Wall clock time and date at job start Tue Mar 31 2020 20:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.51565 * 2 1 4 4 C 1.53236 * 109.49942 * 239.92958 * 2 1 3 5 5 N 1.47085 * 108.51733 * 293.86895 * 4 2 1 6 6 C 1.34785 * 120.87768 * 128.81401 * 5 4 2 7 7 O 1.21348 * 119.99937 * 5.05262 * 6 5 4 8 8 C 1.49447 * 119.99509 * 185.04869 * 6 5 4 9 9 O 1.21349 * 120.00272 * 85.38076 * 8 6 5 10 10 N 1.34779 * 119.99746 * 265.37784 * 8 6 5 11 11 C 1.46924 * 120.63356 * 354.96249 * 10 8 6 12 12 C 1.53186 * 108.89674 * 126.29622 * 11 10 8 13 13 C 1.53354 * 109.14628 * 54.57696 * 12 11 10 14 14 C 1.52999 * 109.40499 * 178.67842 * 13 12 11 15 15 C 1.50700 * 109.47574 * 295.12314 * 14 13 12 16 16 H 1.07992 * 120.00025 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00047 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99958 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00042 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46903 * 90.00329 * 19 17 15 21 21 H 1.48504 * 109.46910 * 209.99837 * 19 17 15 22 22 H 1.48498 * 109.47019 * 329.99936 * 19 17 15 23 23 C 1.53030 * 109.60936 * 298.71256 * 13 12 11 24 24 C 1.46924 * 120.62866 * 174.94176 * 10 8 6 25 25 C 1.47077 * 118.23835 * 309.08767 * 5 4 2 26 26 C 1.52776 * 108.76564 * 50.84856 * 25 5 4 27 27 H 1.09007 * 109.35891 * 66.35659 * 26 25 5 28 28 C 1.53005 * 109.56735 * 186.37094 * 26 25 5 29 29 N 1.46897 * 109.49279 * 120.05805 * 2 1 3 30 30 H 1.09000 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47524 * 300.07221 * 1 2 3 32 32 H 1.09002 * 109.46817 * 60.07115 * 1 2 3 33 33 H 1.08993 * 109.63269 * 174.15696 * 4 2 1 34 34 H 1.09000 * 109.62940 * 53.57548 * 4 2 1 35 35 H 1.09007 * 109.58463 * 246.15999 * 11 10 8 36 36 H 1.09004 * 109.58660 * 6.43560 * 11 10 8 37 37 H 1.08996 * 109.50103 * 174.65639 * 12 11 10 38 38 H 1.08996 * 109.49909 * 294.75612 * 12 11 10 39 39 H 1.08999 * 109.43219 * 58.76224 * 13 12 11 40 40 H 1.08999 * 109.47118 * 55.12502 * 14 13 12 41 41 H 1.09007 * 109.47339 * 175.12219 * 14 13 12 42 42 H 0.96999 * 119.99763 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.50127 * 301.42361 * 23 13 12 44 44 H 1.09006 * 109.50176 * 181.32516 * 23 13 12 45 45 H 1.09000 * 109.58859 * 353.41394 * 24 10 8 46 46 H 1.08995 * 109.59073 * 113.70412 * 24 10 8 47 47 H 1.08999 * 109.62887 * 170.62214 * 25 5 4 48 48 H 1.09001 * 109.62851 * 291.20074 * 25 5 4 49 49 H 1.09002 * 109.47060 * 180.02562 * 28 26 25 50 50 H 1.09003 * 109.47038 * 300.01615 * 28 26 25 51 51 H 1.09000 * 109.47135 * 60.01037 * 28 26 25 52 52 H 1.00899 * 111.00038 * 181.00518 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0415 -0.7238 -1.2501 5 7 1.6654 -2.1426 -1.1551 6 6 1.0289 -2.7589 -2.1708 7 8 0.8402 -2.1702 -3.2149 8 6 0.5557 -4.1675 -2.0109 9 8 -0.5239 -4.3910 -1.5039 10 7 1.3281 -5.1895 -2.4299 11 6 2.5861 -4.9332 -3.1441 12 6 3.7213 -5.6745 -2.4311 13 6 3.3549 -7.1587 -2.3101 14 6 4.4993 -7.9109 -1.6280 15 6 5.7225 -7.8692 -2.5074 16 1 5.6873 -7.3571 -3.4575 17 6 6.8868 -8.4840 -2.0984 18 7 6.9301 -9.1065 -0.9406 19 14 8.4032 -8.4318 -3.1881 20 1 9.2121 -7.2323 -2.8533 21 1 9.2155 -9.6547 -2.9648 22 1 7.9873 -8.3669 -4.6122 23 6 2.0796 -7.3065 -1.4772 24 6 0.9281 -6.5811 -2.1806 25 6 1.9969 -2.8692 0.0799 26 6 1.4925 -2.0624 1.2752 27 1 0.4030 -2.0337 1.2579 28 6 1.9654 -2.7198 2.5734 29 7 2.0202 -0.6936 1.1985 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5149 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 3.1264 -0.6355 -1.3062 34 1 1.5891 -0.2838 -2.1388 35 1 2.5033 -5.2917 -4.1702 36 1 2.7935 -3.8630 -3.1467 37 1 4.6418 -5.5692 -3.0054 38 1 3.8626 -5.2528 -1.4360 39 1 3.1894 -7.5735 -3.3044 40 1 4.7238 -7.4403 -0.6708 41 1 4.2055 -8.9476 -1.4632 42 1 7.7492 -9.5393 -0.6531 43 1 2.2364 -6.8696 -0.4910 44 1 1.8338 -8.3633 -1.3725 45 1 0.0427 -6.5986 -1.5450 46 1 0.7078 -7.0733 -3.1278 47 1 1.5151 -3.8469 0.0701 48 1 3.0775 -2.9911 0.1542 49 1 1.6043 -2.1433 3.4251 50 1 1.5736 -3.7355 2.6300 51 1 3.0548 -2.7493 2.5900 52 1 3.0287 -0.6926 1.2298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567899076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:41 Heat of formation + Delta-G solvation = -93.921085 kcal Electronic energy + Delta-G solvation = -31539.532310 eV Core-core repulsion = 27537.527469 eV Total energy + Delta-G solvation = -4002.004842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37722 -40.74485 -39.35722 -38.74840 -35.80277 -35.19726 -34.40614 -34.03696 -32.25396 -30.05912 -29.39001 -28.55644 -27.64270 -26.52693 -24.91571 -24.29978 -23.18376 -22.70850 -21.33727 -20.60025 -20.03344 -18.99074 -18.41619 -18.24586 -17.72709 -16.74177 -16.53665 -16.46648 -16.20239 -16.09286 -15.90767 -15.33945 -15.22017 -15.01816 -14.78554 -14.68100 -14.55531 -14.34436 -13.98830 -13.95350 -13.48145 -13.31063 -13.13902 -13.07312 -13.01408 -12.80530 -12.70247 -12.60512 -12.52094 -12.35376 -12.26845 -12.16276 -12.11393 -11.80328 -11.64932 -11.36764 -11.14412 -10.87207 -10.80174 -10.50068 -10.48342 -9.90239 -9.24907 -8.14788 -6.23303 0.83240 0.86879 1.34207 1.42099 1.43614 1.53235 2.06720 2.43837 2.89242 3.07028 3.19546 3.62101 3.72693 3.75531 3.91437 3.94003 3.97393 3.98983 4.07325 4.10736 4.27882 4.31386 4.38600 4.44605 4.50825 4.57348 4.59186 4.66022 4.69776 4.72637 4.82984 4.87139 4.93478 4.95070 5.04395 5.05226 5.17943 5.20261 5.23794 5.29995 5.32036 5.34539 5.44110 5.58466 5.79647 5.81783 5.91426 5.92856 5.96509 6.31546 6.41865 6.50390 6.55800 6.93566 7.45443 8.96713 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.003216 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.919757 B = 8705.662822 C = 9307.853639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 H 0.125 0.875 4 C 0.071 3.929 5 N -0.585 5.585 6 C 0.520 3.480 7 O -0.546 6.546 8 C 0.514 3.486 9 O -0.549 6.549 10 N -0.584 5.584 11 C 0.112 3.888 12 C -0.106 4.106 13 C -0.074 4.074 14 C 0.035 3.965 15 C -0.526 4.526 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.264 1.264 23 C -0.118 4.118 24 C 0.115 3.885 25 C 0.071 3.929 26 C 0.075 3.925 27 H 0.077 0.923 28 C -0.139 4.139 29 N -0.669 5.669 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.062 0.938 40 H -0.009 1.009 41 H -0.011 1.011 42 H 0.260 0.740 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.066 0.934 52 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 17.175 3.345 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 H 0.143 0.857 4 C -0.052 4.052 5 N -0.318 5.318 6 C 0.303 3.697 7 O -0.423 6.423 8 C 0.297 3.703 9 O -0.427 6.427 10 N -0.317 5.317 11 C -0.010 4.010 12 C -0.144 4.144 13 C -0.093 4.093 14 C -0.002 4.002 15 C -0.564 4.564 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.188 1.188 23 C -0.156 4.156 24 C -0.006 4.006 25 C -0.054 4.054 26 C -0.036 4.036 27 H 0.095 0.905 28 C -0.197 4.197 29 N -0.300 5.300 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.010 0.990 41 H 0.007 0.993 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.111 0.889 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.086 0.914 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.653 17.544 3.576 20.834 hybrid contribution 1.408 -1.056 -1.126 2.090 sum -9.245 16.487 2.450 19.061 Atomic orbital electron populations 1.21830 0.94778 1.01047 1.02514 1.22005 0.95897 0.99017 0.86338 0.85735 1.22791 1.01658 0.78861 1.01852 1.48145 1.55262 1.12587 1.15787 1.20197 0.77949 0.87412 0.84188 1.90770 1.56995 1.66698 1.27845 1.20320 0.85158 0.86288 0.78534 1.90762 1.21896 1.84383 1.45627 1.48285 1.22137 1.06430 1.54814 1.21953 0.82065 1.00558 0.96453 1.21802 0.97164 0.94919 1.00562 1.21114 0.94190 0.95148 0.98858 1.18984 0.92689 0.93804 0.94699 1.21661 0.96747 1.33244 1.04790 0.91797 1.25865 1.02142 0.95270 0.96344 1.70091 1.28407 1.36949 1.22037 0.85618 0.79458 0.77424 0.79586 1.19970 1.21475 1.18793 1.21908 0.94103 1.00814 0.98818 1.21827 0.98086 0.78824 1.01886 1.22722 1.02225 0.96196 0.84215 1.21791 1.00337 0.87935 0.93491 0.90470 1.21717 1.02097 1.00278 0.95595 1.60696 1.15338 1.15126 1.38846 0.94768 0.90963 0.92055 0.88703 0.89168 0.89416 0.90268 0.90426 0.92500 0.91968 0.99020 0.99271 0.93082 0.92348 0.90101 0.89078 0.89502 0.90893 0.88912 0.90729 0.92012 0.91449 0.82606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.77 71.98 0.63 -1.78 16 2 C 0.08 1.04 3.70 45.00 0.17 1.21 16 3 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.07 1.19 5.95 86.35 0.51 1.70 16 5 N -0.58 -12.86 2.48 -820.41 -2.04 -14.89 16 6 C 0.52 15.01 5.49 87.27 0.48 15.49 16 7 O -0.55 -18.33 16.55 -3.24 -0.05 -18.38 16 8 C 0.51 15.81 5.51 87.27 0.48 16.29 16 9 O -0.55 -19.42 16.53 -3.24 -0.05 -19.47 16 10 N -0.58 -16.33 2.97 -820.48 -2.44 -18.77 16 11 C 0.11 2.98 6.35 86.36 0.55 3.52 16 12 C -0.11 -3.32 5.21 30.77 0.16 -3.16 16 13 C -0.07 -2.63 2.10 -10.67 -0.02 -2.65 16 14 C 0.04 1.68 4.45 29.85 0.13 1.81 16 15 C -0.53 -27.36 8.39 25.60 0.21 -27.15 16 16 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16 17 C 0.00 0.07 5.46 84.65 0.46 0.53 16 18 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 19 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 23 C -0.12 -3.51 5.36 30.67 0.16 -3.34 16 24 C 0.11 3.04 6.42 86.37 0.55 3.60 16 25 C 0.07 1.38 5.76 86.19 0.50 1.87 16 26 C 0.08 1.24 2.78 44.84 0.12 1.37 16 27 H 0.08 1.56 6.10 -2.38 -0.01 1.54 16 28 C -0.14 -1.98 9.48 71.98 0.68 -1.30 16 29 N -0.67 -8.96 6.30 -469.43 -2.96 -11.92 16 30 H 0.03 0.74 5.92 -2.39 -0.01 0.72 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.74 7.10 -2.39 -0.02 1.73 16 35 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.08 2.04 6.29 -2.39 -0.02 2.03 16 37 H 0.08 2.61 6.92 -2.39 -0.02 2.60 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H -0.01 -0.59 8.14 -2.38 -0.02 -0.60 16 42 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 45 H 0.09 2.43 7.04 -2.39 -0.02 2.41 16 46 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.07 1.70 6.37 -2.39 -0.02 1.69 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.35 3.77 8.78 -89.69 -0.79 2.99 16 Total: -1.00 -67.15 400.34 0.68 -66.47 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.12 Total: 18.88 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.79 Total: 8.03 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -7.15 Total: -99.75 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.11 Total: -37.85 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -67.15 0.68 -66.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567899076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.447 kcal (2) G-P(sol) polarization free energy of solvation -67.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds