Wall clock time and date at job start Tue Mar 31 2020 21:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50705 * 120.00155 * 2 1 4 4 C 1.52993 * 109.46967 * 125.00116 * 3 2 1 5 5 C 1.53004 * 109.47046 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47250 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.46945 * 54.99641 * 6 5 4 8 8 C 1.52997 * 109.46993 * 175.00179 * 6 5 4 9 9 N 1.46506 * 109.46829 * 295.00216 * 6 5 4 10 10 C 1.34773 * 119.99762 * 155.00239 * 9 6 5 11 11 O 1.21343 * 120.00013 * 359.97438 * 10 9 6 12 12 C 1.49454 * 119.99812 * 179.97438 * 10 9 6 13 13 O 1.21350 * 119.99594 * 0.02562 * 12 10 9 14 14 N 1.34771 * 119.99714 * 179.72358 * 12 10 9 15 15 C 1.46506 * 119.99666 * 180.02562 * 14 12 10 16 16 C 1.53043 * 109.45812 * 275.02478 * 15 14 12 17 17 C 1.53185 * 109.31440 * 178.60083 * 16 15 14 18 18 N 1.46928 * 108.76286 * 54.65553 * 17 16 15 19 19 C 1.36939 * 120.62846 * 126.40965 * 18 17 16 20 20 H 1.08007 * 119.99940 * 331.82352 * 19 18 17 21 21 C 1.38813 * 120.00227 * 151.82640 * 19 18 17 22 22 N 1.31617 * 119.99816 * 343.06815 * 21 19 18 23 23 Si 1.86796 * 120.00230 * 163.06409 * 21 19 18 24 24 H 1.48508 * 109.47036 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47260 * 120.00236 * 23 21 19 26 26 H 1.48503 * 109.47317 * 240.00631 * 23 21 19 27 27 C 1.46923 * 118.73968 * 306.38300 * 18 17 16 28 28 C 1.53032 * 109.46013 * 154.97494 * 15 14 12 29 29 H 1.08004 * 120.00274 * 359.97438 * 1 2 3 30 30 H 1.08010 * 120.00456 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.00274 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46660 * 5.00218 * 3 2 1 33 33 H 1.08998 * 109.47412 * 245.00719 * 3 2 1 34 34 H 1.08995 * 109.47347 * 60.00523 * 4 3 2 35 35 H 1.08998 * 109.47547 * 300.00520 * 4 3 2 36 36 H 1.08995 * 109.46846 * 59.99940 * 5 4 3 37 37 H 1.09000 * 109.47064 * 299.99948 * 5 4 3 38 38 H 1.08999 * 109.47137 * 179.97438 * 8 6 5 39 39 H 1.09001 * 109.47159 * 299.99699 * 8 6 5 40 40 H 1.09002 * 109.47559 * 59.99790 * 8 6 5 41 41 H 0.97003 * 119.99472 * 334.99312 * 9 6 5 42 42 H 0.96998 * 120.00353 * 0.02562 * 14 12 10 43 43 H 1.08995 * 109.46008 * 34.99704 * 15 14 12 44 44 H 1.09002 * 109.49671 * 298.56907 * 16 15 14 45 45 H 1.09004 * 109.49697 * 58.66345 * 16 15 14 46 46 H 1.08997 * 109.60233 * 294.87089 * 17 16 15 47 47 H 1.08999 * 109.70777 * 174.50277 * 17 16 15 48 48 H 0.97003 * 120.00148 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.58752 * 293.81754 * 27 18 17 50 50 H 1.09003 * 109.70286 * 173.46537 * 27 18 17 51 51 H 1.09003 * 109.49789 * 301.32892 * 28 15 14 52 52 H 1.09002 * 109.50329 * 61.39617 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7996 2.6583 1.1820 6 6 4.7716 2.6860 2.3632 7 1 5.4194 1.8105 2.3212 8 6 5.6236 3.9548 2.2929 9 7 4.0156 2.6743 3.6181 10 6 4.5850 2.1991 4.7434 11 8 5.7237 1.7806 4.7171 12 6 3.8139 2.1877 6.0236 13 8 2.6751 2.6059 6.0497 14 7 4.3814 1.7074 7.1477 15 6 3.6254 1.6956 8.4026 16 6 3.7588 3.0560 9.0909 17 6 2.9389 3.0518 10.3848 18 7 3.3649 1.9136 11.2105 19 6 3.7567 2.1018 12.5091 20 1 4.1897 3.0439 12.8114 21 6 3.5974 1.0816 13.4370 22 7 2.7871 0.0773 13.1781 23 14 4.5332 1.1341 15.0528 24 1 5.3713 2.3593 15.0998 25 1 3.5697 1.1504 16.1826 26 1 5.4024 -0.0651 15.1606 27 6 3.3620 0.5697 10.6167 28 6 4.1770 0.6020 9.3200 29 1 -0.5401 0.9353 0.0004 30 1 -0.5401 -0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 3.7399 0.5066 1.0920 35 1 2.4773 1.2354 2.1130 36 1 3.0944 3.4845 1.2718 37 1 4.3573 2.7563 0.2506 38 1 6.3158 3.9748 3.1347 39 1 6.1861 3.9635 1.3593 40 1 4.9757 4.8304 2.3349 41 1 3.1052 3.0087 3.6389 42 1 5.2904 1.3694 7.1260 43 1 2.5747 1.4969 8.1916 44 1 4.8067 3.2443 9.3246 45 1 3.3875 3.8373 8.4276 46 1 1.8798 2.9539 10.1463 47 1 3.1065 3.9811 10.9292 48 1 2.6760 -0.6357 13.8263 49 1 2.3375 0.2695 10.3971 50 1 3.8098 -0.1403 11.3121 51 1 4.1033 -0.3637 8.8199 52 1 5.2211 0.8133 9.5510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588124519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:28 Heat of formation + Delta-G solvation = -72.596201 kcal Electronic energy + Delta-G solvation = -29208.894603 eV Core-core repulsion = 25207.814477 eV Total energy + Delta-G solvation = -4001.080126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83728 -40.19844 -38.88554 -38.05286 -36.38948 -35.94184 -33.95707 -33.17230 -31.86644 -31.35527 -31.17593 -27.47945 -27.23755 -25.78052 -23.97994 -23.59001 -22.80427 -21.81491 -21.44877 -21.08704 -20.60313 -19.54275 -18.59653 -18.09261 -17.15644 -16.95790 -16.71026 -16.46708 -16.33125 -15.68542 -15.38903 -15.30824 -15.23767 -14.99345 -14.87380 -14.74488 -14.32541 -14.13674 -14.08465 -13.91169 -13.36356 -13.23761 -13.04483 -12.90168 -12.83724 -12.63740 -12.55296 -12.51250 -12.28394 -12.20537 -12.02121 -11.93831 -11.88958 -11.64354 -11.60183 -11.43979 -11.38549 -10.67245 -10.57484 -10.31225 -10.19234 -10.15301 -8.71641 -7.88560 -5.33975 0.34266 1.31682 1.42006 1.47460 1.49542 1.59912 2.14109 2.51493 2.62561 3.27581 3.40918 3.64414 3.65929 3.83168 3.94851 3.98135 4.06347 4.16728 4.27477 4.29154 4.43101 4.43843 4.60045 4.62518 4.64101 4.72309 4.74688 4.81536 4.82323 4.88739 4.94925 4.96070 5.01124 5.05437 5.11647 5.11865 5.21033 5.27476 5.30071 5.32835 5.42161 5.44135 5.45694 5.64272 5.69304 5.78447 5.90834 5.95588 6.36459 6.39080 6.74690 6.95088 7.13939 7.83367 8.35773 9.18710 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.001996 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.392136 B =14021.975195 C =14867.918933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.091 4.091 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.136 3.864 7 H 0.081 0.919 8 C -0.162 4.162 9 N -0.683 5.683 10 C 0.514 3.486 11 O -0.542 6.542 12 C 0.502 3.498 13 O -0.545 6.545 14 N -0.684 5.684 15 C 0.160 3.840 16 C -0.126 4.126 17 C 0.145 3.855 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.267 1.267 25 H -0.294 1.294 26 H -0.289 1.289 27 C 0.179 3.821 28 C -0.132 4.132 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.040 0.960 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.417 0.583 42 H 0.417 0.583 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.013 0.987 47 H 0.060 0.940 48 H 0.251 0.749 49 H 0.000 1.000 50 H 0.063 0.937 51 H 0.077 0.923 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 4.499 -29.455 29.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.183 4.183 3 C -0.128 4.128 4 C -0.154 4.154 5 C -0.155 4.155 6 C 0.033 3.967 7 H 0.099 0.901 8 C -0.220 4.220 9 N -0.336 5.336 10 C 0.294 3.706 11 O -0.419 6.419 12 C 0.283 3.717 13 O -0.423 6.423 14 N -0.335 5.335 15 C 0.056 3.944 16 C -0.166 4.166 17 C 0.019 3.981 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.215 1.215 27 C 0.053 3.947 28 C -0.171 4.171 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.254 0.746 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.031 0.969 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.018 0.982 50 H 0.082 0.918 51 H 0.095 0.905 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.693 4.393 -29.373 29.821 hybrid contribution 0.027 -0.415 1.355 1.417 sum 2.719 3.978 -28.018 28.429 Atomic orbital electron populations 1.24010 0.96268 1.02303 1.01549 1.23153 0.96277 0.99256 0.99604 1.20761 0.98112 0.94935 0.98958 1.21540 0.97964 0.97806 0.98136 1.21904 0.98061 0.98188 0.97374 1.21321 0.93743 0.99740 0.81899 0.90095 1.22167 0.99872 0.97033 1.02902 1.45950 1.18794 1.61013 1.07829 1.19973 0.86396 0.78936 0.85317 1.90747 1.18356 1.46981 1.85861 1.20407 0.86717 0.78984 0.85580 1.90751 1.18566 1.46785 1.86192 1.45983 1.18902 1.60816 1.07846 1.20877 0.95710 0.96186 0.81622 1.22208 1.01169 0.96323 0.96885 1.20966 0.94953 0.91141 0.91011 1.44360 1.76587 1.02962 1.09414 1.19539 1.32913 1.00806 0.85895 0.91462 1.25811 0.99125 0.98748 1.00900 1.70178 1.37760 1.13241 1.36887 0.85206 0.78049 0.77677 0.79480 1.19122 1.22078 1.21540 1.20555 0.95317 0.87330 0.91502 1.22298 1.00789 0.97697 0.96341 0.88162 0.88380 0.87483 0.91091 0.89749 0.92039 0.93146 0.89918 0.87838 0.94117 0.89228 0.91385 0.74575 0.74625 0.91001 0.91653 0.91498 0.96858 0.92171 0.94013 0.98229 0.91841 0.90460 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.62 14.32 67.79 0.97 -1.65 16 2 C -0.16 -2.06 9.52 25.66 0.24 -1.82 16 3 C -0.09 -0.87 5.66 29.85 0.17 -0.70 16 4 C -0.12 -1.25 5.08 30.59 0.16 -1.10 16 5 C -0.12 -0.92 4.75 30.60 0.15 -0.77 16 6 C 0.14 1.79 2.58 44.99 0.12 1.91 16 7 H 0.08 1.30 7.58 -2.39 -0.02 1.28 16 8 C -0.16 -1.94 9.48 71.98 0.68 -1.26 16 9 N -0.68 -12.08 4.52 -443.87 -2.01 -14.09 16 10 C 0.51 12.48 7.85 87.27 0.69 13.16 16 11 O -0.54 -15.13 16.14 -3.23 -0.05 -15.19 16 12 C 0.50 14.17 7.85 87.27 0.69 14.86 16 13 O -0.55 -17.64 16.14 -3.25 -0.05 -17.70 16 14 N -0.68 -19.35 5.07 -443.74 -2.25 -21.60 16 15 C 0.16 5.37 2.42 45.02 0.11 5.48 16 16 C -0.13 -4.39 5.65 30.67 0.17 -4.22 16 17 C 0.15 6.14 6.52 86.36 0.56 6.70 16 18 N -0.61 -30.48 2.99 -699.10 -2.09 -32.57 16 19 C -0.26 -14.28 9.58 84.03 0.81 -13.47 16 20 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 21 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 22 N -0.93 -54.90 11.19 21.65 0.24 -54.66 16 23 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 27 C 0.18 8.50 5.30 86.36 0.46 8.96 16 28 C -0.13 -4.73 5.55 30.67 0.17 -4.56 16 29 H 0.10 1.16 7.84 -2.91 -0.02 1.13 16 30 H 0.10 1.17 8.06 -2.91 -0.02 1.14 16 31 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.07 0.64 7.79 -2.39 -0.02 0.62 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.72 7.75 -2.39 -0.02 0.70 16 36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 38 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.42 6.68 8.07 -92.71 -0.75 5.93 16 42 H 0.42 10.62 8.07 -92.71 -0.75 9.87 16 43 H 0.07 2.67 7.57 -2.39 -0.02 2.65 16 44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 46 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 47 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 48 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 50 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 51 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 52 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -66.71 420.84 1.77 -64.94 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.60 Total: 25.09 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 6.55 Total: 19.14 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -6.11 Total: -122.91 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.10 Total: -32.88 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.71 1.77 -64.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588124519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.654 kcal (2) G-P(sol) polarization free energy of solvation -66.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds