Wall clock time and date at job start Tue Mar 31 2020 20:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.45707 * 2 1 4 4 C 1.53039 * 109.46100 * 240.02850 * 2 1 3 5 5 H 1.09006 * 109.53749 * 60.84967 * 4 2 1 6 6 N 1.46495 * 109.50488 * 300.74772 * 4 2 1 7 7 C 1.34775 * 119.99962 * 155.19647 * 6 4 2 8 8 O 1.21278 * 120.00535 * 359.97438 * 7 6 4 9 9 C 1.50709 * 119.99829 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.46911 * 185.83454 * 9 7 6 11 11 C 1.52992 * 115.55542 * 65.53623 * 10 9 7 12 12 C 1.53005 * 117.49803 * 211.21071 * 10 9 7 13 13 C 1.53007 * 117.49497 * 279.86556 * 10 9 7 14 14 C 1.53119 * 109.27739 * 180.80199 * 4 2 1 15 15 C 1.53125 * 109.15928 * 57.66252 * 14 4 2 16 16 C 1.53040 * 109.27257 * 302.33745 * 15 14 4 17 17 N 1.46844 * 109.46290 * 119.97889 * 2 1 3 18 18 C 1.46897 * 110.99910 * 305.84934 * 17 2 1 19 19 C 1.50702 * 109.47661 * 301.83912 * 18 17 2 20 20 O 1.21297 * 119.99541 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00430 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00266 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99570 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00439 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99575 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00469 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46993 * 59.99788 * 26 24 22 28 28 H 1.48492 * 109.47314 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47139 * 300.00269 * 26 24 22 30 30 H 1.08993 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46861 * 299.97411 * 1 2 3 32 32 H 1.09004 * 109.47393 * 59.96643 * 1 2 3 33 33 H 0.96998 * 120.00023 * 335.19788 * 6 4 2 34 34 H 1.08991 * 109.47177 * 65.82944 * 9 7 6 35 35 H 1.08994 * 109.47015 * 305.82807 * 9 7 6 36 36 H 1.09004 * 109.47336 * 54.57702 * 11 10 9 37 37 H 1.08999 * 109.47374 * 174.57986 * 11 10 9 38 38 H 1.09001 * 109.47224 * 294.58190 * 11 10 9 39 39 H 1.08997 * 117.49694 * 215.00437 * 12 10 9 40 40 H 1.09008 * 117.49692 * 0.02562 * 12 10 9 41 41 H 1.08997 * 117.49941 * 359.97438 * 13 10 9 42 42 H 1.09002 * 117.49902 * 145.00292 * 13 10 9 43 43 H 1.09007 * 109.52043 * 177.55615 * 14 4 2 44 44 H 1.08992 * 109.52785 * 297.68644 * 14 4 2 45 45 H 1.08998 * 109.50656 * 62.28090 * 15 14 4 46 46 H 1.09002 * 109.50266 * 182.40545 * 15 14 4 47 47 H 1.08999 * 109.46292 * 179.19551 * 16 15 14 48 48 H 1.09000 * 109.46590 * 299.16712 * 16 15 14 49 49 H 1.09003 * 109.47137 * 61.83885 * 18 17 2 50 50 H 1.09002 * 109.47235 * 181.83634 * 18 17 2 51 51 H 0.97002 * 119.99828 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99582 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 1 1.6894 -0.1986 -2.1404 6 7 1.5371 -2.0968 -1.2604 7 6 1.4124 -2.7599 -2.4271 8 8 1.7158 -2.2174 -3.4685 9 6 0.8947 -4.1752 -2.4378 10 6 0.9878 -4.7415 -3.8561 11 6 2.4050 -4.9162 -4.4053 12 6 -0.0645 -5.7695 -4.2768 13 6 -0.1105 -4.3496 -4.8467 14 6 3.5708 -0.7360 -1.2357 15 6 4.0547 -1.4189 0.0466 16 6 3.4865 -0.6778 1.2590 17 7 2.0192 -0.6918 1.1993 18 6 1.4373 -0.1107 2.4165 19 6 1.7793 1.3554 2.4864 20 8 2.4429 1.8658 1.6087 21 7 1.3477 2.0994 3.5240 22 6 1.6592 3.4329 3.5878 23 1 2.2502 3.8873 2.8063 24 6 1.2148 4.1998 4.6578 25 7 0.4962 3.6467 5.6089 26 14 1.6387 6.0170 4.7444 27 1 1.0882 6.7110 3.5525 28 1 1.0499 6.6046 5.9745 29 1 3.1143 6.1802 4.7746 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3634 0.5144 -0.8897 33 1 1.2940 -2.5307 -0.4276 34 1 -0.1449 -4.1843 -2.1104 35 1 1.4936 -4.7863 -1.7626 36 1 2.9904 -5.5226 -3.7141 37 1 2.3604 -5.4116 -5.3751 38 1 2.8741 -3.9387 -4.5178 39 1 0.2530 -6.5702 -4.9447 40 1 -0.8234 -6.0420 -3.5432 41 1 -0.8994 -3.6886 -4.4879 42 1 0.1768 -4.2162 -5.8897 43 1 3.9378 -1.2863 -2.1021 44 1 3.9456 0.2870 -1.2684 45 1 3.7124 -2.4537 0.0592 46 1 5.1439 -1.3948 0.0830 47 1 3.8174 -1.1700 2.1734 48 1 3.8403 0.3532 1.2531 49 1 0.3541 -0.2304 2.3943 50 1 1.8413 -0.6201 3.2914 51 1 0.8173 1.6911 4.2261 52 1 0.1856 4.1822 6.3557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725640921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:42 Heat of formation + Delta-G solvation = -70.676323 kcal Electronic energy + Delta-G solvation = -30748.080359 eV Core-core repulsion = 26747.083485 eV Total energy + Delta-G solvation = -4000.996873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.64629 -40.60098 -39.20337 -38.13068 -36.10500 -35.19428 -34.08926 -33.29506 -32.42186 -30.34644 -29.09394 -28.68205 -27.60222 -26.35794 -24.01687 -23.23076 -22.66514 -22.09558 -21.03179 -20.28653 -19.88852 -19.60466 -18.07609 -17.68180 -17.07275 -16.70024 -16.51727 -16.34587 -16.19897 -15.96579 -15.64829 -15.41800 -15.22812 -15.10459 -14.66302 -14.45634 -14.28230 -13.81777 -13.61408 -13.52896 -13.25810 -13.14379 -13.04627 -12.95912 -12.93441 -12.77078 -12.53044 -12.45531 -12.29393 -12.23812 -12.12856 -12.04145 -11.79870 -11.51096 -11.37580 -11.20891 -11.14464 -10.92963 -10.78344 -10.32296 -9.98408 -9.85874 -8.99053 -8.46473 -5.95783 1.35964 1.39033 1.48930 1.85136 2.03224 2.27583 2.31059 2.93270 3.05070 3.19830 3.28084 3.73303 3.78105 3.87198 3.91923 4.01471 4.04384 4.14741 4.17287 4.32845 4.41268 4.43961 4.50215 4.61538 4.66624 4.68232 4.71360 4.74649 4.77390 4.82434 4.85235 4.94149 5.00291 5.03313 5.06902 5.07943 5.11114 5.15509 5.21013 5.24642 5.31453 5.32339 5.38383 5.44009 5.46034 5.69636 5.91631 6.07545 6.13678 6.59246 6.82417 7.12182 7.49323 7.56466 8.11759 8.68416 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.002320 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.929864 B =12064.446900 C =12318.418784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.057 3.943 3 H 0.061 0.939 4 C 0.171 3.829 5 H 0.064 0.936 6 N -0.700 5.700 7 C 0.508 3.492 8 O -0.579 6.579 9 C -0.098 4.098 10 C -0.120 4.120 11 C -0.112 4.112 12 C -0.155 4.155 13 C -0.181 4.181 14 C -0.126 4.126 15 C -0.097 4.097 16 C 0.041 3.959 17 N -0.487 5.487 18 C 0.047 3.953 19 C 0.409 3.591 20 O -0.621 6.621 21 N -0.570 5.570 22 C -0.331 4.331 23 H 0.076 0.924 24 C -0.011 4.011 25 N -0.917 5.917 26 Si 0.987 3.013 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.274 1.274 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.416 0.584 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.027 0.973 49 H 0.114 0.886 50 H 0.112 0.888 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 -20.610 -11.267 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 H 0.078 0.922 4 C 0.065 3.935 5 H 0.083 0.917 6 N -0.352 5.352 7 C 0.296 3.704 8 O -0.459 6.459 9 C -0.138 4.138 10 C -0.121 4.121 11 C -0.170 4.170 12 C -0.192 4.192 13 C -0.218 4.218 14 C -0.165 4.165 15 C -0.135 4.135 16 C -0.087 4.087 17 N -0.210 5.210 18 C -0.085 4.085 19 C 0.197 3.803 20 O -0.509 6.509 21 N -0.207 5.207 22 C -0.461 4.461 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.558 5.558 26 Si 0.811 3.189 27 H -0.200 1.200 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.045 0.955 49 H 0.132 0.868 50 H 0.130 0.870 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.720 -20.306 -12.420 23.814 hybrid contribution 0.169 2.171 0.916 2.362 sum -0.551 -18.135 -11.504 21.483 Atomic orbital electron populations 1.21784 0.93661 1.02815 1.01133 1.22092 0.95960 0.97644 0.89516 0.92165 1.20655 0.93295 0.83151 0.96438 0.91739 1.45905 1.65715 1.13964 1.09663 1.21181 0.77083 0.89104 0.82989 1.90665 1.51604 1.70273 1.33309 1.21242 1.04240 0.91282 0.97007 1.21118 0.92564 1.03981 0.94422 1.21277 0.93982 1.01170 1.00528 1.23207 1.00622 0.92016 1.03385 1.22929 1.01259 0.98841 0.98739 1.21865 0.95515 1.00445 0.98660 1.21426 0.99944 0.99844 0.92267 1.22247 0.87597 0.99479 0.99327 1.62506 1.07457 1.50534 1.00460 1.22214 1.02781 0.88218 0.95290 1.22181 0.83899 0.91238 0.83011 1.90412 1.44814 1.75083 1.40567 1.42117 1.47644 1.08952 1.21977 1.19558 1.32651 0.86056 1.07816 0.90620 1.25967 0.96221 1.04162 0.94802 1.69655 1.36146 1.38616 1.11389 0.85074 0.78510 0.77432 0.77856 1.19970 1.19502 1.19888 0.90003 0.93586 0.92958 0.74681 0.87030 0.86448 0.91537 0.92311 0.93659 0.87917 0.87281 0.89688 0.89765 0.91937 0.93177 0.89944 0.91046 0.90177 0.95459 0.86803 0.87046 0.77035 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 8.60 71.98 0.62 -3.09 16 2 C 0.06 1.72 1.66 44.94 0.07 1.80 16 3 H 0.06 2.46 5.36 -2.39 -0.01 2.45 16 4 C 0.17 4.66 2.26 45.05 0.10 4.76 16 5 H 0.06 2.04 7.58 -2.38 -0.02 2.03 16 6 N -0.70 -14.65 3.71 -442.28 -1.64 -16.29 16 7 C 0.51 11.27 7.62 87.66 0.67 11.93 16 8 O -0.58 -17.69 14.26 -3.02 -0.04 -17.73 16 9 C -0.10 -1.42 5.59 29.85 0.17 -1.25 16 10 C -0.12 -1.98 1.59 -52.18 -0.08 -2.06 16 11 C -0.11 -1.99 9.44 71.98 0.68 -1.31 16 12 C -0.16 -1.92 9.91 30.62 0.30 -1.62 16 13 C -0.18 -3.17 9.85 30.62 0.30 -2.87 16 14 C -0.13 -3.46 5.67 30.68 0.17 -3.29 16 15 C -0.10 -2.32 5.93 30.65 0.18 -2.14 16 16 C 0.04 1.20 5.09 86.33 0.44 1.64 16 17 N -0.49 -13.47 4.17 -875.64 -3.65 -17.12 16 18 C 0.05 1.43 5.30 85.56 0.45 1.88 16 19 C 0.41 17.89 7.04 87.66 0.62 18.51 16 20 O -0.62 -31.30 11.20 -3.08 -0.03 -31.33 16 21 N -0.57 -27.87 5.29 -306.98 -1.62 -29.49 16 22 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 23 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -48.55 13.05 21.66 0.28 -48.26 16 26 Si 0.99 42.59 29.55 68.60 2.03 44.61 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 29 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 30 H 0.08 1.77 7.39 -2.39 -0.02 1.75 16 31 H 0.05 1.37 6.24 -2.39 -0.01 1.36 16 32 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.42 7.12 7.91 -92.71 -0.73 6.38 16 34 H 0.11 1.21 8.09 -2.39 -0.02 1.19 16 35 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 38 H 0.04 1.06 6.79 -2.39 -0.02 1.04 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.08 1.68 7.73 -2.39 -0.02 1.66 16 46 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.08 2.09 8.06 -2.39 -0.02 2.07 16 48 H 0.03 1.04 6.00 -2.39 -0.01 1.03 16 49 H 0.11 3.09 6.32 -2.39 -0.02 3.08 16 50 H 0.11 2.98 8.06 -2.39 -0.02 2.96 16 51 H 0.40 18.46 7.90 -92.71 -0.73 17.73 16 52 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -66.78 401.69 0.76 -66.02 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -0.53 Total: 44.29 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.98 Total: 5.32 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -6.63 Total: -111.17 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -0.08 Total: -49.06 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -66.78 0.76 -66.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725640921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.661 kcal (2) G-P(sol) polarization free energy of solvation -66.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds