Wall clock time and date at job start Tue Mar 31 2020 20:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00436 * 2 1 4 4 N 1.34780 * 119.99729 * 179.97438 * 2 1 3 5 5 C 1.48112 * 127.03856 * 0.04316 * 4 2 1 6 6 C 1.54935 * 103.25744 * 140.67324 * 5 4 2 7 7 C 1.54615 * 102.83872 * 37.37897 * 6 5 4 8 8 C 1.52998 * 110.41352 * 219.21124 * 7 6 5 9 9 C 1.50703 * 110.32751 * 97.04356 * 7 6 5 10 10 O 1.21289 * 119.99930 * 1.69880 * 9 7 6 11 11 N 1.34771 * 120.00044 * 181.70339 * 9 7 6 12 12 C 1.46969 * 120.59545 * 185.32079 * 11 9 7 13 13 C 1.53378 * 108.63113 * 235.24859 * 12 11 9 14 14 H 1.08991 * 109.75313 * 70.40240 * 13 12 11 15 15 C 1.52999 * 109.60464 * 190.82630 * 13 12 11 16 16 N 1.46961 * 108.63137 * 310.56906 * 13 12 11 17 17 C 1.36938 * 120.59220 * 235.20359 * 16 13 12 18 18 H 1.08005 * 119.99607 * 126.10742 * 17 16 13 19 19 C 1.38811 * 120.00129 * 306.10562 * 17 16 13 20 20 N 1.31613 * 119.99924 * 338.13424 * 19 17 16 21 21 Si 1.86807 * 119.99771 * 158.14177 * 19 17 16 22 22 H 1.48502 * 109.46729 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47108 * 299.99753 * 21 19 17 24 24 H 1.48496 * 109.47314 * 59.99989 * 21 19 17 25 25 C 1.46966 * 118.81488 * 55.48520 * 16 13 12 26 26 H 1.09005 * 109.60754 * 64.25716 * 25 16 13 27 27 C 1.52993 * 109.61224 * 184.77477 * 25 16 13 28 28 C 1.46969 * 120.59520 * 5.33602 * 11 9 7 29 29 C 1.47485 * 127.03030 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47022 * 300.00419 * 1 2 3 32 32 H 1.09003 * 109.46658 * 60.00350 * 1 2 3 33 33 H 1.09003 * 110.66327 * 259.11788 * 5 4 2 34 34 H 1.09003 * 110.66219 * 22.06439 * 5 4 2 35 35 H 1.08998 * 110.74085 * 279.03580 * 6 5 4 36 36 H 1.08998 * 110.74057 * 155.71904 * 6 5 4 37 37 H 1.09000 * 109.47655 * 304.01258 * 8 7 6 38 38 H 1.09001 * 109.47272 * 64.00980 * 8 7 6 39 39 H 1.09001 * 109.47030 * 184.01016 * 8 7 6 40 40 H 1.08994 * 109.61282 * 115.50004 * 12 11 9 41 41 H 1.09002 * 109.60437 * 354.98439 * 12 11 9 42 42 H 1.08994 * 109.46821 * 187.52787 * 15 13 12 43 43 H 1.08993 * 109.47581 * 307.53280 * 15 13 12 44 44 H 1.09000 * 109.47020 * 67.53532 * 15 13 12 45 45 H 0.96997 * 119.99968 * 175.07793 * 20 19 17 46 46 H 1.08996 * 109.47210 * 63.44669 * 27 25 16 47 47 H 1.08999 * 109.47282 * 183.44520 * 27 25 16 48 48 H 1.08998 * 109.46994 * 303.44295 * 27 25 16 49 49 H 1.08999 * 109.60957 * 244.49628 * 28 11 9 50 50 H 1.08997 * 109.60773 * 5.01117 * 28 11 9 51 51 H 1.09000 * 109.91669 * 86.11879 * 29 4 2 52 52 H 1.08996 * 110.07804 * 324.92711 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.6029 -2.5310 0.0002 6 6 2.5390 -3.3134 -0.9548 7 6 3.9309 -2.7224 -0.6320 8 6 4.7508 -2.5575 -1.9132 9 6 4.6612 -3.6068 0.3455 10 8 4.1480 -4.6349 0.7337 11 7 5.8846 -3.2553 0.7884 12 6 6.6574 -4.1616 1.6494 13 6 7.0380 -3.4126 2.9326 14 1 6.1494 -3.2526 3.5430 15 6 8.0616 -4.2321 3.7209 16 7 7.6230 -2.1160 2.5634 17 6 8.8657 -1.7585 3.0142 18 1 9.6274 -1.4527 2.3122 19 6 9.1463 -1.7889 4.3733 20 7 8.1655 -1.7328 5.2492 21 14 10.9160 -1.9094 4.9591 22 1 10.9459 -1.9253 6.4437 23 1 11.5257 -3.1595 4.4388 24 1 11.6832 -0.7398 4.4605 25 6 6.8480 -1.2073 1.7070 26 1 5.9443 -0.8938 2.2297 27 6 7.6954 0.0180 1.3590 28 6 6.4697 -1.9586 0.4193 29 6 3.6446 -1.3478 0.0011 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6295 -2.9602 1.0019 34 1 0.5828 -2.5164 -0.3836 35 1 2.2723 -3.1270 -1.9951 36 1 2.5119 -4.3803 -0.7336 37 1 4.8194 -3.5164 -2.4268 38 1 4.2651 -1.8306 -2.5644 39 1 5.7519 -2.2077 -1.6614 40 1 7.5611 -4.4786 1.1290 41 1 6.0520 -5.0326 1.9001 42 1 8.2303 -3.7660 4.6916 43 1 7.6838 -5.2443 3.8646 44 1 9.0003 -4.2698 3.1680 45 1 8.3549 -1.8258 6.1959 46 1 8.5627 -0.2934 0.7770 47 1 7.0986 0.7187 0.7751 48 1 8.0287 0.5019 2.2771 49 1 7.3601 -2.1187 -0.1886 50 1 5.7404 -1.3748 -0.1423 51 1 4.0212 -1.3242 1.0237 52 1 4.1187 -0.5623 -0.5871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880456850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:06 Heat of formation + Delta-G solvation = -26.358616 kcal Electronic energy + Delta-G solvation = -32363.161589 eV Core-core repulsion = 28364.086475 eV Total energy + Delta-G solvation = -3999.075113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.01936 -39.36569 -37.73215 -36.86278 -34.54327 -33.30253 -32.73547 -31.32949 -30.10543 -29.72587 -27.81629 -26.48955 -26.15348 -25.74918 -24.13921 -23.41006 -21.61044 -20.44547 -19.67796 -19.46029 -18.44375 -17.12105 -17.09022 -16.25638 -15.71851 -15.55147 -15.31655 -15.00854 -14.74255 -14.51469 -14.28355 -13.91551 -13.65661 -13.55391 -13.28514 -13.16789 -12.91106 -12.67121 -12.53571 -12.47230 -12.29393 -12.04100 -11.90160 -11.58427 -11.50857 -11.39347 -11.33554 -11.10975 -11.05545 -10.86180 -10.75934 -10.57555 -10.46736 -10.34466 -10.06785 -9.97626 -9.93911 -9.72676 -9.34264 -8.82231 -8.40060 -8.01008 -6.45902 -5.77485 -3.62438 2.53398 2.76446 2.90324 3.30289 3.32737 3.37527 3.40116 4.17976 4.33027 4.40089 4.55749 4.64506 4.79762 4.97381 5.08581 5.10032 5.14028 5.20765 5.22764 5.30502 5.45340 5.56654 5.57591 5.60837 5.62853 5.65498 5.78791 5.80291 5.89713 5.94346 5.98877 6.03031 6.11943 6.13954 6.25525 6.30190 6.36869 6.49461 6.54029 6.73352 6.84302 6.95002 7.04885 7.20478 7.39091 7.41901 7.62289 7.79508 7.84828 8.05567 8.45023 8.55114 9.12238 9.65275 10.42844 11.10025 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.003698 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.292697 B = 7569.042871 C = 8263.267035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.528 3.472 3 O -0.546 6.546 4 N -0.621 5.621 5 C 0.097 3.903 6 C -0.116 4.116 7 C -0.094 4.094 8 C -0.145 4.145 9 C 0.522 3.478 10 O -0.551 6.551 11 N -0.591 5.591 12 C 0.095 3.905 13 C 0.183 3.817 14 H 0.031 0.969 15 C -0.142 4.142 16 N -0.575 5.575 17 C -0.268 4.268 18 H 0.054 0.946 19 C 0.041 3.959 20 N -0.869 5.869 21 Si 0.880 3.120 22 H -0.290 1.290 23 H -0.278 1.278 24 H -0.278 1.278 25 C 0.156 3.844 26 H 0.029 0.971 27 C -0.129 4.129 28 C 0.081 3.919 29 C 0.115 3.885 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.024 0.976 44 H 0.054 0.946 45 H 0.255 0.745 46 H 0.051 0.949 47 H 0.037 0.963 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.077 0.923 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.984 -2.143 -13.152 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.318 3.682 3 O -0.424 6.424 4 N -0.356 5.356 5 C -0.025 4.025 6 C -0.154 4.154 7 C -0.098 4.098 8 C -0.202 4.202 9 C 0.309 3.691 10 O -0.430 6.430 11 N -0.321 5.321 12 C -0.029 4.029 13 C 0.076 3.924 14 H 0.048 0.952 15 C -0.200 4.200 16 N -0.299 5.299 17 C -0.398 4.398 18 H 0.071 0.929 19 C -0.162 4.162 20 N -0.508 5.508 21 Si 0.708 3.292 22 H -0.215 1.215 23 H -0.204 1.204 24 H -0.204 1.204 25 C 0.049 3.951 26 H 0.046 0.954 27 C -0.187 4.187 28 C -0.043 4.043 29 C -0.007 4.007 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.090 0.910 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.095 0.905 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.975 -1.930 -12.720 17.576 hybrid contribution 0.951 -0.162 0.534 1.102 sum -11.024 -2.091 -12.186 16.565 Atomic orbital electron populations 1.21878 0.91412 1.04344 1.05237 1.20474 0.90280 0.81845 0.75637 1.90746 1.70651 1.30567 1.50394 1.48957 1.07347 1.06071 1.73223 1.22662 0.97803 0.81272 1.00772 1.22736 0.91445 1.01803 0.99406 1.21642 0.96908 0.95059 0.96180 1.22081 1.00489 1.02801 0.94855 1.20137 0.81359 0.86087 0.81505 1.90625 1.66523 1.26665 1.59178 1.47956 1.16353 1.18899 1.48890 1.22503 0.94361 0.92861 0.93183 1.20587 0.95367 0.85881 0.90556 0.95159 1.21970 0.98462 0.96174 1.03425 1.43975 1.16406 1.12125 1.57384 1.18599 0.87711 1.44512 0.88974 0.92906 1.25519 0.96464 0.97112 0.97119 1.70193 1.31528 1.47869 1.01228 0.86773 0.86140 0.78717 0.77557 1.21542 1.20397 1.20385 1.20956 0.94465 0.90345 0.89367 0.95381 1.21666 0.98897 0.96334 1.01795 1.22922 0.97953 0.83855 0.99594 1.22256 0.81284 0.95321 1.01876 0.90416 0.88650 0.88774 0.90296 0.89632 0.90195 0.87909 0.91621 0.91369 0.90673 0.91941 0.90282 0.89364 0.95683 0.92740 0.93442 0.92988 0.94384 0.91010 0.91456 0.90251 0.90503 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.23 36.00 0.37 -0.99 16 2 C 0.53 6.89 8.00 -10.99 -0.09 6.80 16 3 O -0.55 -9.54 17.44 5.56 0.10 -9.44 16 4 N -0.62 -7.71 3.29 -169.76 -0.56 -8.26 16 5 C 0.10 0.97 6.83 -2.13 -0.01 0.95 16 6 C -0.12 -1.20 6.00 -24.86 -0.15 -1.34 16 7 C -0.09 -1.17 0.62 -154.28 -0.10 -1.27 16 8 C -0.14 -1.51 7.88 37.16 0.29 -1.22 16 9 C 0.52 8.53 6.30 -10.99 -0.07 8.46 16 10 O -0.55 -10.37 14.81 5.55 0.08 -10.29 16 11 N -0.59 -10.25 2.94 -172.20 -0.51 -10.76 16 12 C 0.09 1.80 5.91 -3.59 -0.02 1.78 16 13 C 0.18 4.07 3.27 -67.48 -0.22 3.85 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 15 C -0.14 -3.12 7.84 37.16 0.29 -2.83 16 16 N -0.57 -13.30 2.74 -156.76 -0.43 -13.73 16 17 C -0.27 -6.72 6.51 -15.06 -0.10 -6.82 16 18 H 0.05 1.34 7.32 -52.48 -0.38 0.96 16 19 C 0.04 1.05 3.22 -17.43 -0.06 1.00 16 20 N -0.87 -23.86 11.84 55.49 0.66 -23.20 16 21 Si 0.88 20.23 29.61 -169.99 -5.03 15.20 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.16 3.13 3.67 -67.26 -0.25 2.88 16 26 H 0.03 0.63 7.80 -51.93 -0.41 0.23 16 27 C -0.13 -2.40 8.20 37.15 0.30 -2.10 16 28 C 0.08 1.32 3.51 -3.36 -0.01 1.31 16 29 C 0.12 1.58 4.53 -2.97 -0.01 1.57 16 30 H 0.08 0.46 5.92 -51.93 -0.31 0.15 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.58 6.39 -51.93 -0.33 0.24 16 35 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 36 H 0.10 1.17 6.82 -51.93 -0.35 0.82 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.82 5.20 -51.93 -0.27 0.55 16 40 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 41 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 42 H 0.09 2.17 5.00 -51.93 -0.26 1.91 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 1.20 7.54 -51.93 -0.39 0.81 16 45 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 46 H 0.05 0.93 7.68 -51.93 -0.40 0.53 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.07 1.53 7.55 -51.93 -0.39 1.14 16 49 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 50 H 0.08 1.12 3.06 -51.93 -0.16 0.96 16 51 H 0.08 1.26 6.70 -51.93 -0.35 0.91 16 52 H 0.09 1.20 6.92 -51.93 -0.36 0.84 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -31.40 384.88 -8.21 -39.61 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.49 Total: 3.05 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 0.17 Total: 12.02 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.84 Total: -55.95 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.18 Total: -19.72 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.40 -8.21 -39.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.248 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds