4.161 14 C -0.129 4.129 15 C -0.108 4.108 16 C 0.041 3.959 17 N -0.510 5.510 18 C 0.038 3.962 19 C 0.406 3.594 20 O -0.593 6.593 21 N -0.555 5.555 22 C -0.303 4.303 23 H 0.102 0.898 24 C 0.025 3.975 25 N -0.898 5.898 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.406 0.594 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.393 0.607 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 -17.794 -11.861 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.057 4.057 3 H 0.124 0.876 4 C 0.055 3.945 5 H 0.102 0.898 6 N -0.363 5.363 7 C 0.296 3.704 8 O -0.418 6.418 9 C -0.145 4.145 10 C -0.106 4.106 11 C -0.172 4.172 12 C -0.217 4.217 13 C -0.198 4.198 14 C -0.168 4.168 15 C -0.146 4.146 16 C -0.087 4.087 17 N -0.234 5.234 18 C -0.093 4.093 19 C 0.192 3.808 20 O -0.481 6.481 21 N -0.190 5.190 22 C -0.433 4.433 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.538 5.538 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.241 0.759 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.110 0.890 50 H 0.105 0.895 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.001 -17.456 -13.026 21.781 hybrid contribution -0.096 1.328 1.225 1.809 sum -0.097 -16.129 -11.800 19.985 Atomic orbital electron populations 1.21831 0.94854 1.01379 1.01896 1.22289 0.95073 0.99806 0.88574 0.87629 1.21001 0.93342 0.81931 0.98203 0.89763 1.46059 1.65973 1.15195 1.09026 1.20550 0.78024 0.88005 0.83832 1.90666 1.50037 1.69178 1.31946 1.21205 1.02868 0.93746 0.96704 1.21011 0.92673 1.02737 0.94215 1.21322 0.93590 1.02567 0.99700 1.23148 1.01709 0.93012 1.03848 1.22918 1.00908 0.97061 0.98947 1.21920 0.95525 1.01454 0.97885 1.21489 0.99329 0.99491 0.94305 1.22238 0.87606 1.01406 0.97423 1.62407 1.07612 1.52106 1.01242 1.22094 1.01159 0.92342 0.93751 1.21061 0.85893 0.89180 0.84641 1.90383 1.44160 1.73706 1.39835 1.42049 1.46483 1.09540 1.20928 1.19652 1.31621 0.84294 1.07696 0.88027 1.25285 0.96486 1.00640 0.95359 1.69600 1.35719 1.37410 1.11116 0.85928 0.78877 0.81885 0.77622 1.19867 1.20898 1.19879 0.92696 0.92221 0.92713 0.75899 0.89032 0.88850 0.92764 0.92887 0.90821 0.88862 0.88931 0.89086 0.88925 0.91949 0.91101 0.92002 0.92139 0.91769 0.91304 0.89003 0.89496 0.77407 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.60 37.15 0.32 -1.68 16 2 C 0.05 0.78 1.66 -67.73 -0.11 0.66 16 3 H 0.11 2.05 5.36 -51.93 -0.28 1.77 16 4 C 0.16 2.20 2.26 -67.85 -0.15 2.05 16 5 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 6 N -0.71 -8.17 3.71 -53.73 -0.20 -8.37 16 7 C 0.51 6.10 7.62 -10.98 -0.08 6.01 16 8 O -0.54 -8.31 14.26 5.56 0.08 -8.23 16 9 C -0.11 -0.93 5.59 -27.88 -0.16 -1.09 16 10 C -0.11 -0.99 1.59 -154.51 -0.25 -1.23 16 11 C -0.11 -1.09 9.44 37.15 0.35 -0.74 16 12 C -0.18 -1.39 9.91 -26.69 -0.26 -1.65 16 13 C -0.16 -1.52 9.85 -26.69 -0.26 -1.78 16 14 C -0.13 -1.77 5.67 -26.61 -0.15 -1.92 16 15 C -0.11 -1.38 5.93 -26.65 -0.16 -1.54 16 16 C 0.04 0.62 5.09 -3.83 -0.02 0.60 16 17 N -0.51 -7.44 4.17 -228.12 -0.95 -8.40 16 18 C 0.04 0.62 5.30 -4.98 -0.03 0.59 16 19 C 0.41 8.75 7.04 -10.99 -0.08 8.68 16 20 O -0.59 -14.36 11.20 5.54 0.06 -14.29 16 21 N -0.56 -13.31 5.29 -10.96 -0.06 -13.36 16 22 C -0.30 -8.12 9.68 -14.94 -0.14 -8.26 16 23 H 0.10 2.87 7.16 -52.48 -0.38 2.49 16 24 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 25 N -0.90 -23.74 13.05 55.50 0.72 -23.02 16 26 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 30 H 0.05 0.67 7.39 -51.93 -0.38 0.29 16 31 H 0.06 0.92 6.24 -51.93 -0.32 0.60 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.41 4.19 7.91 -40.82 -0.32 3.87 16 34 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 38 H 0.07 0.87 6.79 -51.93 -0.35 0.51 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.74 7.73 -51.93 -0.40 0.34 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 48 H 0.07 1.29 6.00 -51.93 -0.31 0.98 16 49 H 0.09 1.36 6.32 -51.93 -0.33 1.03 16 50 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 51 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 52 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 401.69 15.07 6.05 6.05 Total: -1.00 -29.34 401.69 -9.43 -38.77 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -8.83 Total: 16.03 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.28 Total: -0.76 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.48 Total: -53.15 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.14 Total: -22.53 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.34 -9.43 -38.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725640921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.993 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds