Wall clock time and date at job start Tue Mar 31 2020 20:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49562 * 2 1 4 4 C 1.53241 * 109.49523 * 239.91352 * 2 1 3 5 5 N 1.47153 * 108.66945 * 186.32467 * 4 2 1 6 6 C 1.34784 * 120.91807 * 231.07994 * 5 4 2 7 7 O 1.21342 * 119.99564 * 174.69988 * 6 5 4 8 8 C 1.49450 * 120.00323 * 354.70034 * 6 5 4 9 9 O 1.21346 * 120.00089 * 274.72911 * 8 6 5 10 10 N 1.34776 * 119.99975 * 94.72210 * 8 6 5 11 11 C 1.46932 * 120.62684 * 4.78192 * 10 8 6 12 12 C 1.53627 * 108.54079 * 126.36715 * 11 10 8 13 13 C 1.53041 * 109.24106 * 54.85099 * 12 11 10 14 14 C 1.53007 * 109.44732 * 178.49404 * 13 12 11 15 15 C 1.50692 * 109.47455 * 295.06375 * 14 13 12 16 16 H 1.08004 * 119.99802 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00378 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99357 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00283 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47119 * 60.00209 * 19 17 15 21 21 H 1.48504 * 109.47283 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47381 * 300.00435 * 19 17 15 23 23 C 1.53032 * 109.54192 * 298.51234 * 13 12 11 24 24 C 1.46916 * 120.63204 * 185.05902 * 10 8 6 25 25 C 1.47074 * 118.19551 * 50.84525 * 5 4 2 26 26 C 1.53245 * 108.68249 * 309.14844 * 25 5 4 27 27 H 1.09000 * 109.49105 * 293.77631 * 26 25 5 28 28 C 1.53001 * 109.49046 * 173.72175 * 26 25 5 29 29 N 1.46898 * 109.48939 * 120.04840 * 2 1 3 30 30 H 1.08992 * 109.47462 * 299.95006 * 1 2 3 31 31 H 1.09000 * 109.46861 * 59.95407 * 1 2 3 32 32 H 1.09004 * 109.47159 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.62867 * 305.91894 * 4 2 1 34 34 H 1.08994 * 109.62704 * 66.30398 * 4 2 1 35 35 H 1.09000 * 109.58494 * 246.19770 * 11 10 8 36 36 H 1.08998 * 109.58740 * 6.62509 * 11 10 8 37 37 H 1.09001 * 109.63669 * 294.86325 * 12 11 10 38 38 H 1.08993 * 109.43102 * 174.72122 * 12 11 10 39 39 H 1.09010 * 109.46188 * 58.53728 * 13 12 11 40 40 H 1.08999 * 109.46359 * 55.06818 * 14 13 12 41 41 H 1.08999 * 109.46680 * 175.06038 * 14 13 12 42 42 H 0.97004 * 119.99409 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.49956 * 301.41573 * 23 13 12 44 44 H 1.09005 * 109.52863 * 181.33682 * 23 13 12 45 45 H 1.09004 * 109.58601 * 353.37648 * 24 10 8 46 46 H 1.08997 * 109.59329 * 113.79933 * 24 10 8 47 47 H 1.09000 * 109.62674 * 189.34791 * 25 5 4 48 48 H 1.08998 * 109.63238 * 68.96009 * 25 5 4 49 49 H 1.08994 * 109.46828 * 60.00323 * 28 26 25 50 50 H 1.09001 * 109.46562 * 180.02562 * 28 26 25 51 51 H 1.08994 * 109.47014 * 300.00055 * 28 26 25 52 52 H 1.00904 * 111.00375 * 307.21666 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7242 -1.2499 5 7 3.5048 -0.8478 -1.1570 6 6 4.2987 -0.4575 -2.1739 7 8 5.5050 -0.4767 -2.0436 8 6 3.6934 -0.0010 -3.4618 9 8 3.3917 -0.8128 -4.3118 10 7 3.4826 1.3123 -3.6792 11 6 3.9372 2.3146 -2.7058 12 6 4.8031 3.3503 -3.4391 13 6 4.0108 3.9292 -4.6135 14 6 4.8551 4.9886 -5.3248 15 6 5.0949 6.1485 -4.3932 16 1 4.6863 6.1317 -3.3935 17 6 5.8367 7.2309 -4.8165 18 7 6.3346 7.2511 -6.0335 19 14 6.1333 8.6690 -3.6619 20 1 6.8515 8.1928 -2.4524 21 1 6.9529 9.6971 -4.3522 22 1 4.8309 9.2606 -3.2633 23 6 3.6624 2.8099 -5.5973 24 6 2.7886 1.7685 -4.8911 25 6 4.0782 -1.4042 0.0778 26 6 3.4866 -0.6532 1.2755 27 1 3.8235 0.3833 1.2574 28 6 3.9489 -1.3178 2.5737 29 7 2.0201 -0.6934 1.1987 30 1 -0.3634 0.5130 0.8903 31 1 -0.3633 0.5146 -0.8896 32 1 -0.3634 -1.0277 -0.0005 33 1 1.5959 -1.7174 -1.3057 34 1 1.7747 -0.1528 -2.1389 35 1 3.0739 2.8071 -2.2583 36 1 4.5265 1.8281 -1.9285 37 1 5.7090 2.8723 -3.8119 38 1 5.0709 4.1517 -2.7506 39 1 3.0928 4.3854 -4.2426 40 1 5.8109 4.5544 -5.6181 41 1 4.3273 5.3382 -6.2120 42 1 6.8569 8.0124 -6.3312 43 1 4.5791 2.3369 -5.9497 44 1 3.1187 3.2263 -6.4453 45 1 2.6199 0.9215 -5.5563 46 1 1.8336 2.2174 -4.6183 47 1 5.1611 -1.2805 0.0667 48 1 3.8313 -2.4633 0.1514 49 1 5.0371 -1.2894 2.6288 50 1 3.5276 -0.7836 3.4253 51 1 3.6111 -2.3539 2.5918 52 1 1.6037 -0.3100 2.0340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567899075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:36 Heat of formation + Delta-G solvation = -98.388355 kcal Electronic energy + Delta-G solvation = -31032.000580 eV Core-core repulsion = 27029.802022 eV Total energy + Delta-G solvation = -4002.198557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29191 -40.56030 -39.22279 -38.74107 -35.82666 -35.41089 -34.64394 -34.07019 -32.23711 -30.09724 -29.30767 -28.47225 -27.66173 -26.54131 -24.82799 -24.32161 -22.90843 -22.27579 -21.49393 -20.94826 -19.86049 -19.04862 -18.45241 -18.17059 -17.77644 -16.90168 -16.58334 -16.55493 -16.27348 -16.10201 -16.04600 -15.33337 -15.21124 -14.87780 -14.78283 -14.63006 -14.39061 -14.24740 -13.97117 -13.88825 -13.46374 -13.34257 -13.13522 -13.01976 -12.91100 -12.76076 -12.72920 -12.57796 -12.52406 -12.36817 -12.27237 -12.15368 -12.06336 -11.93088 -11.83110 -11.39588 -11.15519 -10.89543 -10.78041 -10.52110 -10.17324 -9.88859 -9.42561 -8.16423 -6.26152 0.83338 0.89260 1.29830 1.41315 1.43701 1.51051 2.11012 2.42636 2.91485 3.01818 3.17475 3.65658 3.72429 3.74346 3.94791 3.96984 3.98874 4.07845 4.09794 4.13298 4.24268 4.30920 4.38671 4.43824 4.50780 4.56326 4.65646 4.69013 4.78383 4.80968 4.81206 4.84988 5.01368 5.01583 5.02992 5.05749 5.09876 5.20834 5.28613 5.32945 5.33348 5.38921 5.41394 5.54900 5.78913 5.83618 5.88401 5.95065 5.96338 6.28033 6.42390 6.51614 6.56536 6.90830 7.42742 8.95485 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.002952 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.720600 B = 9483.448610 C =10255.740724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 H 0.043 0.957 4 C 0.110 3.890 5 N -0.590 5.590 6 C 0.517 3.483 7 O -0.550 6.550 8 C 0.515 3.485 9 O -0.548 6.548 10 N -0.584 5.584 11 C 0.115 3.885 12 C -0.113 4.113 13 C -0.070 4.070 14 C 0.032 3.968 15 C -0.528 4.528 16 H 0.069 0.931 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.290 1.290 22 H -0.263 1.263 23 C -0.126 4.126 24 C 0.117 3.883 25 C 0.113 3.887 26 C 0.077 3.923 27 H 0.037 0.963 28 C -0.138 4.138 29 N -0.677 5.677 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.076 0.924 40 H -0.021 1.021 41 H -0.009 1.009 42 H 0.261 0.739 43 H 0.039 0.961 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 -16.635 18.451 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 H 0.061 0.939 4 C -0.012 4.012 5 N -0.323 5.323 6 C 0.300 3.700 7 O -0.427 6.427 8 C 0.298 3.702 9 O -0.426 6.426 10 N -0.317 5.317 11 C -0.007 4.007 12 C -0.151 4.151 13 C -0.089 4.089 14 C -0.005 4.005 15 C -0.566 4.566 16 H 0.087 0.913 17 C -0.201 4.201 18 N -0.579 5.579 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.188 1.188 23 C -0.164 4.164 24 C -0.004 4.004 25 C -0.008 4.008 26 C -0.034 4.034 27 H 0.054 0.946 28 C -0.196 4.196 29 N -0.312 5.312 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.095 0.905 40 H -0.003 1.003 41 H 0.010 0.990 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.089 0.911 52 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.093 -17.585 17.661 28.632 hybrid contribution 1.211 1.845 -0.092 2.209 sum -12.882 -15.740 17.570 26.877 Atomic orbital electron populations 1.21742 0.91239 1.03432 1.03288 1.21791 0.97175 0.94944 0.89568 0.93931 1.22197 0.77125 1.02760 0.99096 1.48284 1.08182 1.60669 1.15154 1.20303 0.87011 0.78297 0.84436 1.90794 1.14972 1.55753 1.81180 1.20282 0.78402 0.83515 0.88015 1.90762 1.52174 1.53772 1.45883 1.48318 1.55544 1.04552 1.23291 1.22039 0.99500 0.89112 0.90059 1.21843 0.97437 0.97551 0.98265 1.21042 0.98612 0.94405 0.94817 1.19012 0.93417 0.93200 0.94859 1.21652 1.31980 1.02851 1.00088 0.91285 1.25979 0.95811 1.01703 0.96639 1.70112 1.36647 1.31893 1.19241 0.85576 0.78572 0.78542 0.78829 1.19275 1.21582 1.18770 1.21956 0.99505 0.95970 0.98936 1.21867 0.95428 0.97911 0.85220 1.22056 0.99029 0.98603 0.81151 1.21768 0.88464 0.97864 0.95284 0.94551 1.21725 1.01628 1.01729 0.94522 1.60392 1.05455 1.59915 1.05457 0.90862 0.91126 0.91200 0.89238 0.89960 0.87505 0.90772 0.94598 0.90292 0.90522 1.00288 0.99017 0.93076 0.94173 0.89786 0.89198 0.87480 0.89766 0.89279 0.91502 0.90858 0.91053 0.82031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.43 71.98 0.68 -0.41 16 2 C 0.08 0.90 3.18 45.00 0.14 1.04 16 3 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 4 C 0.11 1.82 5.75 86.34 0.50 2.32 16 5 N -0.59 -12.95 3.02 -819.33 -2.47 -15.43 16 6 C 0.52 15.50 5.61 87.27 0.49 15.99 16 7 O -0.55 -20.16 16.35 -3.22 -0.05 -20.21 16 8 C 0.52 16.12 5.55 87.27 0.48 16.61 16 9 O -0.55 -19.79 16.51 -3.23 -0.05 -19.84 16 10 N -0.58 -16.35 2.97 -819.65 -2.43 -18.78 16 11 C 0.11 3.06 6.35 86.51 0.55 3.61 16 12 C -0.11 -3.97 5.21 30.82 0.16 -3.81 16 13 C -0.07 -2.63 2.10 -10.77 -0.02 -2.65 16 14 C 0.03 1.64 4.45 29.85 0.13 1.77 16 15 C -0.53 -28.54 8.39 25.60 0.21 -28.33 16 16 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 17 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 18 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 19 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 C -0.13 -4.08 5.36 30.67 0.16 -3.91 16 24 C 0.12 3.03 6.44 86.36 0.56 3.59 16 25 C 0.11 2.05 5.89 86.35 0.51 2.56 16 26 C 0.08 1.00 3.18 45.00 0.14 1.14 16 27 H 0.04 0.56 8.14 -2.39 -0.02 0.55 16 28 C -0.14 -1.23 9.43 71.98 0.68 -0.55 16 29 N -0.68 -7.23 6.16 -468.63 -2.88 -10.12 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.08 1.44 6.47 -2.39 -0.02 1.42 16 35 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 2.02 6.23 -2.39 -0.01 2.01 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 2.90 6.91 -2.39 -0.02 2.88 16 39 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 40 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 45 H 0.09 2.41 7.00 -2.38 -0.02 2.39 16 46 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.08 1.79 7.04 -2.39 -0.02 1.77 16 48 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.36 2.62 8.65 -89.69 -0.78 1.84 16 Total: -1.00 -73.23 405.14 0.38 -72.85 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.12 Total: 13.86 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.84 Total: 9.19 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -7.51 Total: -101.23 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.11 Total: -40.05 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -73.23 0.38 -72.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567899075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.535 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds