Wall clock time and date at job start Tue Mar 31 2020 20:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21274 * 120.00414 * 2 1 4 4 N 1.34781 * 120.00034 * 179.97438 * 2 1 3 5 5 C 1.47021 * 125.64532 * 0.02907 * 4 2 1 6 6 C 1.54321 * 107.27322 * 180.78952 * 5 4 2 7 7 C 1.55165 * 102.94031 * 22.19355 * 6 5 4 8 8 C 1.52999 * 110.99982 * 206.38762 * 7 6 5 9 9 C 1.50699 * 111.00462 * 82.57203 * 7 6 5 10 10 O 1.21279 * 119.99836 * 359.72788 * 9 7 6 11 11 N 1.34781 * 119.99766 * 179.72616 * 9 7 6 12 12 C 1.46965 * 120.59068 * 5.33021 * 11 9 7 13 13 C 1.53812 * 108.39748 * 124.76030 * 12 11 9 14 14 H 1.08997 * 109.67658 * 169.38073 * 13 12 11 15 15 C 1.53004 * 109.73829 * 289.84537 * 13 12 11 16 16 N 1.46964 * 108.57859 * 49.63036 * 13 12 11 17 17 C 1.36938 * 120.59097 * 124.62908 * 16 13 12 18 18 H 1.08000 * 120.00228 * 209.09575 * 17 16 13 19 19 C 1.38811 * 120.00133 * 29.08997 * 17 16 13 20 20 N 1.31616 * 120.00186 * 16.99377 * 19 17 16 21 21 Si 1.86801 * 120.00201 * 196.99087 * 19 17 16 22 22 H 1.48504 * 109.47002 * 90.00213 * 21 19 17 23 23 H 1.48494 * 109.47480 * 210.00044 * 21 19 17 24 24 H 1.48501 * 109.47079 * 330.00232 * 21 19 17 25 25 C 1.46959 * 118.81573 * 304.65015 * 16 13 12 26 26 H 1.08999 * 109.74848 * 295.39491 * 25 16 13 27 27 C 1.53003 * 109.61102 * 174.97136 * 25 16 13 28 28 C 1.46964 * 120.59078 * 185.60870 * 11 9 7 29 29 C 1.47422 * 125.65318 * 179.71105 * 4 2 1 30 30 H 1.09000 * 109.47303 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47178 * 300.00439 * 1 2 3 32 32 H 1.09000 * 109.47273 * 59.99958 * 1 2 3 33 33 H 1.09001 * 109.88409 * 300.20556 * 5 4 2 34 34 H 1.09004 * 109.88713 * 61.21583 * 5 4 2 35 35 H 1.09001 * 110.72224 * 140.55184 * 6 5 4 36 36 H 1.09000 * 110.72367 * 263.65360 * 6 5 4 37 37 H 1.09001 * 109.47410 * 65.69703 * 8 7 6 38 38 H 1.09002 * 109.46789 * 185.69934 * 8 7 6 39 39 H 1.08998 * 109.47582 * 305.69366 * 8 7 6 40 40 H 1.09003 * 109.60448 * 244.53887 * 12 11 9 41 41 H 1.08997 * 109.61263 * 5.04660 * 12 11 9 42 42 H 1.09001 * 109.46582 * 172.07155 * 15 13 12 43 43 H 1.08999 * 109.47079 * 292.06463 * 15 13 12 44 44 H 1.08998 * 109.47114 * 52.06765 * 15 13 12 45 45 H 0.96998 * 120.00539 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.47057 * 300.85309 * 27 25 16 47 47 H 1.09007 * 109.46724 * 60.85618 * 27 25 16 48 48 H 1.08999 * 109.46846 * 180.85325 * 27 25 16 49 49 H 1.08993 * 109.61398 * 354.94802 * 28 11 9 50 50 H 1.09003 * 109.60792 * 115.29154 * 28 11 9 51 51 H 1.08995 * 110.37039 * 274.98254 * 29 4 2 52 52 H 1.09006 * 110.36509 * 37.30584 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5746 -2.5066 0.0005 6 6 2.7279 -3.5317 0.0215 7 6 3.9103 -2.7125 0.6034 8 6 5.2522 -3.2745 0.1299 9 6 3.8475 -2.6676 2.1084 10 8 2.9453 -3.2273 2.6946 11 7 4.7939 -2.0054 2.8029 12 6 5.8259 -1.2259 2.1048 13 6 5.7944 0.2142 2.6442 14 1 6.6659 0.7603 2.2835 15 6 4.5182 0.9146 2.1732 16 7 5.8164 0.1646 4.1128 17 6 6.7785 0.8367 4.8184 18 1 7.1010 0.4658 5.7801 19 6 7.3394 1.9947 4.2976 20 7 6.7391 2.6326 3.3152 21 14 8.9462 2.6480 4.9911 22 1 10.0848 2.0569 4.2432 23 1 8.9792 4.1264 4.8556 24 1 9.0520 2.2800 6.4259 25 6 4.7878 -0.6194 4.8107 26 1 3.8061 -0.1807 4.6321 27 6 5.0803 -0.6291 6.3124 28 6 4.8159 -2.0549 4.2715 29 6 3.6479 -1.3125 -0.0055 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.9515 -2.6315 0.8861 34 1 0.9724 -2.6410 -0.8981 35 1 2.4848 -4.3725 0.6711 36 1 2.9545 -3.8781 -0.9868 37 1 5.3424 -3.1403 -0.9481 38 1 6.0641 -2.7472 0.6309 39 1 5.3064 -4.3364 0.3696 40 1 6.8052 -1.6673 2.2897 41 1 5.6199 -1.2220 1.0345 42 1 4.4301 1.8812 2.6692 43 1 4.5622 1.0627 1.0942 44 1 3.6534 0.2990 2.4205 45 1 7.1308 3.4420 2.9515 46 1 6.0648 -1.0625 6.4880 47 1 5.0596 0.3921 6.6932 48 1 4.3247 -1.2237 6.8259 49 1 3.9429 -2.5984 4.6324 50 1 5.7236 -2.5566 4.6070 51 1 4.0297 -1.2645 -1.0252 52 1 4.1081 -0.5391 0.6096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880456848.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:55 Heat of formation + Delta-G solvation = -41.753947 kcal Electronic energy + Delta-G solvation = -33210.470889 eV Core-core repulsion = 29210.728184 eV Total energy + Delta-G solvation = -3999.742705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.21315 -40.47289 -39.20100 -38.01421 -35.91886 -34.79634 -33.90351 -33.02274 -30.90229 -30.67809 -29.80119 -27.87034 -27.59059 -26.77922 -25.73283 -24.22524 -23.04288 -22.71956 -20.77442 -20.51439 -19.78681 -18.32437 -17.92023 -17.56530 -17.36344 -16.91574 -16.72712 -16.28078 -15.96455 -15.80718 -15.54145 -15.38655 -14.94056 -14.78552 -14.61373 -14.18819 -14.06434 -13.76054 -13.65194 -13.49825 -13.41117 -13.28502 -13.14353 -13.00202 -12.94659 -12.83454 -12.79190 -12.47382 -12.43732 -12.34126 -12.17361 -12.01183 -11.98407 -11.80964 -11.73820 -11.44260 -11.26594 -10.94787 -10.65472 -10.42831 -9.73483 -9.63068 -8.53955 -7.79319 -5.27302 1.48884 1.51157 1.58501 1.58672 1.61352 2.00779 2.06464 2.54493 3.25430 3.33583 3.39883 3.48703 3.56106 3.84994 3.96726 4.09385 4.20994 4.26686 4.29997 4.32749 4.41169 4.42883 4.51949 4.53758 4.56072 4.60843 4.65968 4.69886 4.71553 4.75464 4.82062 4.82561 4.85892 4.93237 4.95670 5.01091 5.04611 5.16094 5.20289 5.28760 5.30385 5.32612 5.37781 5.49375 5.70504 5.73929 5.82036 6.44210 6.50760 6.51935 7.15129 7.16184 7.20230 7.88022 8.42280 9.24620 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.004496 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.076919 B = 6226.406246 C = 6886.714223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.508 3.492 3 O -0.591 6.591 4 N -0.619 5.619 5 C 0.098 3.902 6 C -0.099 4.099 7 C -0.093 4.093 8 C -0.145 4.145 9 C 0.524 3.476 10 O -0.579 6.579 11 N -0.596 5.596 12 C 0.091 3.909 13 C 0.175 3.825 14 H 0.077 0.923 15 C -0.095 4.095 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.076 0.924 19 C -0.045 4.045 20 N -0.924 5.924 21 Si 0.960 3.040 22 H -0.285 1.285 23 H -0.304 1.304 24 H -0.272 1.272 25 C 0.152 3.848 26 H -0.004 1.004 27 C -0.125 4.125 28 C 0.110 3.890 29 C 0.084 3.916 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.025 0.975 43 H 0.037 0.963 44 H 0.010 0.990 45 H 0.246 0.754 46 H 0.061 0.939 47 H 0.043 0.957 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.096 0.904 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 -15.661 -9.927 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.299 3.701 3 O -0.472 6.472 4 N -0.353 5.353 5 C -0.024 4.024 6 C -0.137 4.137 7 C -0.097 4.097 8 C -0.203 4.203 9 C 0.313 3.687 10 O -0.459 6.459 11 N -0.326 5.326 12 C -0.033 4.033 13 C 0.068 3.932 14 H 0.095 0.905 15 C -0.154 4.154 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.094 0.906 19 C -0.241 4.241 20 N -0.570 5.570 21 Si 0.790 3.210 22 H -0.211 1.211 23 H -0.231 1.231 24 H -0.197 1.197 25 C 0.045 3.955 26 H 0.014 0.986 27 C -0.183 4.183 28 C -0.014 4.014 29 C -0.039 4.039 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.029 0.971 45 H 0.055 0.945 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.093 0.907 51 H 0.114 0.886 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.009 -15.188 -9.648 19.695 hybrid contribution 0.760 1.346 0.667 1.683 sum -7.249 -13.842 -8.981 18.022 Atomic orbital electron populations 1.21874 0.88216 1.06078 1.05733 1.21351 0.92107 0.81703 0.74926 1.90757 1.71862 1.32407 1.52154 1.48673 1.07153 1.06800 1.72696 1.22277 0.97040 0.80099 1.02988 1.22654 0.90876 0.96989 1.03165 1.21960 1.00688 0.96954 0.90053 1.22078 0.92379 1.02143 1.03659 1.20749 0.80360 0.77275 0.90311 1.90587 1.35045 1.48259 1.72035 1.47973 1.29279 1.48289 1.07050 1.22876 0.90790 0.92412 0.97236 1.20806 0.97242 0.91613 0.83580 0.90495 1.21615 0.97015 0.98883 0.97886 1.44365 1.29946 1.56216 1.00967 1.19469 1.12320 1.02715 1.03831 0.90618 1.25739 1.02179 0.96172 0.99989 1.70204 1.38649 1.17974 1.30156 0.85378 0.80894 0.76332 0.78430 1.21134 1.23123 1.19658 1.20858 0.90598 0.90567 0.93432 0.98602 1.21656 1.01646 1.01295 0.93655 1.22056 1.02102 0.97615 0.79626 1.22959 0.82236 0.96427 1.02261 0.87978 0.89170 0.87125 0.91957 0.87646 0.89146 0.86289 0.88282 0.91464 0.90243 0.90763 0.87657 0.95587 0.94392 0.97067 0.94494 0.91974 0.93830 0.91119 0.90086 0.90740 0.88566 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.21 71.23 0.73 -2.47 16 2 C 0.51 15.66 7.96 87.65 0.70 16.36 16 3 O -0.59 -24.58 17.20 -3.01 -0.05 -24.63 16 4 N -0.62 -16.52 3.31 -811.82 -2.69 -19.21 16 5 C 0.10 1.83 5.50 86.73 0.48 2.31 16 6 C -0.10 -1.70 5.61 31.78 0.18 -1.52 16 7 C -0.09 -2.16 0.55 -51.53 -0.03 -2.19 16 8 C -0.15 -2.51 8.27 71.98 0.59 -1.92 16 9 C 0.52 16.93 6.42 87.66 0.56 17.49 16 10 O -0.58 -21.33 15.00 -3.03 -0.05 -21.38 16 11 N -0.60 -20.81 2.48 -817.16 -2.02 -22.83 16 12 C 0.09 3.18 3.86 86.56 0.33 3.52 16 13 C 0.17 8.03 2.35 45.18 0.11 8.13 16 14 H 0.08 4.02 6.03 -2.39 -0.01 4.01 16 15 C -0.10 -4.63 7.39 71.98 0.53 -4.10 16 16 N -0.59 -28.54 2.68 -649.89 -1.74 -30.28 16 17 C -0.25 -13.20 8.59 84.03 0.72 -12.47 16 18 H 0.08 3.82 6.21 -2.91 -0.02 3.80 16 19 C -0.04 -2.42 4.91 84.86 0.42 -2.00 16 20 N -0.92 -53.38 10.26 21.65 0.22 -53.16 16 21 Si 0.96 44.05 29.59 68.60 2.03 46.08 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 C 0.15 6.48 3.26 45.03 0.15 6.63 16 26 H 0.00 -0.18 7.60 -2.39 -0.02 -0.20 16 27 C -0.12 -4.63 7.94 71.98 0.57 -4.06 16 28 C 0.11 4.02 5.91 86.41 0.51 4.53 16 29 C 0.08 2.28 4.98 86.85 0.43 2.71 16 30 H 0.10 1.43 6.60 -2.39 -0.02 1.41 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.33 8.03 -2.39 -0.02 1.31 16 34 H 0.11 1.22 8.08 -2.39 -0.02 1.20 16 35 H 0.09 1.69 7.41 -2.39 -0.02 1.67 16 36 H 0.12 1.21 8.04 -2.39 -0.02 1.19 16 37 H 0.10 1.17 7.95 -2.39 -0.02 1.16 16 38 H 0.07 1.35 4.83 -2.39 -0.01 1.34 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 41 H 0.11 3.20 3.25 -2.39 -0.01 3.20 16 42 H 0.02 1.47 7.36 -2.39 -0.02 1.45 16 43 H 0.04 1.79 6.67 -2.39 -0.02 1.78 16 44 H 0.01 0.52 6.93 -2.39 -0.02 0.50 16 45 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 46 H 0.06 2.22 7.32 -2.39 -0.02 2.21 16 47 H 0.04 1.78 7.72 -2.38 -0.02 1.76 16 48 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.08 2.93 6.99 -2.39 -0.02 2.91 16 50 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 51 H 0.10 2.18 7.90 -2.39 -0.02 2.16 16 52 H 0.08 2.78 2.11 -2.38 -0.01 2.77 16 Total: -1.00 -74.24 379.60 3.61 -70.63 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.93 Total: 23.83 kcal Atomic # 6 Polarization: 23.96 SS G_CDS: 6.98 Total: 30.94 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -6.23 Total: -125.48 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.10 Total: -46.00 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -74.24 3.61 -70.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456848.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.880 kcal (2) G-P(sol) polarization free energy of solvation -74.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds