Wall clock time and date at job start Tue Mar 31 2020 20:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.36700 * 2 1 4 4 C 1.54382 * 110.32183 * 122.18144 * 2 1 3 5 5 N 1.48556 * 104.59673 * 142.75116 * 4 2 1 6 6 C 1.46897 * 110.99920 * 200.95937 * 5 4 2 7 7 C 1.52998 * 117.49842 * 248.74606 * 6 5 4 8 8 C 1.53000 * 117.49915 * 180.08145 * 6 5 4 9 9 C 1.48568 * 104.21759 * 320.51367 * 5 4 2 10 10 C 1.54259 * 110.32246 * 237.81656 * 2 1 3 11 11 H 1.09000 * 110.32431 * 122.11552 * 10 2 1 12 12 N 1.46499 * 110.32536 * 0.02562 * 10 2 1 13 13 C 1.34777 * 119.99665 * 155.27896 * 12 10 2 14 14 O 1.21343 * 120.00424 * 359.72011 * 13 12 10 15 15 C 1.49452 * 119.99622 * 179.72283 * 13 12 10 16 16 O 1.21343 * 119.99955 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99621 * 179.97438 * 15 13 12 18 18 C 1.46505 * 119.99724 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.47192 * 180.02562 * 18 17 15 20 20 C 1.53007 * 109.46946 * 300.00266 * 19 18 17 21 21 C 1.53003 * 109.46917 * 60.00063 * 19 18 17 22 22 C 1.50693 * 109.47328 * 179.97438 * 19 18 17 23 23 H 1.08001 * 120.00171 * 0.02562 * 22 19 18 24 24 C 1.37875 * 120.00443 * 179.97438 * 22 19 18 25 25 N 1.31514 * 119.99480 * 0.02562 * 24 22 19 26 26 Si 1.86796 * 120.00574 * 180.02562 * 24 22 19 27 27 H 1.48504 * 109.47042 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47152 * 119.99887 * 26 24 22 29 29 H 1.48493 * 109.47284 * 240.00258 * 26 24 22 30 30 H 1.08998 * 109.47102 * 182.18181 * 1 2 3 31 31 H 1.08997 * 109.47235 * 302.18342 * 1 2 3 32 32 H 1.09005 * 109.46764 * 62.18082 * 1 2 3 33 33 H 1.09003 * 110.40837 * 261.52769 * 4 2 1 34 34 H 1.09003 * 110.40880 * 23.84679 * 4 2 1 35 35 H 1.09007 * 115.55316 * 34.41383 * 6 5 4 36 36 H 1.08998 * 117.49907 * 359.97438 * 7 6 5 37 37 H 1.08999 * 117.50158 * 145.02586 * 7 6 5 38 38 H 1.08996 * 117.50341 * 214.97992 * 8 6 5 39 39 H 1.09005 * 117.49867 * 359.97438 * 8 6 5 40 40 H 1.08999 * 110.40906 * 280.70179 * 9 5 4 41 41 H 1.09001 * 110.40894 * 158.26371 * 9 5 4 42 42 H 0.97001 * 119.99790 * 334.99609 * 12 10 2 43 43 H 0.97000 * 120.00483 * 0.02562 * 17 15 13 44 44 H 1.08995 * 109.46852 * 300.00269 * 18 17 15 45 45 H 1.09001 * 109.47048 * 60.00288 * 18 17 15 46 46 H 1.08990 * 109.46922 * 59.99956 * 20 19 18 47 47 H 1.08994 * 109.46561 * 179.97438 * 20 19 18 48 48 H 1.08998 * 109.46368 * 299.99842 * 20 19 18 49 49 H 1.08995 * 109.47357 * 59.99793 * 21 19 18 50 50 H 1.09001 * 109.46873 * 180.02562 * 21 19 18 51 51 H 1.09003 * 109.47092 * 299.99902 * 21 19 18 52 52 H 0.97009 * 119.99998 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0662 -0.7711 1.2253 5 7 3.2693 -1.4828 0.7226 6 6 3.6067 -2.6217 1.5870 7 6 4.8898 -2.5245 2.4148 8 6 4.8278 -3.4609 1.2054 9 6 2.8806 -1.9422 -0.6357 10 6 2.0658 -0.7705 -1.2243 11 1 2.7068 -0.1264 -1.8262 12 7 0.9543 -1.2783 -2.0323 13 6 1.1339 -1.5272 -3.3446 14 8 2.2148 -1.3261 -3.8580 15 6 0.0017 -2.0511 -4.1676 16 8 -1.0794 -2.2518 -3.6543 17 7 0.1812 -2.2996 -5.4800 18 6 -0.9289 -2.8126 -6.2869 19 6 -0.4624 -3.0073 -7.7309 20 6 0.0055 -1.6667 -8.3009 21 6 0.6956 -4.0069 -7.7624 22 6 -1.6040 -3.5356 -8.5607 23 1 -2.5662 -3.7142 -8.1040 24 6 -1.4205 -3.7900 -9.9033 25 7 -0.2489 -3.5720 -10.4597 26 14 -2.8357 -4.4441 -10.9321 27 1 -4.0387 -4.6018 -10.0758 28 1 -3.1321 -3.4894 -12.0302 29 1 -2.4617 -5.7607 -11.5083 30 1 -0.3633 -1.0269 0.0391 31 1 -0.3633 0.5473 0.8697 32 1 -0.3633 0.4796 -0.9089 33 1 2.3394 -0.0778 2.0209 34 1 1.3220 -1.4833 1.5817 35 1 2.7584 -3.1412 2.0327 36 1 5.4837 -1.6157 2.3177 37 1 4.8857 -2.9804 3.4048 38 1 4.7830 -4.5323 1.4003 39 1 5.3806 -3.1682 0.3126 40 1 2.2648 -2.8393 -0.5718 41 1 3.7670 -2.1309 -1.2413 42 1 0.0902 -1.4391 -1.6219 43 1 1.0452 -2.1388 -5.8904 44 1 -1.2618 -3.7679 -5.8810 45 1 -1.7540 -2.1007 -6.2641 46 1 0.8313 -1.2851 -7.7006 47 1 0.3382 -1.8055 -9.3294 48 1 -0.8195 -0.9547 -8.2784 49 1 0.3623 -4.9619 -7.3563 50 1 1.0282 -4.1453 -8.7911 51 1 1.5215 -3.6252 -7.1621 52 1 -0.1196 -3.7513 -11.4042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422427566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:14 Heat of formation + Delta-G solvation = -36.298954 kcal Electronic energy + Delta-G solvation = -29817.238649 eV Core-core repulsion = 25817.732490 eV Total energy + Delta-G solvation = -3999.506159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82321 -39.65317 -38.24984 -36.94057 -36.47721 -34.15111 -33.23772 -31.99647 -30.90134 -28.98570 -26.32939 -26.22146 -25.73303 -25.28855 -23.78202 -22.66579 -22.38118 -20.86591 -20.39589 -19.81812 -19.04773 -18.32274 -16.92600 -16.85867 -16.03779 -15.72705 -15.64649 -15.49067 -14.98649 -14.86787 -14.56250 -14.46961 -13.97056 -13.59112 -13.47405 -13.32456 -12.94910 -12.77559 -12.72943 -12.63050 -12.28638 -12.23272 -11.82955 -11.55912 -11.44860 -11.41571 -11.34168 -11.20263 -11.06430 -10.90545 -10.75796 -10.68377 -10.45554 -10.41377 -10.21188 -9.66577 -9.56595 -9.38185 -9.23888 -8.88660 -8.80508 -8.62056 -8.38650 -6.03808 -4.14515 1.62903 2.51234 3.26042 3.33626 3.34888 3.38805 3.44899 3.48439 3.93466 4.15288 4.23367 4.38299 4.49893 4.56365 4.63627 4.78473 4.86688 4.94990 4.95620 5.04282 5.17557 5.22892 5.26587 5.32477 5.33032 5.42794 5.60333 5.65870 5.69167 5.72593 5.83968 5.84063 6.07591 6.09884 6.21946 6.41433 6.45724 6.61314 6.66350 6.81144 6.84104 6.92785 6.99198 7.08467 7.32191 7.54070 7.65529 7.70249 7.95424 7.99018 8.11621 8.30808 8.39720 8.85912 9.51424 10.97611 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002098 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.115617 B =13339.806268 C =13873.966665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 H 0.094 0.906 4 C 0.040 3.960 5 N -0.481 5.481 6 C -0.010 4.010 7 C -0.160 4.160 8 C -0.172 4.172 9 C 0.026 3.974 10 C 0.142 3.858 11 H 0.106 0.894 12 N -0.702 5.702 13 C 0.508 3.492 14 O -0.517 6.517 15 C 0.495 3.505 16 O -0.537 6.537 17 N -0.679 5.679 18 C 0.128 3.872 19 C 0.055 3.945 20 C -0.133 4.133 21 C -0.133 4.133 22 C -0.506 4.506 23 H 0.059 0.941 24 C 0.066 3.934 25 N -0.884 5.884 26 Si 0.894 3.106 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.413 0.587 43 H 0.411 0.589 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.008 0.992 47 H 0.087 0.913 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.087 0.913 51 H 0.008 0.992 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.192 5.142 24.095 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.122 4.122 3 H 0.112 0.888 4 C -0.088 4.088 5 N -0.205 5.205 6 C -0.119 4.119 7 C -0.198 4.198 8 C -0.209 4.209 9 C -0.103 4.103 10 C 0.036 3.964 11 H 0.124 0.876 12 N -0.359 5.359 13 C 0.289 3.711 14 O -0.392 6.392 15 C 0.274 3.726 16 O -0.415 6.415 17 N -0.331 5.331 18 C 0.006 3.994 19 C 0.054 3.946 20 C -0.191 4.191 21 C -0.191 4.191 22 C -0.545 4.545 23 H 0.077 0.923 24 C -0.136 4.136 25 N -0.522 5.522 26 Si 0.722 3.278 27 H -0.198 1.198 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.253 0.747 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.027 0.973 47 H 0.106 0.894 48 H 0.047 0.953 49 H 0.046 0.954 50 H 0.106 0.894 51 H 0.027 0.973 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.752 5.456 23.854 25.668 hybrid contribution -1.422 -0.980 -0.532 1.807 sum 6.330 4.477 23.322 24.577 Atomic orbital electron populations 1.21854 0.94028 1.02182 1.03072 1.22189 0.96353 1.00354 0.93326 0.88807 1.23218 0.91002 0.97427 0.97182 1.65204 1.33050 1.20848 1.01377 1.22617 0.92523 0.95535 1.01218 1.23036 0.99612 1.01830 0.95295 1.23052 1.00594 0.97173 1.00098 1.23505 0.99826 0.96739 0.90231 1.21749 0.87829 0.94968 0.91837 0.87632 1.46094 1.15643 1.65711 1.08484 1.20546 0.88895 0.78554 0.83140 1.90755 1.26408 1.50196 1.71840 1.19968 0.88055 0.80570 0.83976 1.90718 1.26201 1.52672 1.71914 1.46229 1.17275 1.61959 1.07614 1.21949 0.87114 0.97854 0.92485 1.18393 0.95016 0.93391 0.87755 1.21853 0.97256 0.96556 1.03454 1.21857 0.96450 0.97830 1.02986 1.20978 0.96380 1.43499 0.93600 0.92308 1.24892 0.95721 0.95231 0.97746 1.69821 1.21997 1.48458 1.11949 0.86498 0.82529 0.78525 0.80214 1.19769 1.21061 1.21058 0.92249 0.91552 0.91300 0.89617 0.93232 0.89238 0.88076 0.88786 0.88620 0.88154 0.92901 0.89176 0.74666 0.75160 0.92009 0.91978 0.97256 0.89429 0.95342 0.95356 0.89426 0.97269 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 7.78 37.16 0.29 -0.76 16 2 C -0.10 -0.76 3.65 -89.23 -0.33 -1.09 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.04 0.29 6.04 -2.18 -0.01 0.27 16 5 N -0.48 -4.18 5.53 -222.01 -1.23 -5.41 16 6 C -0.01 -0.08 5.09 -67.72 -0.34 -0.42 16 7 C -0.16 -1.10 10.46 -26.69 -0.28 -1.37 16 8 C -0.17 -1.28 10.09 -26.69 -0.27 -1.55 16 9 C 0.03 0.25 5.91 -2.18 -0.01 0.24 16 10 C 0.14 1.41 3.39 -66.55 -0.23 1.18 16 11 H 0.11 1.19 7.56 -51.93 -0.39 0.79 16 12 N -0.70 -8.14 4.51 -52.90 -0.24 -8.38 16 13 C 0.51 7.65 7.89 -11.58 -0.09 7.55 16 14 O -0.52 -8.76 16.13 5.50 0.09 -8.67 16 15 C 0.49 8.59 7.89 -11.58 -0.09 8.50 16 16 O -0.54 -10.12 16.48 5.50 0.09 -10.03 16 17 N -0.68 -12.53 4.95 -60.73 -0.30 -12.83 16 18 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 19 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 20 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 21 C -0.13 -3.05 8.08 37.16 0.30 -2.74 16 22 C -0.51 -13.06 8.01 -34.44 -0.28 -13.34 16 23 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 24 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 25 N -0.88 -23.51 9.35 55.43 0.52 -23.00 16 26 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.06 0.41 6.93 -51.93 -0.36 0.05 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.53 7.75 -51.93 -0.40 0.13 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.35 7.51 -51.93 -0.39 -0.04 16 35 H 0.09 0.67 7.88 -51.93 -0.41 0.27 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.55 7.91 -51.93 -0.41 0.14 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.41 4.44 5.38 -40.82 -0.22 4.22 16 43 H 0.41 7.48 5.63 -40.82 -0.23 7.25 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 47 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 51 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 52 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 406.50 15.07 6.13 6.13 Total: -1.00 -27.92 406.50 -9.97 -37.89 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.77 Total: 9.59 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.23 Total: -0.82 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -1.25 Total: -49.61 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.18 Total: -18.70 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -27.92 -9.97 -37.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422427566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.587 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds